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Keywords = associative memory networks

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23 pages, 1956 KB  
Article
A Hybrid Multi-Agent Control Architecture for Interoperable and Deterministic IoT-Based Swine Precision Feeding
by Vicente López-Sacanell and Lluís Miquel Plà-Aragonés
AgriEngineering 2026, 8(6), 242; https://doi.org/10.3390/agriengineering8060242 (registering DOI) - 13 Jun 2026
Viewed by 67
Abstract
Precision Livestock Farming (PLF) requires real-time control systems that connect high-level Decision Support Systems with resource-constrained edge devices. This paper presents a hybrid Multi-Agent System (MAS) architecture for swine precision feeding designed to address the trade-off between semantic interoperability and real-time operational efficiency. [...] Read more.
Precision Livestock Farming (PLF) requires real-time control systems that connect high-level Decision Support Systems with resource-constrained edge devices. This paper presents a hybrid Multi-Agent System (MAS) architecture for swine precision feeding designed to address the trade-off between semantic interoperability and real-time operational efficiency. The proposed Controlling Module uses a dual-layer communication strategy: a lightweight character-delimited TCP/IP protocol ensures deterministic performance for embedded controllers, while an XML-serialized format that maps to the FIPA Agent Communication Language preserves semantic interoperability. A custom serialization/deserialization algorithm was developed to process this XML structure within LabVIEW while avoiding the overhead typically associated with generic DOM/SAX parsers. The architecture was validated in a 120 h laboratory test that combined a Digital Twin simulation of 50 virtual feeders with Hardware-in-the-Loop testing of key sensing components. Under these test conditions, no communication failures were observed, all simulated network interruptions were recovered from, and the system operated with a modest resource footprint, including an average CPU use of 15% and a peak memory use of 350 MB. The platform also processed 2590 consumption events without reported data loss during the validation period. These results indicate that the proposed hybrid MAS architecture is a feasible solution for integrating interoperable decision support and deterministic edge control in PLF applications. Full article
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22 pages, 1274 KB  
Review
From Leaky Gut to a Vulnerable Brain: Obesity-Associated Gut Barrier Failure in Colorectal Cancer and Cognitive Dysfunction
by Soo Young Lee, Sang Hee Cho and Juhyun Song
Nutrients 2026, 18(12), 1909; https://doi.org/10.3390/nu18121909 (registering DOI) - 12 Jun 2026
Viewed by 102
Abstract
Obesity is a major risk factor for colorectal cancer (CRC) and is increasingly recognized as a contributor to cancer-related cognitive impairment; however, the mechanistic pathways linking metabolic dysfunction, tumor progression, and brain dysfunction remain incompletely defined. Emerging evidence indicates that obesity-induced gut microbial [...] Read more.
Obesity is a major risk factor for colorectal cancer (CRC) and is increasingly recognized as a contributor to cancer-related cognitive impairment; however, the mechanistic pathways linking metabolic dysfunction, tumor progression, and brain dysfunction remain incompletely defined. Emerging evidence indicates that obesity-induced gut microbial dysbiosis and intestinal barrier disruption may serve as a biologically plausible mechanism connecting these processes via the gut–brain axis although direct clinical causality remains to be firmly established. In obesity, alterations in gut microbiota composition characterized by depletion of barrier-protective taxa and enrichment of pro-inflammatory and genotoxic pathobionts compromise epithelial tight-junction integrity and promote metabolic endotoxemia. The translocation of microbial products, including lipopolysaccharide, sustains chronic systemic inflammation, accelerates CRC progression, and remodels the tumor microenvironment. Notably, these peripheral inflammatory signals extend beyond the intestine and tumor, disrupting blood–brain barrier integrity, activating microglia and astrocytes, and impairing synaptic plasticity within hippocampal and frontal networks. Clinically, these processes manifest as cancer-related cognitive impairment (CRCI), with predominant deficits in attention, processing speed, and working memory, which are often detectable around the time of diagnosis and independent of chemotherapy exposure. This review synthesizes in vivo, in vitro, and human evidence into a proposed theoretical “two-barrier failure” model of obesity-associated CRC and cognitive dysfunction. In addition to mechanistic synthesis, we discuss barrier-centered therapeutic strategies, including targeted probiotics, postbiotics, SCFA supplementation, obesity management through dietary and weight-loss interventions, and potential pharmacological approaches to epithelial and neurovascular barrier protection. We also outline testable clinical trial designs for evaluating these interventions in obesity-associated CRC. Full article
(This article belongs to the Special Issue Gut–Microbiome–Brain Axis: Role in Cognitive Ageing)
37 pages, 12330 KB  
Review
Secure V2X Communication in the Quantum Era: A Survey of Post-Quantum Authentication and Key Agreement (AKA) Protocols for Autonomous Vehicles
by Weiqi Wang and Soo Fun Tan
Future Internet 2026, 18(6), 319; https://doi.org/10.3390/fi18060319 - 11 Jun 2026
Viewed by 166
Abstract
Vehicle-to-Everything (V2X) communication is a critical enabler of autonomous driving, supporting real-time information exchange among vehicles, roadside infrastructure, pedestrians, and cloud services. However, the security of current V2X systems largely relies on classical cryptographic mechanisms, which are expected to become vulnerable in the [...] Read more.
