Search Results (20)

Due to its persistence, glyphosate contamination in soil poses environmental and health risks. Plant growth-promoting bacteria (PGPB) offer a potential solution for mitigating glyphosate pollution. This study assessed the glyphosate degradation capacity of three airborne PGPB isolates (Exiguobacterium indicum AS03, Kocuria sediminis AS04, and Rhodococcus rhodochrous AS33) individually and in a consortium (CS) compared to natural attenuation in microcosms as the control (CTL), where soil autochthonous microorganisms (MS) were present. AS03 exhibited the highest glyphosate degradation (86.3%), followed by AS04 and AS33 at 14 days (61.6% and 64.7%). The consortium accelerated glyphosate removal, reaching 99.7%, while the control treatment removal was 94% at 60 days. Aminomethylphosphonic acid (AMPA) is the main metabolite in glyphosate degradation, and it had a maximum peak in concentration at 28 days in the CS + MS (1072 mg kg⁻¹) and CTL (990 mg kg⁻¹) treatments. Subsequently, a decrease in AMPA concentration was observed at 60 days up to 349 mg kg⁻¹ and 390 mg kg⁻¹, respectively. These results suggested that soil autochthonous microorganisms and their interactions with a consortium have similar biotransformation of glyphosate, but the AMPA conversion to other intermedium metabolites through degradation was slow. A minimum AMPA concentration of 15–45 mg kg⁻¹ over time was detected with the consortium. The microbiome analysis revealed shifts in microbial composition, with an increase in glyphosate-degrading genera like Psychrobacter and Lyzobacter. These changes enhance soil resilience and fertility, demonstrating the potential of airborne PGPB for bioremediation and environmental sustainability. Full article

This paper presents the implementation of an innovative solution based on heterogeneous autonomous vehicles to tackle maritime pollution (in particular, oil spills). This solution is based on native microbial consortia with bioremediation capacity, and the adaptation of air and surface autonomous vehicles for in situ release of autochthonous microorganisms (bioaugmentation) and nutrients (biostimulation). By doing so, these systems can be applied as the first line of the response to pollution incidents from several origins that may occur inside ports, around industrial and extraction facilities, or in the open sea during transport activities in a fast, efficient, and low-cost way. The paper describes the work done in the development of a team of autonomous vehicles able to carry as payload, native organisms to naturally degrade oil spills (avoiding the introduction of additional chemical or biological additives), and the development of a multi-robot framework for efficient oil spill mitigation. Field tests have been performed in Portugal and Spain’s harbors, with a simulated oil spill, and the coordinate oil spill task between the autonomous surface vehicle (ASV) ROAZ and the unmanned aerial vehicle (UAV) STORK has been validated. Full article

The release of oil into the environment represents a pervasive problem stemming from oil exploration, accidents, transportation and releases from landfills, storage facilities or industrial plants. Compared to conventional and costly techniques, bioremediation is an attractive and promising alternative, as it can selectively degrade pollution without affecting the natural features of the site and the flora and fauna living there. In this study, the isolation, identification and characterization of autochthonous bacterial strains from a crude oil-contaminated soil sample was carried out under batch conditions over a period of 28 days. The initial colony forming units value for bacteria was 1.15 × 10⁹/g of soil. The results show that the activity of bacteria was highest at a pH of 7.25. Based on morphology, biochemical tests and an analysis of MALDI TOF, isolated autochthonous bacterial species were identified as Bacillus megaterium, Bacillus licheniformis, Bacillus cereus and Pseudomonas chlororaphis. Since allochthonous bacteria are not highly efficient in a new environment due to their low adaptability and competition with indigenous microorganisms, these autochthonous microorganisms play a pivotal role in enhancing the bioremediation process on an applicable, industrial scale. This advancement aligns with the principles of sustainable development and the green economy, as purified soil is suitable for rational reuse in the environment. Full article

Traditional soil stabilization methods are usually associated with high energy consumption, carbon emissions, and long-term environmental impact. Recent developments have shown the potential use of bio-based techniques as eco-friendly alternatives for soil stabilization. The present work studies the effects of the addition of the biopolymers xanthan gum (XG) or carboxymethyl cellulose (CMC) to a mine residue soil, combined or not with biostimulation and bioaugmentation techniques, in terms of compressive stress–strain behavior. Unconfined compressive strength (UCS) tests were performed on previously disturbed samples (two cycles of percolation, extraction and homogenization) to evaluate if the biostimulation and bioremediation remain active in a real adverse scenario. The results allowed for us to conclude that both biopolymers, when applied individually (with a content of 1%), are effective stabilizers (CMC allows for unconfined compressive strength increases of up to 109%), showing better results for CMC than Portland cement. The biostimulation of the autochthonous community of the mine residue soil was revealed to be a non-effective technique, even when combined with the biopolymers. However, good results were observed when the bioaugmentation was combined with xanthan gum, with unconfined compressive strength improvements of up to 27%. The study revealed that these bio-based techniques are promising soil engineering techniques, offering environmentally friendly alternatives for sustainable soil stabilization and contributing to a greener and more sustainable future. Full article

