Search Results (903)

Background/Objectives: The Bedouins (nomads) and the Fellahin (farmers) of Jordan represent two distinct subpopulations, characterized by unique lifestyles, settlement patterns, and linguistic features. This study aims to estimate the frequency of 27 Y-STRs in these two Jordanian subpopulations, along with various forensic parameters and paternal lineage comparisons with neighboring populations. Methods: Twenty-seven Y-STRs were typed in two major Jordanian subpopulations: Bedouin nomads (n = 101) and Fellahin farmers (n = 98). The forensic and paternal genetic lineage parameters and Y-haplogroup predictions were estimated. In addition, we conducted multidimensional scaling (MDS) and centroid analyses based on the Fst distance matrix to compare the sampled communities with neighboring populations from the MENA region, East Africa, Southeast Europe, and South Asia. Results: The Y-haplogroup predictions revealed differences in the predicted lineage composition based on the Y-STR profiles. The predicted J1a2a1a2 haplogroup predominated among the Bedouins (74.3%), whereas the Fellahin displayed a more heterogeneous profile, with notable frequencies of J1 (40%) and J2 (17.3%). Furthermore, the Fellahin exhibited remarkable genetic diversity and significant gene flow, providing plausible evidence of kinship with neighboring Levantine and Arabian groups. In contrast, the Bedouins showed consistently lower diversity across multiple loci, indicating long-term tribal isolation and, therefore, the potential effects of genetic drift. The MDS and centroid analyses positioned the Fellahin among the genetically interconnected Middle Eastern populations, while the Bedouins were clustered with the Arabian Peninsula populations. Conclusions: Overall, the contrasting genetic signatures of the two Jordanian subpopulations reflect their settlement patterns and sociocultural practices. In addition, the Y-STR dataset generated in this study enhances the Jordanian forensic database and to extends our understanding of paternal lineage structures in the West Asian/Levantine region. Full article

Digital transformation in water conservancy and urban water utilities demands perception systems that are accurate, fast, and energy-efficient and maintainable over long service lifecycles at the edge. We present HydroSNN, a neuromorphic computer-vision framework that couples an event-driven sensing pipeline with a spiking-transformer backbone to support monitoring of canals, reservoirs, treatment plants, and buried pipeline networks. By reducing always-on compute and unnecessary data movement, HydroSNN targets sustainability goals in smart water infrastructure: lower operational energy use, fewer site visits, and improved resilience under harsh illumination and weather. HydroSNN introduces three novel components: (i) spiking temporal tokenization (STT), which converts asynchronous events and optional frames into latency-aware spike tokens while preserving motion cues relevant to hydraulics; (ii) physics-guided spiking attention (PGSA), which injects lightweight mass-conservation/continuity constraints into attention weights via a differentiable regularizer to suppress physically implausible interactions; and (iii) cross-modal self-supervision (CM-SSL), which aligns RGB frames, event streams, and low-cost acoustic/vibration traces using masked prediction to reduce annotation requirements. We evaluate HydroSNN on public water-surface and event-vision benchmarks (MaSTr1325, SeaDronesSee, DSEC, MVSEC, DAVIS, and DDD20) and report accuracy, latency, and an operation-based energy proxy. HydroSNN improves mIoU/F1 over strong CNN/ViT baselines while reducing end-to-end latency and the estimated energy proxy in event-driven settings. These efficiency gains are practically relevant for off-grid or power-constrained deployments and support sustainable development by enabling continuous, low-power monitoring and timely anomaly response. These results demonstrate that event-driven spiking vision, augmented with simple physics guidance, offers a practical and efficient solution for resilient perception in smart water infrastructure. Full article