Vehicle-to-Everything (V2X) communication is a critical enabler of autonomous driving, supporting real-time information exchange among vehicles, roadside infrastructure, pedestrians, and cloud services. However, the security of current V2X systems largely relies on classical cryptographic mechanisms, which are expected to become vulnerable in the presence of large-scale quantum computers. Given the long operational lifespan and stringent safety requirements of autonomous vehicular networks, the transition toward quantum-resistant authentication and key management mechanisms has become increasingly important. This paper presents a comprehensive survey of post-quantum Authentication and Key Agreement (AKA) protocols for secure V2X communications. The survey systematically reviews V2X communication architectures, security and privacy requirements, existing authentication frameworks, and emerging post-quantum cryptographic approaches. Representative AKA schemes and NIST-standardized post-quantum algorithms are comparatively analyzed in terms of security strength, computational complexity, communication overhead, storage requirements, scalability, and deployment suitability for resource-constrained vehicular environments. The survey further examines practical implementation challenges, including latency constraints, bandwidth limitations, signature size expansion, memory consumption, and hardware resource requirements. The analysis reveals that achieving quantum-resistant security in V2X networks requires balancing strong cryptographic protection with the stringent performance demands of safety-critical vehicular applications. While recent post-quantum approaches offer promising security guarantees against quantum adversaries, their practical deployment remains constrained by computational and communication overhead. Finally, this survey identifies key research gaps and outlines future directions for the development of lightweight, scalable, and quantum-resilient AKA frameworks capable of supporting next-generation autonomous transportation systems. The findings provide researchers and practitioners with a structured understanding of the opportunities, limitations, and challenges associated with securing future V2X communications in the quantum era. Full article
(This article belongs to the Special Issue Future Industrial Networks: Technologies, Algorithms, and Protocols)
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46 pages, 2446 KB  
Article
Market-Based Risk Dynamics in Eco-Resource Financial Sectors and Energy Finance: Evidence from Conventional and Islamic Real Estate Assets Using TVP-VAR and LSTM-NN
by Mahdi Ghaemi Asl
Sustainability 2026, 18(12), 5954; https://doi.org/10.3390/su18125954 - 10 Jun 2026
Viewed by 159
Abstract
This study examines whether conventional and Islamic real estate indices are associated with different patterns of financial connectedness and long-memory behavior in selected eco-resource sectors. The analysis focuses on four resource-related financial markets—water, food, agriculture and livestock, and reduced-energy sector exposure—and evaluates how [...] Read more.
This study examines whether conventional and Islamic real estate indices are associated with different patterns of financial connectedness and long-memory behavior in selected eco-resource sectors. The analysis focuses on four resource-related financial markets—water, food, agriculture and livestock, and reduced-energy sector exposure—and evaluates how the inclusion of different real estate indices changes the connectedness structure of this system. Bayesian Time-Varying Parameter Vector Autoregression (TVP-VAR) is used to estimate time-varying connectedness and spillover dynamics, while Long Short-Term Memory Neural Networks (LSTM-NN) are applied as a complementary tool to assess long-memory and forecasting-related patterns in the connectedness series. Compared with using either method alone, this design captures both the evolving network structure of market-based risk transmission and the persistence of connectedness patterns over time. Using market data from 20 September 2016 to 9 January 2026, the results show that conventional real estate indices are generally associated with stronger connectedness in the eco-resource financial network, suggesting greater potential for market-based risk transmission. In contrast, Islamic real estate indices exhibit comparatively lower connectedness and more persistent long-memory behavior in the examined sample. These findings indicate that real estate asset heterogeneity matters for understanding financial connectedness among selected sustainability-related sectors. The study contributes to sustainable finance by showing how conventional and Islamic real estate assets may play different roles in the financial connectedness of resource-related markets. Full article
(This article belongs to the Special Issue Advances in Climate and Energy Economics)
30 pages, 20281 KB  
Article
NGF-Hydrogel Ameliorates Aberrant Adult Hippocampal Neurogenesis and Improves Hippocampal Remodeling After Epilepsy
by Yuanyuan Bai, Kangzhen Chen, Taojie Yao, Shengbo Shi, Hongmei Duan, Peng Hao, Wen Zhao, Yudan Gao, Xiaoguang Li and Zhaoyang Yang
Curr. Issues Mol. Biol. 2026, 48(6), 608; https://doi.org/10.3390/cimb48060608 - 10 Jun 2026
Viewed by 85
Abstract
Temporal lobe epilepsy (TLE) is a common drug-resistant epilepsy characterized by recurrent seizures, cognitive impairment, aberrant adult hippocampal neurogenesis, inhibitory circuit disruption, and persistent inflammatory remodeling. Current anti-seizure medications primarily offer symptomatic control and do not target the progressive structural and functional deterioration [...] Read more.