Biological methods are currently the most commonly used methods for removing hazardous substances from land. This research work focuses on the remediation of oil-contaminated land. The biodegradation of aliphatic hydrocarbons and PAHs as a result of inoculation with biopreparations B1 and B2 was investigated. Biopreparation B1 was developed on the basis of autochthonous bacteria, consisting of strains Dietzia sp. IN118, Gordonia sp. IN101, Mycolicibacterium frederiksbergense IN53, Rhodococcus erythropolis IN119, Rhodococcus globerulus IN113 and Raoultella sp. IN109, whereas biopreparation B2 was enriched with fungi, such as Aspergillus sydowii, Aspergillus versicolor, Candida sp., Cladosporium halotolerans, Penicillium chrysogenum. As a result of biodegradation tests conducted under ex situ conditions for soil inoculated with biopreparation B1, the concentrations of TPH and PAH were reduced by 31.85% and 27.41%, respectively. Soil inoculation with biopreparation B2 turned out to be more effective, as a result of which the concentration of TPH was reduced by 41.67% and PAH by 34.73%. Another issue was the phytoremediation of the pre-treated G6-3B2 soil with the use of Zea mays. The tests were carried out in three systems (system 1—soil G6-3B2 + Zea mays; system 2—soil G6-3B2 + biopreparation B2 + Zea mays; system 3—soil G6-3B2 + biopreparation B2 with γ-PGA + Zea mays) for 6 months. The highest degree of TPH and PAH reduction was obtained in system 3, amounting to 65.35% and 60.80%, respectively. The lowest phytoremediation efficiency was recorded in the non-inoculated system 1, where the concentration of TPH was reduced by 22.80% and PAH by 18.48%. Toxicological tests carried out using Phytotoxkit^TM, Ostracodtoxkit^TM and Microtox^® Solid Phase tests confirmed the effectiveness of remediation procedures and showed a correlation between the concentration of petroleum hydrocarbons in the soil and its toxicity. The results obtained during the research indicate the great potential of bioremediation practices with the use of microbial biopreparations and Zea mays in the treatment of soils contaminated with petroleum hydrocarbons. Full article

Dense nonaqueous phase liquids (DNAPLs) are known to be denser than water and immiscible with other fluids. Once released into the environment, they migrate downward through the variably saturated zone, causing severe damage. For this reason, it is essential to properly develop a rapid response strategy, including predictions of contaminant migration trajectories from numerical simulations modeling. This paper presents a series of simulations of free-product DNAPL extraction by means of a purpose-designed pumping well. The objective is to minimize the environmental impact caused by DNAPL release in the subsurface, estimating the recoverable free-product DNAPL, depending on the hydraulic properties of the aquifer medium, and estimating the leaving residual DNAPL that could act as a long-term pollution source. Coupling the numerical simulations to the bacterial community characterization (through biomolecular analyses), it was verified that (i) the DNAPL recovery (mainly PCE at the study site) through a pumping well would be almost complete and (ii) the application of other remediation techniques (such as bioremediation) would not be necessary to remove the pollution source because (iii) a natural attenuation process is provided by the autochthonous bacterial community, which is characterized by genera (such as Dechloromonas, Rhodoferax, and Desulfurivibrio) that have metabolic pathways capable of favoring the degradation of chlorinated compounds. Full article

The investigation focused on the deterioration of the walls in the hypogeum of “San Pietro Barisano” rupestrian church, located in the Matera-Sassi (Southern Italy), one of the UNESCO World Heritage sites. The study evaluated the biocide activity of a mixture of natural glycoalkaloids (GAs) extracted from the unripe fruit of Solanum nigrum and applied to clean a hypogeum wall surface in the church affected by bio-patinas. The analyzed bio-patina, collected before treatment and, at pre-established times, after treatment, showed changes in chemical composition detected by XPS, accompanied by visible discoloration and biological activity variation. The biocidal action of the glycoalkaloids mixture, directly employed on the wall surface, was effective after about four weeks for most bio-patina colonizers but not for the fungal species that can migrate and survive in the porosities of the calcarenite. Consequently, the cleaning procedure requires the integration of fungicidal actions, combined with the consolidation of the surfaces, to obtain complete bioremediation and avoid subsequent biological recolonization. SEM images and associated microanalysis of pretreated bio-patina have revealed the biocalcogenity of some autochthonous microorganisms, thus preluding to their eventual isolation and reintroduction on the wall surface to act as consolidants once the bio-cleaning phase has been completed. Full article

