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19 pages, 2510 KB  
Systematic Review
Phenotypic and Genotype Patterns of Antimicrobial Resistance in Non-Human Primates: An Overlooked “One Health” Concern
by Juan Wen, Samuel Kumi Okyere, Yujie Shi, Yu Qu and Chaoxi Chen
Antibiotics 2025, 14(10), 985; https://doi.org/10.3390/antibiotics14100985 - 30 Sep 2025
Viewed by 1268
Abstract
Non-human primates (NHPs) are close relatives of humans and can serve as hosts for many zoonotic pathogens. They play crucial role in spreading antimicrobial resistant bacteria (AMR) to humans across various ecological niches. The spread of antimicrobial resistance in NHPs may complicate wildlife [...] Read more.
Non-human primates (NHPs) are close relatives of humans and can serve as hosts for many zoonotic pathogens. They play crucial role in spreading antimicrobial resistant bacteria (AMR) to humans across various ecological niches. The spread of antimicrobial resistance in NHPs may complicate wildlife conservation efforts, as it may threaten domestic livestock, endangered species as well as human’s health. This review analyses the existing literature on the prevalence of AMR in NHP species, including Rhinopithecus roxellana, Macaca fascicularis, and Sapajus nigritus, to create awareness in all stake holders involve in the fight against AMR on the serious potential threats that these primates pose. Methods: We performed a comprehensive literature search using the PubMed (National Library of Medicine-NLM), Scopus (Elsevier), Web of Science Core Collection (Clarivate Analytics), Springer Link (Springer), and Science Direct (Elsevier) databases until January, 2025. The search strategy combined terms from the areas of non-human primates, antibiotic resistance, antimicrobial resistance, and antibacterial resistance genes (ARGs). Studies that isolated bacteria from NHPs and assessed phenotypic resistance to specific antibiotics as well as studies that identified ARGs in bacteria isolated from NHPs were included. Data were synthesised thematically across all included studies. Results: A total of 37 studies were included (explained as Cercopithecidae (n = 23), Callithrix (n = 6), Cebidae (n = 4), Hominidae (n = 3), and Atelidae (n = 1)). The results showed that the most common ARB across the various NHPs and geographical settings was Staphylococcus spp. (45.95%) and Escherichia spp. (29.73%). The tested antibiotics that showed high levels of resistance in NHPs included Tetracycline (40.54%), Ciprofloxacin (32.43%), and Erythromycin (24.34%), whereas ermC, tetA, tetM, aadA, aph (3″)-II, and qnrS1 were the most widely distributed antibiotic resistance genes in the studies. Conclusion: NHPs are potential natural reservoirs of AMR, therefore global policy makers should consider making NHPs an indicator species for monitoring the spread of ARB. Full article
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12 pages, 1678 KB  
Article
Molecular Surveillance of Plasmodium spp. Infection in Neotropical Primates from Bahia and Minas Gerais, Brazil
by Luana Karla N. S. S. Santos, Sandy M. Aquino-Teixeira, Sofía Bernal-Valle, Beatriz S. Daltro, Marina Noetzold, Aloma Roberta C. Silva, Denise Anete M. Alvarenga, Luisa B. Silva, Ramon S. Oliveira, Cirilo H. Oliveira, Iago A. Celestino, Maria E. Gonçalves-dos-Santos, Thaynara J. Teixeira, Anaiá P. Sevá, Fabrício S. Campos, Bergmann M. Ribeiro, Paulo M. Roehe, Danilo Simonini-Teixeira, Filipe V. S. Abreu, Cristiana F. A. Brito and George R. Albuquerqueadd Show full author list remove Hide full author list
Pathogens 2025, 14(8), 757; https://doi.org/10.3390/pathogens14080757 - 31 Jul 2025
Viewed by 1322
Abstract
In Brazil, Plasmodium infections in non-human primates (NHPs) have been associated with P. simium and P. brasilianum, which are morphologically and genetically similar to the human-infecting species P. vivax and P. malariae, respectively. Surveillance and monitoring of wild NHPs are crucial [...] Read more.