Although hydrogen plays a crucial role in the EU’s strategy to reduce greenhouse gas emissions, its storage and transport are technically challenging. If ammonia is produced efficiently, it can be a promising hydrogen carrier, especially in decentralized and flexible conditions. The Horizon EU HySTrAm project addresses this problem by developing a small-scale, containerized demonstration plant consisting of (1) a short-term hydrogen storage container using novel ultraporous materials optimized through machine learning, and (2) an ammonia synthesis reactor based on an improved low-pressure Haber–Bosch process. This paper presents an initial version of a Python (v3.9)-based dashboard designed to visualize and optimize the simulation workflow of the ammonia synthesis process. Designed as a baseline for a future online, automated tool, the dashboard allows the comparison of three reactor configurations already defined through simulations and aligned with the upcoming experimental campaign: single tube, two reactors in parallel swing mode and two reactors in series. Pressures at the inlet/outlet, temperatures across the reactor, operation recipe and ammonia production over time are displayed dynamically to evaluate the performance of the reactor. Future versions will include optimization features, such as the identification of optimal operating modes, the reduction of production time, an increase of productivity, and catalyst degradation estimation. Full article

Background: Interpreting short tandem repeat (STR) profiles from low-template DNA (LT-DNA) requires consideration of the stochastic phenomena that can affect the reliability of genotypes. Although several probabilistic genotyping tools have been developed to model such uncertainties, most have only been used for direct comparisons between persons of interest and crime scene samples. Their application to kinship testing involving LT-DNA has received comparatively little attention. Methods: We evaluated the performance of two PGS, EuroForMix (EFM) and EFMrep, which support alternative hypotheses with relatedness, by comparing them with a standard paternity testing software (Familias) in 33 paternity cases involving LT-DNA samples categorised as ‘mildly’ (MD) or ‘highly’ (HD) degraded based on the quality of the STR profiles. The samples included formalin-fixed paraffin-embedded tissues, bone specimens, and stains collected from personal items. Pedigrees with (‘trio’) and without (‘duo’) maternal information were considered. Results: In MD and HD duos, the likelihood ratios (LRs) obtained with EFMrep were significantly higher compared to other software. In trios, Familias produced significantly higher LRs than PGS for MD samples, whereas the three software performed comparably for HD samples. Notably, in HD trios, EFMrep was the software most likely to maximise LR values, which were above 10,000 in 60% of the cases, compared to 50% of EFM and 40% of Familias. Conclusions: These findings provide preliminary evidence of the potential and limitations of using PGS for kinship assessments involving LT-DNA specimens. Full article

The 2022 global mpox outbreak represented a turning point in the Monkeypox virus (MPXV) epidemiology, highlighting the incredible capability of this virus to adapt to different conditions, also in a non-endemic context. To investigate the genomic dynamics of MPXV 2022 strains, we performed whole-genome sequencing of 40 clinical samples from 16 Italian patients across multiple anatomical sites and timepoints between May and December 2022. Combining single-nucleotide analysis with detailed investigation of short tandem repeats (STRs), we explored inter- and intra-host viral dynamics. We identified 19 STR loci located near or within genes involved in immune modulation and virion morphogenesis. While most STRs remained stable across patients, a subset displayed locus- or matrix-specific variation. Among these, STR-VII—embedded within the coding sequence of OPG153, an envelope-associated protein implicated in viral attachment—showed a 12-nucleotide in-frame deletion, resulting in the loss of four aspartic acid residues (Δ4D variant). Structural modeling indicated that this deletion slightly alters a disordered acidic loop without affecting the global fold, potentially modulating surface charge and immune recognition. Integrating STR profiling into genomic surveillance may enhance resolution in outbreak reconstruction and reveal subtle adaptive processes underlying poxvirus–host interaction and immune escape. Full article