Bioremediation is an active process for the detoxification of polluted ambient media employing the metabolism of microbes, while natural attenuation relies on physical, chemical and biological processes occurring without human intervention. A shallow aquifer (A0) was treated using a bioremediation approach through the amendment of whey to detoxify the most abundant contaminants: 1,1,2,2- tetrachloroethane (1,1,2,2-TeCA), perchloroethene (PCE) and trichloroethene (TCE). A deeper aquifer (A1), showing lower concentration of the contaminants, was left untreated. In A0, a concomitant decrease of more chlorinated molecules 1,1,2,2-TeCA, PCE and TCE and an increase of less halogenated molecules such as trichloroethane (1,1,2-TCA), cis-dichloroethene (cis-DCE) and vinyl chloride (VC) were observed, suggesting that a reductive dechlorination took place. In contrast, the aquifer A1 did not show a significant decrease of contaminants during this period. A metagenomic approach (shot gun and 16S rRNA gene) was then used to investigate the microbial population of the two aquifers. A massive presence of the dehalogenator Dehalococcoides mccartyi (D. mccartyi) and a spectrum of different Geobacter species were detected in A0, after the treatment. The metagenome assembly of shotgun (SG) data further indicated a significant presence of methanogenic archaea, most likely from class Methanomassiliicoccales, at a level comparable to that of D. mccartyi. Instead, A1 was characterized by the species Burkholderia, Curvibacter and Flavobacterium. These results indicate that the autochthonous microbial consortia reflected the geochemistry of the two aquifers, with a dominant population thriving in an anoxic and nutrient rich environment implicated in reductive dehalogenation in A0 and a more diverse population, not able to decompose the pollutants, in A1. Full article

Polycyclic aromatic hydrocarbons (PAHs) are a major organic pollutant, not only because they do not self-degenerate but also because they accumulate in the food chain and give rise to serious repercussions in terms of biodiversity sustainability. Petroleum-degrading bacteria have long been used as a promising solution in the effort to biodegrade crude oil. In this study, new isolates from specific Greek environments displaying various levels of crude oil contamination, as well as isolates belonging to the ATHUBA collection, were thoroughly investigated for their capacity to degrade crude oil. Furthermore, the presence of nahH and alkJ genes in the above bacterial isolates, as well as their ability to form agglomerates or release surfactants, was investigated. Two consortia were formed, and their ability to degrade crude oil was tested, achieving similar degrading capacities as those observed with the individual strains. A Pseudomonas plecoglossicida isolate demonstrated the highest percentage (76.7%) ability to degrade crude oil. The biodegradation rate of this isolate was further evaluated by measuring the alkanes/hopanes ratio over a period of ten days, exhibiting a higher degradation rate in short-chain (C11–C21) alkanes, whereas a decrease in the ratio was observed when the number of carbons in petroleum increased. This is the first detailed report on bacterial communities in oil-polluted areas of Greece that contain a variety of bacteria with the ability to degrade PAHs in contaminated sites and may provide a novel alternative to various bioremediation processes or be used as inocula in autochthonous bioaugmentation procedures for crude oil biodegradation. Full article

Farmland-oilfield mixed areas are fragile ecosystems that require dynamic remediation to counteract the undesirable impact of energy development. Practicable assessment methods are pivotal to a fast and accurate evaluation of the in situ bioremediation process. Petroleum pollutants impose component-dependent effects on autochthonous microbiota before and after remediation. Here, the predicted functional response of soil microbiomes to petroleum pollutants was analyzed in a historically polluted farmland-oilfield mixed area from the perspective of developing a set of feasible biomarkers for immediate post-bioremediation evaluation. An array of microbial, genetic, systematic, and phenotypic biomarkers was proposed. Our results showed that the biomarkers could proxy the stage of the bioremediation multidimensionally. We argue that functional diversity should be considered together with microbial community dynamic to evaluate the restoration status of the microbial communities in petroleum-contaminated farmland-oilfield mixed environments. Full article