In Brazil, Plasmodium infections in non-human primates (NHPs) have been associated with P. simium and P. brasilianum, which are morphologically and genetically similar to the human-infecting species P. vivax and P. malariae, respectively. Surveillance and monitoring of wild NHPs are crucial for understanding the distribution of these parasites and assessing the risk of zoonotic transmission. This study aimed to detect the presence of Plasmodium spp. genetic material in Platyrrhini primates from 47 municipalities in the states of Bahia and Minas Gerais. The animals were captured using Tomahawk-type live traps baited with fruit or immobilized with tranquilizer darts. Free-ranging individuals were chemically restrained via inhalation anesthesia using VetBag® or intramuscular anesthesia injection. Blood samples were collected from the femoral vein. A total of 298 blood and tissue samples were collected from 10 primate species across five genera: Alouatta caraya (25), Alouatta guariba clamitans (1), Callicebus melanochir (1), Callithrix geoffroyi (28), Callithrix jacchus (4), Callithrix kuhlii (31), Callithrix penicillata (175), Callithrix spp. hybrids (15), Leontopithecus chrysomelas (16), Sapajus robustus (1), and Sapajus xanthosthernos (1). Molecular diagnosis was performed using a nested PCR targeting the 18S small subunit ribosomal RNA (18S SSU rRNA) gene, followed by sequencing. Of the 298 samples analyzed, only one (0.3%) from Bahia tested positive for Plasmodium brasilianum/P. malariae. This represents the first detection of this parasite in a free-living C. geoffroyi in Brazil. These findings highlight the importance of continued surveillance of Plasmodium infections in NHPs to identify regions at risk for zoonotic transmission. Full article
(This article belongs to the Section Parasitic Pathogens)
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14 pages, 2109 KB  
Article
Safety and Immunogenicity of the Attenuated Yellow Fever Vaccine in Several Neotropical Primate Species
by Nayara Ferreira de Paula, André Duarte Vieira, Daniel Oliveira dos Santos, Lucas dos Reis de Souza, Carlyle Mendes Coelho, Herlandes Penha Tinoco, Paula Cristina Senra Lima, Rafael Otávio Cançado Motta, Valéria do Socorro Pereira, Marcelo Pires Nogueira de Carvalho, Camilla Bayma Fernandes, Adriana de Souza Azevedo, Matheus Soares Arruda, Thais Alkifeles Costa, Betania Paiva Drumond, Fabiola de Oliveira Paes Leme, Marcos da Silva Freire, Tatiane Alves da Paixão, Ayisa Rodrigues Oliveira and Renato Lima Santos
Vaccines 2025, 13(5), 487; https://doi.org/10.3390/vaccines13050487 - 30 Apr 2025
Cited by 4 | Viewed by 1811
Abstract
Background/Objective: Yellow fever (YF) is an acute infectious disease caused by the yellow fever virus which is transmitted by mosquitoes. Neotropical primates are susceptible to infection, which is often presented as epizootic outbreaks. The aim was to evaluate and characterize the immune response [...] Read more.
Background/Objective: Yellow fever (YF) is an acute infectious disease caused by the yellow fever virus which is transmitted by mosquitoes. Neotropical primates are susceptible to infection, which is often presented as epizootic outbreaks. The aim was to evaluate and characterize the immune response against YF in different species of neotropical primates from the Belo Horizonte Zoo. Methods: Vaccine 17DD was administered to 24 neotropical primates, with a single subcutaneous dose. Clinical exams, RNAemia, and detection of IgG and neutralizing antibodies against YFV were performed. In addition, an ethogram was performed to assess clinical changes and animal welfare. Results: At 4 days post-vaccination, RNAemia was detected in nine animals. There was seroconversion and persistence of immune response in Alouatta guariba clamitans, Sapajus xanthosternos, Saguinus imperator and Aotus infulatus. However, the vaccine was not immunogenic for Lagothrix cana. In Pithecia irrorata seroconversion did not persist long term, while the Ateles sp. had a transient immune response. No significant clinical manifestations were observed in any of the vaccinated animals. Conclusions: This study demonstrated a safe, immunogenic and persistent immune response induced by the attenuated 17DD vaccine strain in A. guariba clamitans, S. xanthosternos, S. imperator, and A. infulatus. Full article
(This article belongs to the Special Issue A One-Health Perspective on Immunization Against Infectious Diseases)
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15 pages, 1087 KB  
Article
Factors Modulating the Occurrence of the Selective-Value Effect in Tufted Capuchin Monkeys (Sapajus spp.)
by Alessandra D’Onofrio, Serena Gastaldi and Elsa Addessi
Animals 2025, 15(3), 453; https://doi.org/10.3390/ani15030453 - 6 Feb 2025
Viewed by 1920
Abstract
During foraging decisions, animals often make irrational choices. The selective-value effect refers to the lack of preference for an option consisting of one highly preferred item plus one less preferred item compared to a single highly preferred item. A similar bias is the [...] Read more.