Temporal lobe epilepsy (TLE) is a common drug-resistant epilepsy characterized by recurrent seizures, cognitive impairment, aberrant adult hippocampal neurogenesis, inhibitory circuit disruption, and persistent inflammatory remodeling. Current anti-seizure medications primarily offer symptomatic control and do not target the progressive structural and functional deterioration of epileptic hippocampal networks. Here, we investigated whether local nerve growth factor (NGF)-hydrogel delivery during the latent phase after status epilepticus could mitigate hippocampal pathological remodeling and improve long-term outcomes in a kainic acid (KA)-induced mouse model (utilizing C57BL/6J and Nestin-CreERT2 mice). Animals were randomly assigned to three groups: the saline control group, the untreated KA epilepsy group, and the KA + NGF-hydrogel treatment group. NGF-hydrogel was administered into hippocampal Cornu Ammonis 1 (CA1) beginning 3 days post-kainic acid and repeated every 15 days. Histological, immunofluorescence, circuit-tracing, electrophysiology, electroencephalography (EEG), and behavioral assessments were used to evaluate neurogenesis, microenvironment, circuit readouts, seizure burden, and cognition. NGF-hydrogel treatment was associated with preserved dentate gyrus neural stem cell populations, improved newborn granule cell localization and maturation, attenuated neuroinflammation and gliosis, and partial recovery of inhibitory interneuron markers. These changes were accompanied by improved hippocampal circuit readouts, reduced chronic spontaneous seizure burden, and enhanced recognition and spatial memory. Our findings indicate that local NGF-hydrogel delivery following status epilepticus is associated with improved hippocampal remodeling and functional outcomes, and suggest that biomaterial-based neurotrophic support may be a promising strategy for providing targeted neuroprotection and facilitating excitatory/inhibitory (E/I) balance reconstruction in the epileptic hippocampus. Full article
(This article belongs to the Special Issue Cellular and Molecular Mechanisms of Epilepsy)
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29 pages, 26825 KB  
Article
AI-Assisted Urban Renewal Scheme Design Method Based on Urban Memory: A Case Study of Hanzheng Street, Wuhan, China
by Han Zou, Yufei Long, Ali Cheshmehzangi, Cong Sun, Junchao Duan, Jiayi Tian and Qizhi Dong
Sustainability 2026, 18(11), 5688; https://doi.org/10.3390/su18115688 - 4 Jun 2026
Viewed by 243
Abstract
With the expanding application of digital technologies in urban renewal, more effective ways of incorporating dispersed public experience and needs into the renewal process still require further exploration. To address this issue, this research innovatively proposes an AI-assisted renewal method for historic districts [...] Read more.
With the expanding application of digital technologies in urban renewal, more effective ways of incorporating dispersed public experience and needs into the renewal process still require further exploration. To address this issue, this research innovatively proposes an AI-assisted renewal method for historic districts driven by urban memory, constructing a continuous methodological chain from the identification of public evaluations to problem translation, to scheme generation and feedback validation. This research integrates the concept of interessement devices from Actor-Network Theory (ANT) with generative AI technologies for case application and validation. Taking Hanzheng Street as a case study, this research extracts the public’s urban memory of the historic district from online comments and identifies renewal demands. These demands were further associated with urban image elements to clarify their spatial carriers and support the subsequent generation of scene-based renewal schemes. On this basis, AI-generated images are further used to present renewed scenarios, and public evaluations of the renewal effects are collected. The results show that urban memory of Hanzheng Street can be summarized into five themes, which were further translated into five obligatory passage points (OPPs), one core issue, and corresponding renewal demands for scene units. The renewal schemes generated through this method achieved a relatively high level of public recognition overall, with mean evaluation scores ranging from 4.10 to 4.27, an overall satisfaction mean of 4.19, and a Top-2 proportion of 82.8%. By incorporating public experience into the formation of renewal schemes, this research provides a people-oriented and effective pathway for participation and feedback in the renewal of historic districts, while also offering methodological reference for the renewal of similar historic districts. Full article
(This article belongs to the Special Issue Landscape Architecture, Urban Design, and Interdisciplinary Urbanism)
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29 pages, 38014 KB  
Article
Early Anomaly Pre-Warning of Buried Pipelines via Dynamic Acceleration Signals: An ICEEMDAN-LSTM Framework
by Ying-Qing Guo, Zhi-Xin Zhu, Zhi-Heng Xia, Xu-Lei Zang and Jin-Bao Li
Sensors 2026, 26(11), 3463; https://doi.org/10.3390/s26113463 - 30 May 2026
Viewed by 458
Abstract
Structural health monitoring of buried pipelines is essential due to their exposure to corrosion, impact loads, and geotechnical disturbances, which may induce abnormal vibration responses. Acceleration signals provide direct and sensitive measurements of buried pipeline structural dynamic behavior, and are therefore suitable for [...] Read more.