Methyl orange (MO) is categorized among the recalcitrant and refractory xenobiotics, representing a significant burden in the ecosystem. To clean-up the surrounding environment, advances in microbial degradation have been made. The main objective of this study was to investigate the extent to which an autochthonous consortium immobilized in alginate beads can promote an efficient biodegradation of MO. By employing response surface methodology (RSM), a parametric model explained the interaction of immobilized consortium (Raoultella planticola, Ochrobactrum thiophenivorans, Bacillus flexus and Staphylococcus xylosus) to assimilate 200 mg/L of MO in the presence of 40 g/L of NaCl within 120 h. Physicochemical analysis, including UV-Vis spectroscopy and FTIR, and monitoring of the degrading enzymes (azoreductase, DCIP reductase, NADH reductase, laccase, LiP, MnP, nitrate reductase and tyrosinase) were used to evaluate MO degradation. In addition, the toxicity of MO-degradation products was investigated by means of phytotoxicity and cytotoxicity. Chlorella vulgaris retained its photosynthetic performance (>78%), as shown by the contents of chlorophyll-a, chlorophyll-b and carotenoids. The viability of normal lung and kidney cell lines was recorded to be 90.63% and 99.23%, respectively, upon exposure to MO-metabolic outcomes. These results reflect the non-toxicity of treated samples, implying their utilization in ferti-irrigation applications and industrial cooling systems. Moreover, the immobilized consortium was employed in the bioremediation of MO from artificially contaminated agricultural and industrial effluents, in augmented and non-augmented systems. Bacterial consortium remediated MO by 155 and 128.5 mg/L in augmented systems of agricultural and industrial effluents, respectively, within 144 h, revealing its mutual synergistic interaction with both indigenous microbiotas despite differences in their chemical, physical and microbial contents. These promising results encourage the application of immobilized consortium in bioaugmentation studies using different resources. Full article

The main objectives of this study were to isolate bacteria from soil chronically contaminated with polycyclic aromatic hydrocarbons (PAHs), develop an autochthonous microbial consortium, and evaluate its ability to degrade PAHs in their native contaminated soil. Strains with the best bioremediation potential were selected during the multi-stage isolation process. Moreover, to choose bacteria with the highest bioremediation potential, the presence of PAH-degrading genes (pahE) was confirmed and the following tests were performed: tolerance to heavy metals, antagonistic behavior, phytotoxicity, and antimicrobial susceptibility. In vitro degradation of hydrocarbons led to the reduction of the total PAH content by 93.5% after the first day of incubation and by 99.22% after the eighth day. Bioremediation experiment conducted in situ in the contaminated area resulted in the average reduction of the total PAH concentration by 33.3% after 5 months and by over 72% after 13 months, compared to the concentration recorded before the intervention. Therefore, this study implicates that the development of an autochthonous microbial consortium isolated from long-term PAH-contaminated soil has the potential to enhance the bioremediation process. Full article

Deep-sea sediments (DSS) are one of the largest biotopes on Earth and host a surprisingly diverse microbial community. The harsh conditions of this cold environment lower the rate of natural attenuation, allowing the petroleum pollutants to persist for a long time in deep marine sediments raising problematic environmental concerns. The present work aims to contribute to the study of DSS microbial resources as biotechnological tools for bioremediation of petroleum hydrocarbon polluted environments. Four deep-sea sediment samples were collected in the Mid-Atlantic Ridge, south of the Azores (North Atlantic Ocean). Their autochthonous microbial diversity was investigated by 16S rRNA metabarcoding analysis. In addition, a total of 26 deep-sea bacteria strains with the ability to utilize crude oil as their sole carbon and energy source were isolated from the DSS samples. Eight of them were selected for a novel hydrocarbonoclastic-bacterial consortium and their potential to degrade petroleum hydrocarbons was tested in a bioremediation experiment. Bioaugmentation treatments (with inoculum pre-grown either in sodium acetate or petroleum) showed an increase in degradation of the hydrocarbons comparatively to natural attenuation. Our results provide new insights into deep-ocean oil spill bioremediation by applying DSS hydrocarbon-degrading consortium in lab-scale microcosm to simulate an oil spill in natural seawater. Full article

This work aimed to develop a bioremediation product of lyophilized native bacteria to respond to marine oil spills. Three oil-degrading bacterial strains (two strains of Rhodococcus erythropolis and one Pseudomonas sp.), isolated from the NW Portuguese coast, were selected for lyophilization after biomass growth optimization (tested with alternative carbon sources). Results indicated that the bacterial strains remained viable after the lyophilization process, without losing their biodegradation potential. The biomass/petroleum ratio was optimized, and the bioremediation efficiency of the lyophilized bacterial consortium was tested in microcosms with natural seawater and petroleum. An acceleration of the natural oil degradation process was observed, with an increased abundance of oil-degraders after 24 h, an emulsion of the oil/water layer after 7 days, and an increased removal of total petroleum hydrocarbons (47%) after 15 days. This study provides an insight into the formulation and optimization of lyophilized bacterial agents for application in autochthonous oil bioremediation. Full article