During foraging decisions, animals often make irrational choices. The selective-value effect refers to the lack of preference for an option consisting of one highly preferred item plus one less preferred item compared to a single highly preferred item. A similar bias is the less-is-better effect, in which individuals prefer a single highly preferred item rather than an option that includes both a highly preferred item and a less preferred one. Here, we investigated the occurrence of these decisional biases in twelve tufted capuchin monkeys (Sapajus spp.) by exploring, for the first time in this genus, both the role of the relative value of the highly vs. less preferred food and the length of the intertrial interval. Overall, capuchins made rational choices by preferring the mixed option over the single one. However, on an individual level, some capuchins exhibited the selective-value effect. Mirroring previous findings in apes, both the relative value of the highly vs. less preferred food and the length of the intertrial interval modulated capuchins’ preference for the mixed option. This study provides further insight into the factors influencing violations of rationality in primate food choices, suggesting that these decisions might reflect cognitive adaptations for optimizing sensory feedback and nutrient intake rather than being irrational. Full article
(This article belongs to the Section Zoo Animals)
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15 pages, 1654 KB  
Article
Comparative Genomic Hybridization (CGH) in New World Monkeys (Primates) Reveals the Distribution of Repetitive Sequences in Cebinae and Callitrichinae
by Vanessa Milioto, Vincenzo Arizza, Aiti Vizzini, Polina L. Perelman, Melody E. Roelke-Parker and Francesca Dumas
Biology 2025, 14(1), 22; https://doi.org/10.3390/biology14010022 - 29 Dec 2024
Cited by 2 | Viewed by 1761
Abstract
The intraspecies and interspecies Comparative Genomic Hybridization (CGH) between the closely related Cebidae species, capuchin monkeys (Cebus capucinus, Sapajus apella), and the tamarins (Saguinus mystax, Leontocebus fuscicollis) was performed to analyze their genomes. In particular, this approach determines [...] Read more.
The intraspecies and interspecies Comparative Genomic Hybridization (CGH) between the closely related Cebidae species, capuchin monkeys (Cebus capucinus, Sapajus apella), and the tamarins (Saguinus mystax, Leontocebus fuscicollis) was performed to analyze their genomes. In particular, this approach determines balanced and unbalanced repetitive DNA sequence distribution and reveals dynamics during evolution. Capuchin monkeys are considered the most ancestral group with conserved syntenies compared to the hypothetical ancestral New World monkeys’ karyotype. Also, more derived karyotypes of phylogenetically distant species from the Saguinus and Leontocebus genera are analyzed here. The distribution of repetitive sequences has been traditionally studied through classical staining methods of cytogenetics. It has been hypothesized that repeats are species-specific and their conservation across closely related species are also common; their role in the genome has been extensively studied even though its role in speciation is not well studied and understood. The CGH shows bright signals with balanced and imbalanced DNA involving different genome regions: such as predominantly repetitive DNA at centromeric positions, and interstitial distribution with extended blocks. Cross-species CGH demonstrated the origin of some heterochromatic regions and identified apomorphic heterochromatin expansion events. The uncovered distribution of repetitive sequences is analyzed from an evolutionary perspective to elucidate the genomic dynamics of the repetitive sequences at the level of chromosomal organization. Full article
(This article belongs to the Section Zoology)
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15 pages, 1767 KB  
Article
Using Social Network Analysis to Assess ‘Groupness’ in a Mixed-Species Zoo Exhibit of Tufted Capuchins (Sapajus apella) and Squirrel Monkeys (Saimiri sciureus)
by Sophia Daoudi-Simison, Phyllis Lee and Hannah M. Buchanan-Smith
Animals 2024, 14(23), 3360; https://doi.org/10.3390/ani14233360 - 22 Nov 2024
Cited by 2 | Viewed by 2557
Abstract
Mixed-species groups have been recorded in various primates, including tufted capuchin and squirrel monkeys. Measures of their ‘groupness’ are typically based on factors such as group stability, social interactions, proximity, or behavioural coordination. Social network analysis has become a useful tool for quantifying [...] Read more.
