Search Results (721)

Caffeic acid phenethyl ester (CAPE), a polyphenol from propolis, is well recognized for its anti-inflammatory, antioxidant, antimicrobial, and osteogenic properties. This study aimed to develop macroporous bone scaffolds composed of a chitosan/agarose matrix reinforced with nanohydroxyapatite and enriched with stable CAPE derivatives to enhance their biomedical potential for applications in bone tissue engineering and regenerative medicine. A comprehensive evaluation of microstructural and biological properties of the produced scaffolds was conducted. The fabricated scaffolds exhibited high porosity (49–60%) with interconnected pores and compressive strength (1.2–1.8 MPa), closely resembling cancellous bone and indicating suitability for bone regeneration. They were biocompatible, promoted osteoblast adhesion, proliferation, and differentiation, and supported apatite deposition on their surfaces, demonstrating strong bioactivity and potential for implant osseointegration. Importantly, the scaffolds did not trigger excessive production of reactive oxygen or nitrogen species, suggesting a low risk of inflammatory responses. Additionally, CAPE-enriched scaffolds inhibited biofilm formation by Staphylococcus aureus and Staphylococcus epidermidis, reducing the risk of implant-associated infections. In summary, these CAPE-modified scaffolds integrate optimal microstructural and biological features, such as reducing oxidative stress and inhibiting biofilm formation, and thus offer a promising strategy for enhancing bone repair and regeneration in clinical applications. Full article

Despite their ecological importance and unique evolutionary history, reptiles remain underrepresented in immunological research. The innate immunity of the cottonmouth (Agkistrodon piscivorus), a semi-aquatic pit viper native to the southeastern United States, was characterized to provide insight into the molecular and cellular mechanisms underlying its first line of defense against pathogens. Plasma collected from wild A. piscivorus exhibited strong antibacterial activities against both Gram-negative and Gram-positive bacteria. In addition, plasma from A. piscivorus showed potent hemolytic activities in unsensitized sheep red blood cell (SRBC) hemolysis assays. This activity was concentration-, time-, and temperature-dependent. In addition, the hemolytic activity was inhibited by mild heat treatment (56 °C, 30 min) of plasma and proteases and also by EDTA, suggesting that the hemolytic activity was due to the presence of serum complement proteins. SDS-PAGE analysis of plasma proteins isolated from a mannan-agarose affinity column revealed the presence of a protein with a mass of 36 kDa, raising the strong possibility that the lectin pathway of complement activation is active. The EC₅₀ for hemolysis of SRBCs by plasma from A. piscivorus was approximately 10–100× lower than that of any other reptilian species described. This is the first study to characterize innate immunity in A. piscivorus. Full article

Streptococcus agalactiae (GBS) has emerged as one of the most prevalent bacterial pathogens causing severe economic losses in tilapia aquaculture due to its highly contagious and lethal nature. Nanobodies (Nbs), characterized by their small molecular size, enhanced tissue penetration, high tolerance, and exceptional antigen-binding affinity, represent a promising green alternative to conventional antibiotics. In the present study, the objective was to explore the potential of specific Nbs in the treatment of tilapia GBS disease. We first screened specific Nbs targeting the surface immunogenic (Sip) protein of GBS from a naïve phage display library, and a novel nanobody Nb30 was obtained. Nb30 was expressed in Escherichia coli and purified using the Ni-NTA Agarose column. Indirect ELISA showed that Nb30 had a high affinity against Sip and GBS in vitro. Moreover, Nb30 significantly reduced GBS colonization in the liver, spleen, and brain of GBS-infected tilapia. The survival rate in the control groups was 53%, whereas it was increased to 86% after treatment with 100 mg/kg Nb30. Transcriptome profiling revealed that Nb30 could modulate critical biological processes, including antioxidant defense, immune regulation, amino acid/protein synthesis, and energy metabolism in the liver tissues of GBS-infection tilapia. Notably, the expression levels of antioxidant enzymes (cat and gpx) were significantly up-regulated, and the TLR/MyD88/NF-κB pathway-related genes (tlr5, myd88, irak4, traf6, Rela, and NF-κB2) were significantly down-regulated after treatment with Nb30. Collectively, these findings establish a novel therapeutic strategy for controlling GBS infection in tilapia and provide evidence supporting the application of nanobodies as sustainable alternatives to antibiotics in aquaculture disease management. Full article