Triticale (×Triticosecale Wittmack), a synthetic hybrid of wheat (Triticum spp.) and rye (Secale cereale), is a valuable dual-purpose crop for its high yield and stress tolerance. Introducing beneficial alien chromatin is crucial for expanding genetic diversity and improving cultivars. This study aimed to introduce Thinopyrum intermedium St genome chromatin into hexaploid triticale via trigeneric hybridization to develop novel germplasm. Six stable lines were selected from crosses between an octoploid wheat-Th. intermedium partial amphiploid line Maicao 8 and a hexaploid triticale cultivar Hashi 209. Agronomic traits were evaluated over two cropping seasons, revealing that the translocation lines exhibited superior agronomic performance compared to the parental triticales. These lines showed longer spikes, higher tiller numbers, and increased grain protein content, without compromising thousand-kernel weight. Cytogenetic analysis using sequential multicolor genomic in situ hybridization (smGISH), fluorescence in situ hybridization (FISH), and oligonucleotide probes, alongside validation with species-specific molecular markers, identified all six lines as St-R terminal translocation lines containing 14 rye chromosomes. Three lines carried a small terminal St segment on chromosome 1R, while the other three carried St segments on both 1RL and 4RS chromosomes. This work demonstrates that trigeneric hybridization is an effective strategy for inducing intergeneric recombination between Thinopyrum intermedium and rye chromosomes, leading to stable, small-segment terminal translocations. The developed St-R translocation lines represent a novel and valuable germplasm resource for enriching genetic diversity and breeding improved triticale cultivars with enhanced yield and quality traits. Full article

Body fluid identification at crime scenes is the first step in the forensic biology workflow, leading to the identification of the perpetrator and/or, in some cases, the victim. Current methods that are regularly used in forensic criminal evidence analysis utilize well-studied properties of each fluid as the foundation of the protocol. Among these approaches, alternative light sources, chemical reactions, lateral flow immunochromatographic tests, and microscopic detection stand out to identify the main body fluids encountered at crime scenes: blood, semen, and saliva. However, these often come with limits for specificity and sensitivity. There is also difficulty with fluid mixtures, environmental degradation, and destruction of the sample by the method used. Other fluids, like vaginal fluid and fecal matter, lack standardized protocols and require innovative ideas for accurate analysis without compromising the sample. Emerging technologies based on molecular methods have been the focus of body fluid research, with emphasis on topics such as mRNA, microRNA, epigenetics, and microbial analysis. Additional information alongside the determination of fluid origin could be an advantage from new molecular techniques, such as the identification of donors from SNP analysis, if regular STR analysis is not possible. Validation studies and the integration of such research have the potential to expand and enhance the laboratory practices of forensic science. This article will provide an overview of the current methods applied in the crime lab for body fluid identification before exploring active research in this field, pointing out the potential of these techniques for application in forensic cases to overcome present issues and expand the variety of body fluids identified. Full article

Deep vision foundation models such as DINOv3 offer strong visual representation capacity, but their direct deployment in medical image segmentation remains difficult due to the limited availability of annotated clinical data and the computational cost of full fine-tuning. This study proposes an adaptation framework called StrDiSeg that integrates lightweight bottleneck adapters between selected transformer layers of DINOv3, enabling task-specific learning while preserving pretrained knowledge. An attention-enhanced U-Net decoder with multi-scale feature fusion further refines the representations. Experiments were performed on two publicly available ischemic stroke lesion segmentation datasets—AISD (Non Contrast CT) and ISLES22 (DWI). The proposed method achieved Dice scores of 0.516 on AISD and 0.824 on ISLES22, outperforming baseline models and demonstrating strong robustness across different clinical imaging modalities. These results indicate that adapter-based fine-tuning provides a practical and computationally efficient strategy for leveraging large pretrained vision models in medical image segmentation. Full article

Background: Perforator flaps improved the reconstruction paradigm in the lower extremity, increasing coverage possibilities. This study aims to quantify how added perforators could enhance standard geometrical patterns (compared to random flaps). Methods: A total of 29 cases of lower limb soft tissue reconstruction (STR)—52% trauma, 21% osteomyelitis with skin fistulas, 21% healing disorders with unstable scarring and 6% cancer-related surgery—were performed in our institution between 2012 to 2023 with geometric random (GR) local flaps (34%), geometric perforator-enhanced (GP) flaps (32%) or pure propeller perforator (PP) flaps (34%), were retrospectively analysed. Patients with proximal thigh defects, a follow up of less than 3 months and those who received an axial, muscle or free flap were excluded. Geometric patterns (as length:width ratio (L:W)) were compared among groups, analysing healing outcomes and complications. Results: Leg defects were categorized into 62% distal, 14% middle, 14% proximal third and 10% distal thigh. No significant difference in defect size was detected among groups. Mean flap size was significantly larger for GP (70.5 cm², (p < 0.05)) and PP (74.4 cm², (p < 0.01)) than GR (53.7 cm²). The L:W ratio was significantly higher in GP (L:W 2.2:1, (p < 0.05)) and PP (L:W 2.8:1, (p < 0.01)) than in GR (1.5:1), but no significant difference was found between GP and PP. A reduced complications rate (partial flap loss, infection, healing, revision surgery, etc.) was observed in the GP group, when compared to GR. Conclusions: Flap geometric design can be significantly improved by the inclusion of perforators, maintaining spatial advantages with larger ductility and improved vascular solidity. Full article