Mixed-species groups have been recorded in various primates, including tufted capuchin and squirrel monkeys. Measures of their ‘groupness’ are typically based on factors such as group stability, social interactions, proximity, or behavioural coordination. Social network analysis has become a useful tool for quantifying relationships among group-living individuals. Here, we apply social network analysis to two captive mixed-species groups of tufted capuchins and squirrel monkeys housed at the Living Links to Human Evolution Research Centre, Royal Zoological Society of Scotland, Edinburgh Zoo, UK. We conducted 183 h of focal observations (three hours per individual, excluding co-observations) and calculated association rates using a simple index ratio. Permutation t-tests were used to assess differences in the overall mixed-species network and network metrics according to species. While the two species exhibited some level of association, they formed separate clusters in the mixed-species networks; however, the East group had more balanced group sizes and showed some signs of closer inter-specific social ties compared to the West group. Our data indicate that, in captivity at least, while these groups co-exist in a small, shared space, they do not form cohesive mixed-species groups. We suggest caution in the assumption of mixed-species groups based on shared space only. Full article
(This article belongs to the Section Zoo Animals)
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12 pages, 1341 KB  
Article
Measurement of Salivary Cortisol in Two New World Primate Species
by Martina Stocker, Eoin P. O’Sullivan, Rupert Palme, Eva Millesi and Ruth Sonnweber
Biology 2023, 12(9), 1181; https://doi.org/10.3390/biology12091181 - 29 Aug 2023
Cited by 1 | Viewed by 2931
Abstract
Glucocorticoids (GCs) are mammalian steroid hormones involved in a variety of physiological processes, including metabolism, the immune response, and cardiovascular functions. Due to their link to the physiological stress response, GC measurement is a valuable tool for conservation and welfare assessment in animal [...] Read more.
Glucocorticoids (GCs) are mammalian steroid hormones involved in a variety of physiological processes, including metabolism, the immune response, and cardiovascular functions. Due to their link to the physiological stress response, GC measurement is a valuable tool for conservation and welfare assessment in animal populations. GC levels can be measured from different matrices, such as urine and feces. Moreover, especially in captive settings, measuring GCs from saliva samples proved particularly useful as those samples can be collected non-invasively and easily from trained animals. Salivary GC levels can be measured using a variety of analytical methods, such as enzyme immunoassays. However, it is crucial to validate the analytical method for each specific application and species when using a new matrix. Using high-pressure liquid chromatography and a cortisol enzyme immunoassay, we show that the main glucocorticoids secreted in the saliva of squirrel monkeys and brown capuchin monkeys are cortisol and cortisone. Our biological validation found the expected salivary cortisol level to decline throughout the day. Our findings support the reliability of salivary cortisol measurements and their potential to be used as a valid tool in research and welfare assessment for these non-human primates. Full article
(This article belongs to the Special Issue Research on Primate Endocrinology)
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23 pages, 3380 KB  
Article
A New Assessment of Robust Capuchin Monkey (Sapajus) Evolutionary History Using Genome-Wide SNP Marker Data and a Bayesian Approach to Species Delimitation
by Amely Branquinho Martins, Mônica Mafra Valença-Montenegro, Marcela Guimarães Moreira Lima, Jessica W. Lynch, Walfrido Kühl Svoboda, José de Sousa e Silva-Júnior, Fábio Röhe, Jean Philippe Boubli and Anthony Di Fiore
Genes 2023, 14(5), 970; https://doi.org/10.3390/genes14050970 - 25 Apr 2023
Cited by 15 | Viewed by 4868
Abstract
Robust capuchin monkeys, Sapajus genus, are among the most phenotypically diverse and widespread groups of primates in South America, with one of the most confusing and often shifting taxonomies. We used a ddRADseq approach to generate genome-wide SNP markers for 171 individuals from [...] Read more.