Blueberries (Vaccinium spp.) are valued for their nutritional benefits but face challenges in germplasm identification, phylogenetic analysis, and breeding due to their complex genetic background. Long Terminal Repeat Retrotransposons (LTR-RTs), major drivers of plant genetic diversity, offer a basis for the Inter-Retrotransposon Amplified Polymorphism (IRAP) system, which excels in germplasm identification, diversity assessment, and relatedness studies. Here, we developed a blueberry IRAP system using Ty1-copia reverse transcriptase sequences. From 25 core primers, we obtained 266 polymorphic loci (average PIC = 0.866). These IRAP markers fingerprinted 112 accessions and revealed relationships through Nei’s diversity index (H = 0.361), Shannon’s index (I = 0.533), AMOVA (9.33% among regions; 90.67% within populations; Nm = 1.50), UPGMA dendrograms (three clusters at 0.615 similarity), and PCoA, indicating weak geographic structure across Guiyang, Qiandongnan, and Bijie consistent with Nm = 1.50 (homogenizing gene flow). The dendrogram and PCoA indicate among-accession heterogeneity with weak geographic structuring across Guiyang, Qiandongnan, and Bijie, consistent with the AMOVA and gene-flow estimates. We also built a Molecular IDs database for differentiation. IRAP proved highly efficient for identification and analysis, matching SSR/SNP polymorphism levels while offering advantages like low-cost agarose gel resolution for detecting subtle clonal variants in polyploids—outperforming SSRs in field triage and complementing SNPs’ high throughput. This supports IP protection and breeding. Together with established SSR/SNP platforms, this IRAP approach can support IP protection and breeding as a complementary, cost-effective option. Full article

Galectin-3 (Gal-3) is a histologic marker of pancreatic cancer and a potential therapeutic target. This study aimed to characterize a novel sulfated agarose-derived oligosaccharide (DP9) from marine algae, Gracilaria lemaneiformis, evaluate its Gal-3 inhibitory activity, and investigate its anti-pancreatic cancer mechanisms. Through controlled acid hydrolysis, a series of odd-numbered oligosaccharides (DP3-11) were obtained, in which DP9 showed the strongest Gal-3 inhibition in hemagglutination assays. Structural analysis confirmed DP9’s unique composition including an alternating β (1→4)-D-galactose and α (1→3)-3,6-anhydro-L-galactose backbone, featuring partial 6-O-methylation on β-D-galactose and 6-O-sulfation on 3,6-anhydro-α-L-galactose residues. Molecular docking revealed DP9’s binding to Gal-3’s carbohydrate recognition domain through key hydrogen bonds (His158, Arg162, Lys176, Asn179 and Arg186) and hydrophobic interactions (Pro117, Asn119, Trp181 and Gly235), with the sulfate group enhancing binding affinity. In vitro studies demonstrated DP9’s selective anti-pancreatic cancer activity against BxPC-3 cells, including inhibition of cell proliferation; S-phase cell cycle arrest; induction of apoptosis; and suppression of migration and invasion. Mechanistically, DP9 attenuated the Gal-3/EGFR/AKT/FOXO3 signaling pathway while showing minimal cytotoxicity to normal cells. This study first demonstrated that agarose-derived odd-numbered oligosaccharides (DP9) can serve as effective Gal-3 inhibitors, which proved its potential as a marine oligosaccharide-based therapeutic agent for pancreatic cancer. Full article