Structural health monitoring of buried pipelines is essential due to their exposure to corrosion, impact loads, and geotechnical disturbances, which may induce abnormal vibration responses. Acceleration signals provide direct and sensitive measurements of buried pipeline structural dynamic behavior, and are therefore suitable for early anomaly identification. An acceleration-based intelligent framework integrating Improved Complete Ensemble Empirical Mode Decomposition with Adaptive Noise (ICEEMDAN) and a Long Short-Term Memory (LSTM) network is proposed for buried pipeline condition recognition. First, the raw acceleration signals are decomposed into a set of intrinsic mode functions (IMFs) using ICEEMDAN to enhance time–frequency resolution and isolate weak transient impact components associated with buried pipeline structural anomalies. Subsequently, multi-scale features extracted from the IMFs are fused and fed into an LSTM network to capture temporal dependencies and perform supervised health state classification. Experimental results demonstrate that the proposed framework achieves an F1-score of 0.70 and a Precision–Recall AUC of 0.72 for identifying anomalies. Furthermore, cross-validation utilizing multi-source field data (dynamic acceleration and quasi-static strain) confirms the model’s physical interpretability and its stable performance under severe noise interference. The results validate the feasibility of combining advanced signal decomposition with deep learning techniques for buried pipeline anomaly pre-warning, providing a rigorous methodological basis for the safe operation of critical energy infrastructures. Full article
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22 pages, 2786 KB  
Article
A Low-Cost Single-Channel EEG Brain–Computer Interface for Decoding Binary Commands from Self-Generated Emotional States
by José Javier Ruiz Calero, Gabriel Mauricio Ramírez Villegas, Jaime Díaz-Arancibia and Ana Bustamante-Mora
Appl. Sci. 2026, 16(11), 5423; https://doi.org/10.3390/app16115423 - 29 May 2026
Viewed by 263
Abstract
Brain–computer interface (BCI) systems aim to establish direct communication pathways between neural activity and external devices, enabling interaction without relying on conventional neuromuscular mechanisms. This study investigates the feasibility of decoding binary decisions (“Yes”/”No”) from self-generated cognitive–emotional modulation patterns using a single-channel low-cost [...] Read more.
Brain–computer interface (BCI) systems aim to establish direct communication pathways between neural activity and external devices, enabling interaction without relying on conventional neuromuscular mechanisms. This study investigates the feasibility of decoding binary decisions (“Yes”/”No”) from self-generated cognitive–emotional modulation patterns using a single-channel low-cost EEG device. The proposed approach evaluates whether internally generated modulation strategies can produce distinguishable neural activity suitable for BCI applications under constrained acquisition conditions. EEG signals were recorded from two participants using a consumer-grade headset while they responded to questions through intentional internal modulation associated with affirmative and negative responses. The recorded signals were preprocessed, and multiple feature representations were extracted, including raw temporal data, cepstral coefficients, spectral power, and continuous wavelet transform (CWT) features. Several machine learning and deep learning models, including convolutional neural networks (CNN), long short-term memory networks (LSTM), and support vector machines (SVM), were trained and evaluated using hold-out and stratified k-fold validation strategies. The best performance was achieved by a CWT-based CNN model, reaching an average accuracy of 80.5%, significantly above chance level. Additional models, including CEP-CNN and RAW-LSTM, achieved competitive results, highlighting the relevance of feature representation in EEG-based classification tasks. The results demonstrate that internally generated modulation patterns can produce distinguishable EEG responses, even when using low-cost single-channel hardware. Although the limited number of participants constrains statistical generalization, this work serves as a proof-of-concept and provides a reproducible experimental pipeline for future studies. Overall, the findings support the development of accessible, scalable, and user-centered BCI systems based on internally generated neural modulation strategies, contributing to more natural interaction paradigms in EEG-based communication systems. Full article
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49 pages, 3542 KB  
Perspective
The DIME Architecture: A Unified Operational Algorithm for Neural Representation, Dynamics, Control and Integration
by Ionel Cristian Vladu, Nicu George Bîzdoacă, Ionica Pirici, Tudor-Adrian Bălșeanu and Eduard Nicușor Bondoc
Appl. Sci. 2026, 16(11), 5380; https://doi.org/10.3390/app16115380 - 27 May 2026
Viewed by 435
Abstract
Contemporary neuroscience has generated extensive empirical insights into perception, memory, prediction, valuation, and consciousness. However, it still lacks an explicit operational architecture capable of explaining how these processes emerge from a unified computational mechanism. This work introduces DIME (Detect–Integrate–Mark–Execute), a unified operational architecture [...] Read more.