Robust capuchin monkeys, Sapajus genus, are among the most phenotypically diverse and widespread groups of primates in South America, with one of the most confusing and often shifting taxonomies. We used a ddRADseq approach to generate genome-wide SNP markers for 171 individuals from all putative extant species of Sapajus to access their evolutionary history. Using maximum likelihood, multispecies coalescent phylogenetic inference, and a Bayes Factor method to test for alternative hypotheses of species delimitation, we inferred the phylogenetic history of the Sapajus radiation, evaluating the number of discrete species supported. Our results support the recognition of three species from the Atlantic Forest south of the São Francisco River, with these species being the first splits in the robust capuchin radiation. Our results were congruent in recovering the Pantanal and Amazonian Sapajus as structured into three monophyletic clades, though new morphological assessments are necessary, as the Amazonian clades do not agree with previous morphology-based taxonomic distributions. Phylogenetic reconstructions for Sapajus occurring in the Cerrado, Caatinga, and northeastern Atlantic Forest were less congruent with morphology-based phylogenetic reconstructions, as the bearded capuchin was recovered as a paraphyletic clade, with samples from the Caatinga biome being either a monophyletic clade or nested with the blond capuchin monkey. Full article
(This article belongs to the Special Issue Primate Phylogeny and Genetics)
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8 pages, 528 KB  
Article
Prevalence and Molecular Characterisation of Blastocystis sp. Infecting Free-Ranging Primates in Colombia
by Silvia Rondón, Serena Cavallero, Andrés Link, Camila González and Stefano D’Amelio
Pathogens 2023, 12(4), 569; https://doi.org/10.3390/pathogens12040569 - 6 Apr 2023
Cited by 7 | Viewed by 2210
Abstract
Infection with Blastocystis sp. has been reported in free-living and captive non-human primates (NHPs); however, surveys on Blastocystis sp. from north-western South America are scarce. This study aimed to identify Blastocystis sp. in free-ranging NHPs living in Colombia. A total of 212 faecal [...] Read more.
Infection with Blastocystis sp. has been reported in free-living and captive non-human primates (NHPs); however, surveys on Blastocystis sp. from north-western South America are scarce. This study aimed to identify Blastocystis sp. in free-ranging NHPs living in Colombia. A total of 212 faecal samples were collected from Ateles hybridus, Cebus versicolor, Alouatta seniculus, Aotus griseimembra, Sapajus apella, and Saimiri cassiquiarensis. Smears and flotation were used for morphological identification. For samples microscopically classified as positive for Blastocystis sp., we used conventional PCR to amplify and sequence two regions of the SSU rRNA gene and used Maximum Likelihood methods and Median Joining Network analyses for phylogenetic analyses. Via microscopy, 64 samples were Blastocystis sp. positive. Through molecular analyses, 18 sequences of Blastocystis sp. subtype 8 (ST8) were obtained. Strain and allele assignment together with a comparative phylogenetic approach confirmed that the sequences were ST8. Alleles 21, 156, and 157 were detected. Median Joining network analyses showed one highly frequent haplotype shared by specimens from Colombia and Peru and close relationships between haplotypes circulating in NHPs from Colombia, Ecuador, Brazil, and Mexico. This survey could support the elaboration of a more accurate epidemiological picture of the Blastocystis sp. infecting NHPs. Full article
(This article belongs to the Special Issue Parasitic Diseases of Domestic, Wild, and Exotic Animals (Volume II))
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13 pages, 2183 KB  
Article
Follicular Atresia, Cell Proliferation, and Anti-Mullerian Hormone in Two Neotropical Primates (Aotus nancymae and Sapajus macrocephalus)
by Deise de Lima Cardoso, Diva Anélie de Araújo Guimarães, Pedro Mayor, Maria Auxiliadora Pantoja Ferreira, Leandro Nassar Coutinho and Frederico Ozanan Barros Monteiro
Animals 2023, 13(6), 1051; https://doi.org/10.3390/ani13061051 - 14 Mar 2023
Viewed by 3168
Abstract
This study evaluated the follicular atresia, cell proliferation, and anti-Mullerian hormone action in Aotus nancymae and Sapajus macrocephalus during three sexual phases (follicular, luteal, and gestational). Follicular quantification and immunolocalization of Caspase-3 protein, B-cell lymphoma 2 (BCL-2), proliferating cell nuclear antigen (PCNA), and [...] Read more.