Compared with capillary electrophoresis (CE), gel electrophoresis (GE) is a traditional method for the analysis of nucleic acids because of its low cost, although the operation process is complicated. The electropherogram from CE can offer more information (e.g., DNA size and its concentration) for researchers. Based on the self-built integrated biochip GE system, we proposed a computational method that converts conventional agarose GE images into CE-like fluorescence profiles for enhanced DNA analysis. The gel images were processed using an image-based algorithm involving median filtering to remove background noise and pixel-wise intensity summation along the migration axis to generate one-dimensional records of electrophoretic separations. Each DNA band in the gel was thereby transformed into a distinct fluorescence peak, reflecting its migration distance and relative intensity. To further enhance resolution and peak separation, Gaussian modeling was applied to fit the fluorescence intensity distribution, providing smoother and more distinguishable spectral peaks. To validate the method, three periodontal pathogens—Porphyromonas gingivalis (P.g), Treponema denticola (T.d), and Tannerella forsythia (T.f)—were amplified using PCR and analyzed by gel electrophoresis. The method successfully identified distinct electrophoretic patterns for the three pathogens by using a 50 bp DNA ladder as an internal calibration reference. The results demonstrate that image-based reconstruction of electrophoretic data provides a reliable, quantitative, and visually interpretable representation of DNA migration, comparable to CE output. This approach bridges a gap between traditional GE and modern capillary systems, allowing for the semi-quantitative analysis of DNA fragments without specialized CE instrument. The proposed method offers a valuable analysis method for the separation of DNA, RNA, protein and polypeptides. Full article

Background: Polyacrylamide gel electrophoresis (PAGE) has long been used for lipoprotein analysis, enabling the separation and profiling of lipoprotein fractions such as LDL and HDL. However, conventional disc PAGE systems are limited by low throughput and inability to directly compare multiple samples under identical conditions. Alternative methods, including high-performance liquid chromatography and agarose gel electrophoresis, require specialized equipment and expertise, limiting their clinical utility. Methods: We present a colorimetric and fluorescence-based histidine-imidazole PAGE (HI-PAGE) system that provides rapid, cost-effective, and reproducible separation and profiling of lipoproteins in human serum. By combining electrophoretic separation with lipid-specific fluorescent staining using Nile Red, the fluorescence-based HI-PAGE (fHI-PAGE) not only visualizes distinct migration patterns of lipoprotein fractions, but also enables the quantification of LDL-cholesterol (LDL-C). Clear resolution of LDL and other lipoprotein fractions was achieved within 1 h without band distortion, allowing for direct comparison of multiple samples on a single gel. Results: We validated fHI-PAGE using serum from healthy individuals and patients, demonstrating that its fluorescence-based detection was more sensitive than conventional Sudan Black B staining while providing LDL-C estimates concordant with values calculated by the Friedewald formula. Moreover, fHI-PAGE proved advantageous in cases of hypertriglyceridemia, where Friedewald calculations are unreliable. Conclusions: These findings establish fHI-PAGE as a practical and clinically applicable platform for simultaneous lipoprotein profiling and LDL-C quantification. Full article

In recent years, seaweed-derived polysaccharides have gained recognition as renewed potent bioactive compounds with significant antibacterial and antiviral properties. These polysaccharides include carrageenan, agar, agarose, and porphyran from red seaweed; fucoidan, laminarin, and alginate (alginic acid) from brown seaweed; and ulvan from green seaweed. Their diverse and complex structures, shaped by sulfation patterns, glycosidic linkages, and monosaccharide composition, contribute to their broad-spectrum biological activities, including antimicrobial, immunomodulatory, and prebiotic functions. This review explores the structural characteristics of these marine polysaccharides, reported in vitro and in vivo antimicrobial activities, and the mechanisms underlying their antibacterial and antiviral effects. Additionally, the extraction, purification methods, and commercial applications of these bioactive polysaccharides are discussed. By integrating recent advances and highlighting their multifunctionality, this review underscores the translational promise of seaweed-derived polysaccharides as sustainable, natural agents in the global fight against antimicrobial resistance and infectious diseases. Full article

Optimizing the cultivation system is crucial for tissue culture. The culture of cryopreserved testicular tissues is of great importance for the germplasm preservation of endangered animals and especially to ensure high-quality and high-output livestock. In this study, we compared two cultivation systems (Agarose-Supported system and Direct Adherent system) by evaluating their effects on tissue morphology, cell proliferation, apoptosis, gene expression, and endocrine function in cryopreserved testicular tissues from 30-day-old calves. The testicular tissues were cultured for 18 and 27 days with three biological replicates per group, aiming to identify which system better supports tissue preservation, cellular viability, and spermatogenic differentiation. This allowed us to clarify how different cultivation systems influence the structural maintenance and developmental potential of immature bovine testicular tissues. Histological and gene expression analyses revealed that the Agarose-Supported system better preserved the seminiferous cord architecture and supported the development of the seminiferous epithelium compared to the Direct Adherent system. The Agarose system significantly reduced the apoptosis and enhanced the expression of some key genes, including spermatogonial stem cell (SSC) markers (GFRα-1, UCHL1), meiotic marker (SYCP3), mature sperm marker (CRISP1), and testicular somatic cell markers (STAR, SOX9, ACTA2). The Agarose-Supported system also benefited spermatogenic differentiation and testosterone secretion. These findings demonstrate that the Agarose-Supported system facilitates the in vitro development of spermatogenic cells and Leydig cells in post-cryopreserved immature bovine testicular tissues. Full article