Contemporary neuroscience has generated extensive empirical insights into perception, memory, prediction, valuation, and consciousness. However, it still lacks an explicit operational architecture capable of explaining how these processes emerge from a unified computational mechanism. This work introduces DIME (Detect–Integrate–Mark–Execute), a unified operational architecture in which perception, memory, valuation, and conscious access are treated as components of a single recurrent computational cycle. The framework is organized around four core elements: engrams, defined as distributed recurrent neural structures that support multiple activation trajectories rather than static memory traces; execution threads, representing temporally extended, causally coherent trajectories of neural activity; marker systems, corresponding to neuromodulatory and limbic mechanisms that regulate value, selection, plasticity, and trajectory competition; and hyperengrams, large-scale integrative states associated with global coordination and conscious access. Within this formulation, DIME provides a mapping between local neural assemblies, temporal sequence dynamics, value-based modulation, and large-scale network integration. Rather than treating perception, memory, and decision-making as partially independent processes, the framework interprets them as different expressions of a single operational loop acting across multiple spatial and temporal scales. The proposed architecture is consistent with empirical findings on hippocampal indexing, recurrent cortical processing, neuromodulatory control, and large-scale network dynamics, while remaining sufficiently general to support applications in artificial intelligence and robotics. Unlike frameworks centered on prediction, memory storage, or global broadcasting, DIME proposes that cognition arises from the recurrent interaction between executable representational structures, trajectory-based processing, value-guided selection, and dynamic large-scale integration. The framework generates explicit and falsifiable predictions regarding context-dependent neural trajectories, marker-mediated state transitions, and large-scale network reconfiguration. In this sense, DIME is not intended as a metaphorical synthesis, but as a testable architectural hypothesis for neuroscience and biologically inspired cognitive systems. Beyond theoretical neuroscience, the framework is also positioned as a transferable design-level reference model for adaptive AI systems, autonomous robotics, and cognitively informed engineering architectures operating in dynamic environments. Full article
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23 pages, 7474 KB  
Article
A Predict–Optimize–Evaluate Framework for Sustainable Traffic Safety Resource Allocation: LSTM Forecasting with Triangulated Enforcement Elasticity in Saudi Arabia
by Majed H. Moosa, Fawaz Alharbi, Meshal Almoshaogeh, Osama M. Irfan and Walid M. Shewakh
Sustainability 2026, 18(11), 5316; https://doi.org/10.3390/su18115316 - 25 May 2026
Viewed by 264
Abstract
Road traffic crashes remain a global public health burden and a persistent resource allocation problem that undermines progress toward the sustainable development of safe, equitable mobility systems. Saudi Arabia’s Vision 2030 targets fewer than 10 fatalities per 100,000 population, a goal aligned with [...] Read more.
Road traffic crashes remain a global public health burden and a persistent resource allocation problem that undermines progress toward the sustainable development of safe, equitable mobility systems. Saudi Arabia’s Vision 2030 targets fewer than 10 fatalities per 100,000 population, a goal aligned with United Nations Sustainable Development Goal 3.6 (halving road traffic deaths) and SDG 11.2 (safe and sustainable transport), yet a gap persists between crash prediction research and how agencies deploy enforcement resources. This paper builds a closed-loop predict–optimize–evaluate framework connecting Long Short-Term Memory (LSTM) neural networks to a goal-distance gap metric and constrained optimization, feeding forecast outputs directly into enforcement scheduling decisions. Using monthly casualty data from official Saudi sources covering the entire kingdom (all 13 administrative regions) from 2010 through 2024 (N = 42,856 fatal and serious injuries across 180 monthly observations), we validate LSTM forecasting against five benchmarks plus a GRU and a Transformer baseline, apply gap analysis as a standardized goal-distance metric, optimize enforcement allocation with triangulated elasticity estimates, and evaluate past policy reforms through multi-method counterfactual analysis. A headline finding is that roughly 28% of fatal and serious injuries cluster within only about 6% of weekly hours, creating an unusually