This study evaluated the follicular atresia, cell proliferation, and anti-Mullerian hormone action in Aotus nancymae and Sapajus macrocephalus during three sexual phases (follicular, luteal, and gestational). Follicular quantification and immunolocalization of Caspase-3 protein, B-cell lymphoma 2 (BCL-2), proliferating cell nuclear antigen (PCNA), and anti-Mullerian hormone (AMH) were performed. A significant difference in the quantification between preantral and antral follicles, with a progressive decrease in the antrals, was identified. Protein and hormonal markers varied significantly between follicle cell types (A. nancymae p = 0.001; S. macrocephalus, p = 0.002). Immunostaining in the preantral and antral follicles was present in all sexual phases; for Caspase-3, in granulosa cells, oocytes, and stroma; for BCL-2, in granulosa cells, oocytes, and theca; and for PCNA and AMH, in oocytes and granulosa cells. The immunostaining for Caspase-3 was more expressive in the preantral follicles (follicular phase, p < 0.05), while that for BCL-2 and PCNA was more expressive in the antral follicles of the follicular phase. The AMH was more expressive in the primary and antral follicles of nonpregnant females, in both the follicular and luteal phases. Our results contribute to understanding the ovarian follicular selection, recruitment, and degeneration of these species. Full article
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24 pages, 1508 KB  
Article
Prioritizing Areas for Primate Conservation in Argentina
by Ilaria Agostini, Santiago José Elías Velazco, Juan Ariel Insaurralde, Romina Pavé, Ingrid Holzmann, Eduardo Fernández-Duque, María Paula Tujague, Silvana Peker, Martín M. Kowalewski and Mario Santiago Di Bitetti
Diversity 2022, 14(11), 982; https://doi.org/10.3390/d14110982 - 15 Nov 2022
Cited by 7 | Viewed by 6801
Abstract
Argentina lies within the southernmost distributional range of five neotropical primates, the brown howler monkey Alouatta guariba, the black-and-gold howler monkey Alouatta caraya, the black-horned capuchin Sapajus nigritus, the Azara’s capuchin Sapajus cay, and the Azara’s owl monkey Aotus [...] Read more.
Argentina lies within the southernmost distributional range of five neotropical primates, the brown howler monkey Alouatta guariba, the black-and-gold howler monkey Alouatta caraya, the black-horned capuchin Sapajus nigritus, the Azara’s capuchin Sapajus cay, and the Azara’s owl monkey Aotus azarae; the first three of which are globally threatened. These species occupy different ecoregions: the Alto Paraná Atlantic forest, the Araucaria moist forest, the humid Chaco, the Southern Cone Mesopotamian savanna, the Paraná Ffooded savanna, and the Southern Andean Yungas. The recently approved National Primate Conservation Plan of Argentina calls for identifying priority areas to focus conservation actions for these species. We used species distribution models to estimate species ranges and then used the Zonation software to perform a spatial conservation prioritization analysis based on primate habitat quality and connectivity to identify potential areas of importance at national and ecoregional levels. Only 7.2% (19,500 km2) of the area inhabited by primates in Argentina is under protection. Outside the current protected areas, the top-ranked 1% and 5% priority areas identified in our analysis covered 1894 and 7574 km2, respectively. The top 1% areas were in the Atlantic forest of Misiones province, where S. nigritus, A. guariba, and A. caraya are distributed, and in the humid portion of eastern Chaco and Formosa provinces, where A. azarae and A. caraya are present. The top 5% areas included portions of the Yungas, where S. cay is the only primate present. Priority areas in Chaco and Formosa provinces are particularly relevant because of the paucity of protected areas and the high deforestation rate. The endangered A. guariba population will benefit from the better protection of the priority areas of Misiones. The potential priority areas proposed herein, considered within a context of a broad participatory process involving relevant stakeholders and local people, will help guide new and innovative conservation policies and practices while supporting management objectives. Full article
(This article belongs to the Special Issue Ecology, Diversity, and Conservation of Primates)
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14 pages, 1581 KB  
Article
Mapping Retrotransposon LINE-1 Sequences into Two Cebidae Species and Homo sapiens Genomes and a Short Review on Primates
by Vanessa Milioto, Polina L. Perelman, Laura La Paglia, Larisa Biltueva, Melody Roelke and Francesca Dumas
Genes 2022, 13(10), 1742; https://doi.org/10.3390/genes13101742 - 27 Sep 2022
Cited by 7 | Viewed by 2572
Abstract
This work focuses on the distribution of LINE-1 (a Long Interspersed Nuclear Element) in primates and its role during evolution and as a constituent of the architecture of primate genomes. To pinpoint the LINE-1 repeat distribution and its role among primates, LINE-1 probes [...] Read more.