Ethnographic collections often incorporate composite objects consisting of various materials, including wood, textiles and metals. These objects are vulnerable to deterioration when iron fastenings corrode under humid environments, and their removal is therefore essential for the long-term preservation of artifacts. This study investigates the efficacy of the chelating agents Desferrioxamine B (DFO-B) and ethylenediaminetetraacetic acid (EDTA), applied in different gel formulations, in cleaning wooden and textile mock-ups stained with iron corrosion products. Three gel types were explored: xanthan gum, agarose and Nanorestore extra-dry gel with medium water retention (nano-MWR). The results indicated that xanthan gum exhibited the highest cleaning effectiveness but posed risks of residue deposition and surface damage due to the required clearance process. Agarose and nano-MWR gels proved to be less effective but showed potential for achieving high chelator efficacy with repeated applications. Agarose enhanced the chelators’ efficacy on textiles, while nano-MWR gel performed better on even wooden surfaces. No chemical damage was detected for either substrate across gel applications. The study concludes that a single gel formulation does not achieve equivalent cleaning efficacy on the two substrates of composite objects with a defined number of applications. Agarose in a semi-rigid state enhances the efficacy of textile treatment and may achieve comparable results on wood after repeated applications. Alternatively, a combined approach using agarose for textiles and nano-MWR gel for wood may optimize chelator performance on composite artifacts. Full article

Renal cell carcinoma (RCC) is the most common form of kidney cancer in adults. Immunotherapy, such as the application of interleukin-2 (IL-2), is a crucial treatment. It is known that IL-2 is involved in the upregulation of the anti-tumor immune response; however, a direct action of IL-2 on RCC cells has not yet been demonstrated. In this project, we aimed to investigate the expression and the functionality of the IL-2Rα, IL-2Rβ, and IL-2Rγ subunits on the four human RCC cell lines A-498, ACHN, Caki-1, and Caki-2. The expression of the three subunit genes was investigated via PCR, agarose gel of PCR products, Western blot, and flow cytometry. IL-2R functionality was assessed in RCC cells cultured with or without rhIL-2 using MTT and BrdU assays to investigate cell viability and proliferation; LDH assays, Live-or-Dye staining, and Annexin V/PI staining to study cell death; and Western blot to detect apoptotic markers, cleaved PARP, and cleaved caspases 3 and 9. Expression of IL-2Rα, IL-2Rβ, and IL-2Rγ subunits in the four cell lines was observed at the protein level with Western blot. Flow cytometry confirmed the cell-surface expression of IL-2Rα, IL-2Rβ, and IL-2Rγ subunits. In addition, we observed that rhIL-2 influenced cell survival/proliferation and cell death, depending on the cell line. We conclude that IL-2R is functional in RCC cells and that rhIL-2 could be used as a therapeutic option to act directly on RCC cells. However, further studies are required to elucidate the signaling pathways triggered by the IL-2-receptor binding on RCC cells. Full article

The detection of allergens is essential for ensuring food safety, protecting public health, and providing accurate information to consumers. Wheat (Triticum aestivum L.) and maize (Zea mays L.) are recognized as important food allergens. In this study, novel PCR methods were developed for the reliable detection of wheat and maize allergens, including wheat high-molecular-weight glutenin subunit (HMW-GS) and low-molecular-weight glutenin subunit (LMW-GS), as well as three maize allergens, namely, Zea m 14, Zea m 8, and zein. Wheat and maize genomic DNA, as well as allergen genes, were examined during 60 min of baking at 180 °C and 220 °C. Agarose gel electrophoresis revealed degradation of genomic DNA and amplified PCR fragments in correlation with increasing baking temperature and time. For each target gene, the best primers were identified that could detect HMW-GS and LMW-GS genes in wheat samples and Zea m 14, Zea m 8, and zein genes in maize samples after baking at 220 °C for 60 min and 40 min, respectively. The results indicate that these PCR methods can be used for the reliable and sensitive detection of wheat and maize allergens in processed foods. Full article