concentrated target for enforcement reallocation. The LSTM achieves RMSE = 2.47 with MASE = 0.83, beating ARIMA by 35% while maintaining robustness during COVID disruptions (RMSE = 2.38 in the post-acute period 2022–2024 versus 2.61 in the acute period 2020–2021). Temporal analysis confirms 28% of fatalities (95% CI: 26.0–30.0%) cluster within 6% of weekly hours. Enforcement elasticity triangulated from three independent sources converges at α ≈ 0.31 (90% CI: 0.25–0.40). The optimization model allocates 56% of enforcement resources to Thursday–Friday midnight-to-4 AM windows, projecting a 17.1% casualty reduction (90% CI: 13.5–20.6% under Monte Carlo uncertainty in α). Monte Carlo sensitivity analysis with 10,000 iterations confirms a median benefit-cost ratio of 1.88 (90% CI: 1.18–2.97), with P (BCR > 1.0) = 98.9%, using locally calibrated VSL = SAR 4.2 million (equivalent to approximately USD 1.12 million at the SAMA-pegged rate of 3.75 SAR/USD, in constant 2024 prices). Counterfactual evaluation finds that the post-2018-reform period was associated with a 22.1% casualty reduction (95% CI: 16.4–27.8%), with magnitude robust across four methods (LSTM counterfactual, Bayesian Structural Time-Series, Synthetic Control, and an inverse-variance-weighted synthesis of the three); we stress, however, that attribution to the driving reform itself cannot be cleanly separated from concurrent Saher camera expansion, public awareness campaigns, and trauma-care improvements. By translating prediction into evidence-based, resource-efficient enforcement, the framework supports sustainable road safety policy in middle-income and rapidly motorizing settings. Full article
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23 pages, 17549 KB  
Article
Deep Neighborhood-Similarity Preservation Hashing for Cross-Modal Retrieval
by Weigang Wang, Lintao Xian and Ziyuan Cui
Computers 2026, 15(6), 336; https://doi.org/10.3390/computers15060336 - 25 May 2026
Viewed by 154
Abstract
Due to low storage cost and fast query efficiency, cross-modal hashing has attracted considerable interest in multi-modal data retrieval. However, existing hashing methods face several challenges: one major challenge arises from the neglect of both local and non-local neighborhood structural relationships within multi-modal [...] Read more.
Due to low storage cost and fast query efficiency, cross-modal hashing has attracted considerable interest in multi-modal data retrieval. However, existing hashing methods face several challenges: one major challenge arises from the neglect of both local and non-local neighborhood structural relationships within multi-modal information, which makes it difficult to establish fine-grained semantic consistency associations between heterogeneous modalities. Additionally, the imbalance in the number of training samples limits the improvement of retrieval performance. To address these challenges, a Deep Neighborhood-similarity Preservation Hashing (DNsPH) method is proposed for cross-modal retrieval. To obtain the high-order statistical features of images, we first design a Context-aware Cross-layer Bilinear Fusion Network (C2BF-Net), which uses Long Short-Term Memory (LSTM) to model the context-dependent features of different convolutional layers. Furthermore, the image, text, and semantic labels information are fused through an adaptive weighting strategy to reconstruct the joint semantic similarity matrix to explore the fine-grained neighborhood structure between different modalities. Finally, we introduce a multi-similarity loss based on an adaptive margin to mining and weighting informative sample pairs, to alleviate the impact of sample imbalance on model training, and thereby generate more discriminative hash codes. Extensive experiments performed on the MIRFLICKR-25K and NUS-WIDE datasets demonstrate that DNsPH outperforms state-of-the-art cross-modal retrieval applications. Full article
(This article belongs to the Section AI-Driven Innovations)
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16 pages, 6247 KB  
Article
Single-Cell Transcriptomic and Metabolic Signatures in Exhausted and Classical Memory B Cells—An Exploratory Analysis in Systemic Lupus Erythematosus and Lupus Nephritis
by Litong Zhu, Taoyan Lin, Lai Yee Cheong, Jason K. H. Sher, Irene Y. L. Yam, Wynn Cheung, Susan Yung, Tak Mao Chan and Desmond Y. H. Yap
Biomedicines 2026, 14(6), 1188; https://doi.org/10.3390/biomedicines14061188 - 25 May 2026
Viewed by 632
Abstract
Aim: Disturbances in exhausted and classical memory B cells have been implicated in the pathogenesis of systemic lupus erythematosus (SLE) and lupus nephritis (LN), but the genetic regulation of their homeostasis remains poorly understood. Methods: We analyzed the single-cell RNA-seq data of peripheral [...] Read more.