This work focuses on the distribution of LINE-1 (a Long Interspersed Nuclear Element) in primates and its role during evolution and as a constituent of the architecture of primate genomes. To pinpoint the LINE-1 repeat distribution and its role among primates, LINE-1 probes were mapped onto chromosomes of Homo sapiens (Hominidae, Catarrhini), Sapajus apella, and Cebus capucinus (Cebidae, Platyrrhini) using fluorescence in situ hybridisation (FISH). The choice of platyrrhine species are due to the fact they are taxa characterised by a high level of rearrangements; for this reason, they could be a useful model for the study of LINE-1 and chromosome evolution. LINE-1 accumulation was found in the two Cebidae at the centromere of almost all acrocentric chromosomes 16–22 and on some bi-armed chromosomes. LINE-1 pattern was similar in the two species but only for chromosomes 6, 8, 10, and 18, due to intrachromosomal rearrangements in agreement with what was previously hypothesised as through g banding. LINE-1 interstitial accumulation was found in humans on the 1, 8, 9, 13–15, and X chromosomes; on chromosomes 8, 9, and 13–15, the signal was also at the centromeric position. This is in agreement with recent and complete molecular sequence analysis of human chromosomes 8 and some acrocentric ones. Thus, the hypothesis regarding a link between LINE-1 and centromeres as well as a link with rearrangements are discussed. Indeed, data analysis leads us to support a link between LINE-1 and inter- and intrachromosomal rearrangements, as well as a link between LINE-1 and structural functions at centromeres in primates. Full article
(This article belongs to the Special Issue Chromosome Evolution and Karyotype Analysis)
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13 pages, 1435 KB  
Article
Recently Integrated Alu Elements in Capuchin Monkeys: A Resource for Cebus/Sapajus Genomics
by Jessica M. Storer, Jerilyn A. Walker, Catherine E. Rockwell, Grayce Mores, Thomas O. Beckstrom, Joseph D. Orkin, Amanda D. Melin, Kimberley A. Phillips, Christian Roos and Mark A. Batzer
Genes 2022, 13(4), 572; https://doi.org/10.3390/genes13040572 - 24 Mar 2022
Cited by 4 | Viewed by 4699
Abstract
Capuchins are platyrrhines (monkeys found in the Americas) within the Cebidae family. For most of their taxonomic history, the two main morphological types of capuchins, gracile (untufted) and robust (tufted), were assigned to a single genus, Cebus. Further, all tufted capuchins were [...] Read more.
Capuchins are platyrrhines (monkeys found in the Americas) within the Cebidae family. For most of their taxonomic history, the two main morphological types of capuchins, gracile (untufted) and robust (tufted), were assigned to a single genus, Cebus. Further, all tufted capuchins were assigned to a single species, Cebus apella, despite broad geographic ranges spanning Central and northern South America. In 2012, tufted capuchins were assigned to their genus, Sapajus, with eight currently recognized species and five Cebus species, although these numbers are still under debate. Alu retrotransposons are a class of mobile element insertion (MEI) widely used to study primate phylogenetics. However, Alu elements have rarely been used to study capuchins. Recent genome-level assemblies for capuchins (Cebus imitator; [Cebus_imitator_1.0] and Sapajus apella [GSC_monkey_1.0]) facilitated large scale ascertainment of young lineage-specific Alu insertions. Reported here are 1607 capuchin specific and 678 Sapajus specific Alu insertions along with candidate oligonucleotides for locus-specific PCR assays for many elements. PCR analyses identified 104 genus level and 51 species level Alu insertion polymorphisms. The Alu datasets reported in this study provide a valuable resource that will assist in the classification of archival samples lacking phenotypic data and for the study of capuchin phylogenetic relationships. Full article
(This article belongs to the Special Issue Mobile Elements in Phylogenomic Reconstructions)
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17 pages, 6563 KB  
Article
Individualized Target Training Facilitated Transfer of Group Housed Capuchin Monkeys (Sapajus apella) to Test Cubicles and Discrimination of Targets on Computer Touch Screens
by Sabrina Brando, Lillian Basom, Meredith Bashaw, Caitlin Druyor, Ellen Fonte and Roger Thompson
Animals 2021, 11(7), 2070; https://doi.org/10.3390/ani11072070 - 12 Jul 2021
Cited by 2 | Viewed by 5364
Abstract
Animals in captivity often experience fear, anxiety and aggression during non-voluntary procedures, leading to adverse behaviors and ineffective outcomes for both animals and caretakers. Negative reinforcement and punishment, often due to ignorance regarding animal learning, can hurt animal welfare. However, voluntary participation through [...] Read more.