The development of physiologically relevant three-dimensional (3D) culture systems is essential for modeling tumor complexity and improving the translational impact of cancer research. We established a 3D in vitro model of human hepatocellular carcinoma (HCC) using a marine collagen peptide-based (MCP-B) biomimetic hydrogel scaffold optimized for multicellular spheroid growth. Compared with conventional two-dimensional (2D) cultures, the MCP-B hydrogel more accurately recapitulated native tumor biology while offering simplicity, reproducibility, bioactivity, and cost efficiency. HCC cells cultured in MCP-B hydrogel displayed tumor-associated behaviors, including enhanced proliferation, colony formation, migration, invasion, and chemoresistance, and enriched cancer stem cell (CSC) populations. Molecular analyses revealed upregulated expression of genes associated with multidrug resistance; stemness regulation and markers; epithelial–mesenchymal transition (EMT) transcription factors, markers, and effectors; growth factors and their receptors; and cancer progression. The spheroids also retained liver-specific functions, suppressed apoptotic signaling, and exhibited extracellular matrix remodeling signatures. Collectively, these findings demonstrate that the 3D HCC model using MCP-B hydrogel recapitulates key hallmarks of tumor biology and provides a robust, physiologically relevant platform for mechanistic studies of HCC and CSC biology. This model further holds translational value for preclinical drug screening and the development of novel anti-HCC and anti-CSC therapeutics. Full article

The use of advanced wound dressings can significantly support the skin healing process by maintaining optimal conditions for tissue regeneration. In this study, foam-like dressings composed of agarose and chitosan, enriched with vitamin C, were developed using a simple and cost-effective freeze-drying method. Three types of chitosan with varying molecular weights (low, medium, high) were used to investigate their impact on the biological, physicochemical, and mechanical properties of the resulting foams. All fabricated biomaterials were biocompatible, non-toxic, and did not promote cell adhesion to their surfaces. The foams exhibited highly porous, hydrophilic microstructures with excellent fluid absorption capacity (~20 mL/g) and sustained vitamin C release over the first 24 h. Chitosan molecular weight had no significant effect on biological properties, but influenced samples’ wettability and mechanical parameters. The hydrophilic character of samples was observed in all tested biomaterials, with the strongest enhancement of hydrophilicity noted for the low molecular weight variant. The highest tensile strength was observed in samples prepared with medium molecular weight chitosan. The results indicate that among the analyzed variants, agarose-chitosan foam biomaterials containing medium molecular weight chitosan exhibited the most favorable properties, making them the most promising candidates for the treatment of wounds with excessive exudate. Full article

Little is known about cartilaginous endplate (CEP) mechanobiology or how it changes in a catabolic microenvironment, partly due to difficulties in conducting mechanotransduction in vitro. Recent studies have found blended collagen–agarose hydrogels to offer improved mechanotransduction in chondrocytes compared to agarose alone. It was hypothesized that blended collagen–agarose hydrogels would be sufficient to improve the mechanobiological response in CEP cells relative to that in agarose alone, while maintaining the chondrocyte phenotype and ability to respond to pro-inflammatory stimulation. Thus, human CEP cells were seeded into blended 2% agarose and 2 mg/mL type I collagen hydrogels, followed by culture with dynamic compression up to 7% and stimulation with TNF. Results confirmed CEP cells retained a rounded phenotype and high cell viability during culture in blended collagen–agarose hydrogels. Additionally, TNF induced a catabolic response through downregulation of pericellular marker COL6A1 and anabolic markers ACAN and COL2A1. No significant changes were seen due to dynamic compression, suggesting addition of collagen to agarose was not sufficient to induce mechanotransduction in human CEP cells in this study. However, blended collagen–agarose hydrogels increased stiffness by 4× and gene expression of key cartilage marker SOX9 and physioosmotic mechanosensor TRPV4, offering an improvement on agarose alone. Full article