Aim: Disturbances in exhausted and classical memory B cells have been implicated in the pathogenesis of systemic lupus erythematosus (SLE) and lupus nephritis (LN), but the genetic regulation of their homeostasis remains poorly understood. Methods: We analyzed the single-cell RNA-seq data of peripheral blood mononuclear cells (PBMCs) from the NIH SLE dataset (GSE135779) and another published LN single-cell RNA-seq dataset (dbGAP database accession code phs001457.v1.p1). Overlapping differentially expressed genes (DEGs) in exhausted and classical memory B cells from SLE and LN patients were identified, and their altered expression was validated in B cells obtained from LN patients. GO and KEGG analyses were used to analyze associated pathways. The relationships between exhausted and classical memory B cells and cellular metabolic pathways were also assessed. Results: Three DEGs (IFI44L, XAF1, and MX1) were detected in both exhausted and classical memory B cells, and their increased expression was verified in classical and exhausted memory B cells obtained from LN patients during remission. The protein–protein interaction network of the DEGs suggested that STAT1 showed the highest eigenvector centrality for these DEGs. IFI44L, XAF1 and MX1 were involved in distinct biological processes and immune pathways (especially JAK-STAT). Classical memory B cells showed higher expression of genes involved in sulfur metabolism (SQRDL and TST), amino sugar metabolism (GFPT1 and UAP1), and butanoate metabolism (ACADS and ACAT1), while exhausted B cells exhibited inverse relationships with these metabolic pathways. Conclusions: Altered expression of IFI44L, XAF1 and MX1 is associated with distinct metabolic signatures and immune pathways in exhausted and classical memory B cells in SLE and LN. Full article
(This article belongs to the Special Issue Epigenetic Regulation of Kidney Development)
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25 pages, 8629 KB  
Article
Pyroptosis-Related Gene Signatures and Immune Modulation in Ovarian Cancer: Insights from Multi-Omics and Machine Learning
by Rakesh Arya, Viplov Kumar Biswas, Hemlata Shakya and Jong-Joo Kim
Genes 2026, 17(5), 595; https://doi.org/10.3390/genes17050595 - 21 May 2026
Viewed by 467
Abstract
Background: Ovarian cancer (OVCA) remains the most lethal gynecologic malignancy, with poor prognosis largely due to late-stage diagnosis and therapy resistance. Pyroptosis, a pro-inflammatory form of programmed cell death, has recently emerged as a regulator of tumor progression and immune regulation. This study [...] Read more.
Background: Ovarian cancer (OVCA) remains the most lethal gynecologic malignancy, with poor prognosis largely due to late-stage diagnosis and therapy resistance. Pyroptosis, a pro-inflammatory form of programmed cell death, has recently emerged as a regulator of tumor progression and immune regulation. This study aimed to systematically profile pyroptosis-related genes and identify robust biomarkers for OVCA. Methods: Microarray data from the GSE54388 dataset were analyzed to characterize pyroptosis-related gene expression. Immune cell infiltration was assessed using xCell, and pathway enrichment was performed via Gene Set Enrichment Analysis (GSEA). Weighted Gene Co-expression Network Analysis (WGCNA) identified hub genes, followed by Gene Ontology (GO) and Reactome enrichment. Machine learning algorithms (Support Vector Machine, XGBoost, and Generalized Linear Model) were employed for feature selection and biomarker identification. Validation was conducted across independent bulk and scRNA-seq datasets, with GEPIA2 used to compare OVCA and normal samples and KMplot for survival analysis. Results: OVCA samples showed significantly reduced infiltration of CD4+ and CD8+ T cells, mast cells, monocytes, neutrophils, and immature dendritic cells compared to normal samples. GSEA revealed enrichment of cell cycle-related pathways, implicating pyroptosis-related genes as key regulators of mitotic progression. From 1097 differentially expressed genes, 22 pyroptosis-related DEGs (PYRDEGs) were identified, with nine hub genes (CASP1, CEP55, CHMP4C, HTRA1, IL18, MELK, PKM, PTX3, TNFSF13B) strongly associated with OVCA. Functional enrichment linked these genes to cytokinesis, inflammasome activity, and immune signaling. Machine learning consistently identified CEP55 as the core biomarker, demonstrating high diagnostic accuracy (AUC up to 0.972) and significant upregulation in OVCA samples. Correlation analysis linked CEP55 expression to altered immune cell populations, including positive associations with Th1 and class-switched memory B-cells and negative associations with iDCs, Tregs, and M2 macrophages. CEP55 was highly expressed across bulk and scRNA-seq datasets (cancer epithelial and CD8+ TEMRA cells) and negatively correlated with overall survival (OS) and progression-free survival (PFS). Conclusions: Pyroptosis-related genes play pivotal roles in OVCA pathogenesis. CEP55 emerges as a promising biomarker for early detection and a potential therapeutic target, bridging cell cycle regulation with immune modulation. Full article
(This article belongs to the Special Issue Computational Genomics and Bioinformatics of Cancer)
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22 pages, 1527 KB  
Article
Tomato Intake Improves Cognitive Performance and Modulates Functional Brain Networks in Healthy Adults: A Randomized Crossover Clinical Trial
by Ricardo López-Solís, Carolina Donat-Vargas, Patricia Ramírez-Carrasco, Rocío M. Gutiérrez-Romero, Maria Pérez, Magda Castellví, Beatriz Bosch, Camila Arancibia-Riveros, Alejandro Hinojosa-Moscoso, Carlos Laredo, Emma Muñoz-Moreno, Ana Maria Ruiz-Leon, Rosa Casas, Ramon Estruch, Anna Vallverdú-Queralt, Marina Corrado and Rosa M. Lamuela-Raventós
Antioxidants 2026, 15(5), 644; https://doi.org/10.3390/antiox15050644 - 19 May 2026
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Abstract
Tomatoes are the major dietary source of lycopene, a carotenoid that crosses the blood–brain barrier and exerts antioxidant and anti-inflammatory effects. However, the impact of tomato consumption on cognitive function in healthy adults remains unclear. This study assessed the effects of concentrated tomato [...] Read more.