Animals in captivity often experience fear, anxiety and aggression during non-voluntary procedures, leading to adverse behaviors and ineffective outcomes for both animals and caretakers. Negative reinforcement and punishment, often due to ignorance regarding animal learning, can hurt animal welfare. However, voluntary participation through positive reinforcement training (PRT) can decrease stress related to these procedures and increase desired behaviors. Our goal was to demonstrate the positive effects of “target training” on animal welfare by training 10 captive capuchin monkeys (Sapajus apella) in two experiments designed to facilitate movement from a group home enclosure to a test cubicle. In Experiment 1, each monkey was assigned an individualized target (a unique shape/color combination). In daily training sessions, the animal was rewarded with a click-sounding stimulus and a food reinforcer for (a) touching the target, (b) following the respective target into a test cubicle, and (c) touching progressively smaller targets until progressing to digitized images on a computer touch screen. All 10 animals learned to approach and touch their individual physical target in one or two sessions and were able to successfully transition this behavior to an image of their target on a touch screen, although they made more errors with the touch screen. In Experiment 2, the animals were presented with other animals’ targets and novel targets. The seven animals in this experiment all touched their target at higher-than-chance rates in Trial 1 without explicit discrimination training, but only five reached the learning criteria for the task (>83% correct for three consecutive testing days. These results demonstrate that target training can make voluntary movement from group housing to test cubicles easier and benefit future animal care and procedures. Full article
(This article belongs to the Special Issue Learning Theory Applied to the Welfare of Animals)
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Article
Trypanosoma rangeli Genetic, Mammalian Hosts, and Geographical Diversity from Five Brazilian Biomes
by Maria Augusta Dario, Márcio Galvão Pavan, Marina Silva Rodrigues, Cristiane Varella Lisboa, Danilo Kluyber, Arnaud L. J. Desbiez, Heitor Miraglia Herrera, André Luiz Rodrigues Roque, Luciana Lima, Marta M. G. Teixeira and Ana Maria Jansen
Pathogens 2021, 10(6), 736; https://doi.org/10.3390/pathogens10060736 - 11 Jun 2021
Cited by 22 | Viewed by 5151
Abstract
Trypanosoma rangeli is a generalist hemoflagellate that infects mammals and is transmitted by triatomines around Latin America. Due to its high genetic diversity, it can be classified into two to five lineages. In Brazil, its distribution outside the Amazon region is virtually unknown, [...] Read more.
Trypanosoma rangeli is a generalist hemoflagellate that infects mammals and is transmitted by triatomines around Latin America. Due to its high genetic diversity, it can be classified into two to five lineages. In Brazil, its distribution outside the Amazon region is virtually unknown, and knowledge on the ecology of its lineages and on host species diversity requires further investigation. Here, we analyzed 57 T. rangeli samples obtained from hemocultures and blood clots of 1392 mammals captured in different Brazilian biomes. The samples were subjected to small subunit (SSU) rDNA amplification and sequencing to confirm T. rangeli infection. Phylogenetic inferences and haplotype networks were reconstructed to classify T. rangeli lineages and to infer the genetic diversity of the samples. The results obtained in our study highlighted both the mammalian host range and distribution of T. rangeli in Brazil: infection was observed in five new species (Procyon cancrivorous, Priodontes maximum, Alouatta belzebul, Sapajus libidinosus, and Trinomys dimidiatus), and transmission was observed in the Caatinga biome. The coati (Nasua nasua) and capuchin monkey (S. libidinosus) are the key hosts of T. rangeli. We identified all four T. rangeli lineages previously reported in Brazil (A, B, D, and E) and possibly two new genotypes. Full article
(This article belongs to the Special Issue Molecular Epidemiology of Trypanosomes)
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