Tomatoes are the major dietary source of lycopene, a carotenoid that crosses the blood–brain barrier and exerts antioxidant and anti-inflammatory effects. However, the impact of tomato consumption on cognitive function in healthy adults remains unclear. This study assessed the effects of concentrated tomato paste on cognitive performance and explored potential mechanisms, including brain-derived neurotrophic factor (BDNF) and functional brain connectivity. A randomized, two-period crossover trial (ClinicalTrials.gov: NCT05891977) was conducted in 47 healthy adults aged 40–55 years assigned to two 3-month interventions separated by a 1-month washout: (a) daily consumption of concentrated tomato paste (0.5 g/kg body weight) and (b) a lycopene-restricted control diet. Cognitive performance was evaluated using validated neuropsychological tests (d2-R, Face-Name Associative Memory Exam, Modified Wisconsin Card Sorting Test), alongside plasma lycopene and BDNF, and resting-state functional magnetic resonance imaging (fMRI). Forty-two participants completed the study. Tomato intake improved selective attention (concentration performance: +7.2 points; processing speed: +8.3 points) and associative memory (face-name matching: +0.8 points). Plasma BDNF showed a borderline increase with tomato intake (mean difference 15.2 ng/mL). Resting-state fMRI revealed changes in brain networks, including reduced connectivity in frontoparietal and auditory networks, contrasting with reductions in the dorsal attention network during the control period. These findings provide evidence that tomato consumption may support cognitive function and modulate brain connectivity in healthy middle-aged adults. Full article
(This article belongs to the Special Issue Role of Natural Antioxidants on Neuroprotection)
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Article
Research on Space-Time Data Prediction Model of Quantum Long Short-Term Memory Network Fusion
by Bing Han, Jian Kang, Meng Zhang and Qian Wu
Photonics 2026, 13(5), 477; https://doi.org/10.3390/photonics13050477 - 11 May 2026
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Abstract
This study proposes a novel hybrid prediction model (QGCN-LSTM) that combines Quantum Graph Convolutional Networks (QGCN) with classical Long Short-Term Memory (LSTM). The model takes space-time data as input and employs a hierarchical graph-based quantum encoding strategy. Specifically, classical spatial features are first [...] Read more.
This study proposes a novel hybrid prediction model (QGCN-LSTM) that combines Quantum Graph Convolutional Networks (QGCN) with classical Long Short-Term Memory (LSTM). The model takes space-time data as input and employs a hierarchical graph-based quantum encoding strategy. Specifically, classical spatial features are first aggregated into critical regional hubs, which are then mapped into the Hilbert space through a dense quantum encoding layer. Multi-scale features are extracted through the collaborative computation of QGCN and quantum gated recurrent units, and a quantum attention module is introduced to dynamically screen key information. Finally, the prediction results are generated through quantum measurement and a classical output layer. In the space-time data prediction task of urban traffic flow, a benchmark model system covering classical, cutting-edge, and traditional architectures was constructed. The experimental results show that QGCN-LSTM utilizes quantum entanglement gates to establish non-local road network associations, dynamically allocate feature weights to enhance the impact of critical time steps, and achieves deep compression of lines through quantum line pruning technology, effectively alleviating the common problem of “poor plateau” in quantum neural network training. In terms of prediction accuracy, the mean absolute error (MAE) of its key hub nodes is reduced by 34.1% compared to the graph convolution LSTM (GCN-LSTM) model, and the Spatial Correlation Index (SCI) is improved to 0.89. In addition, it also shows excellent performance in dynamic response, edge computing efficiency, and other aspects, meeting the real-time requirements of the traffic signal control system. This study provides an effective paradigm for the application of quantum collaborative architecture in complex spatiotemporal prediction tasks. Full article
(This article belongs to the Special Issue Recent Progress in Quantum Communication)
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