Aspergillus fumigatus is the primary pathogen causing aspergillosis. Recent molecular population genetic studies have demonstrated that A. fumigatus exhibits high local genetic diversity, with evidence for limited differentiation among geographic populations. However, research on the impacts of geomorphological factors on shaping the population genetic diversity patterns of this species remains scarce. In this study, large-scale sampling and in-depth population genetic analysis were performed on soil-derived A. fumigatus from Guizhou Province, a representative karst landscape in southern China. This area is dominated by plateaus and mountains (accounting for 92.5% of the total area) and represents a classic example of conical karst landscapes. A total of 206 A. fumigatus strains were isolated from 9 sampling sites across Guizhou. Genetic diversity, genetic differentiation, and population structure of these strains were analyzed based on short tandem repeats (STRs) at 9 loci. The results revealed that A. fumigatus in the karst region of Guizhou harbors abundant novel alleles and genotypes, with high genetic diversity. Gene flow among geographical populations was infrequent, and significant genetic differentiation was detected between 30 of the 36 pairs of geographical populations where mountain ranges played a very important role, with the overall regional genetic differentiation reaching PhiPT = 0.061 (p = 0.001). Furthermore, the Guizhou populations showed significant differences from those reported in other regions worldwide. Surprisingly, only one of the 206 (0.49%) A. fumigatus isolates from this region exhibited resistance to the two medical triazoles commonly used for treating aspergillosis, and this resistance frequency was far lower than those reported in previous studies from other regions. We discuss the implications of our results for evolution and environmental antifungal resistance management in this important human fungal pathogen. Full article

Background: Short tandem repeats (STRs) are highly variable sequences present along the human genome, including the Y-chromosome. Y-STRs are exclusive to males, and the haplotypes they define are informative. Objectives: Twenty-six Y-STR loci were genotyped in 252 males from Northern Portugal to characterise Y-chromosome genetic variation using the Investigator Argus Y28 QS Kit. Methods: The kit mentioned was used to amplify male DNA samples, and capillary electrophoresis was used to analyze the fragments. Forensic parameters and haplotype diversity were computed, and samples’ haplogroups were predicted. A multidimensional scaling (MDS) plot was used to graphically represent the R_ST genetic distances, including reference populations. Results: A total of 250 different haplotypes were observed, including 248 unique ones, yielding a very high haplotype diversity (HD = 0.999) and discriminatory power (DP = 0.992). Haplogroup analysis indicated a predominance of R1b (58.7%), followed by E1b1b, I and J, pointing to a population history shaped by Mediterranean and North African gene flow. Comparative analysis between Portugal and 5 other populations showed greater genetic affinity with Spain and Italy, while revealing marked differentiation from Greece, Morocco, and former Portuguese colonies. Conclusions: The results confirm that the Northern Portuguese Population exhibits high Y-STR variability and robust forensic resolution. The dataset was submitted to the YHRD database, enhancing the representation of the Portuguese population and underscoring the value of the 26 locus panel for applications in forensic science, genealogy, and population genetics. Full article

An accurate DNA clock can strengthen cross-disciplinary inputs in the study of genealogies and ancient migrations. New Y-chromosome sequence data gathered from a Lotli Pai Kaundinya (LPK) Brahmin cohort whose staged migration from the Pontic Steppe to the West Coast of India was previously reported, are used here to generate a more precise DNA clock. The formula distinguishes Y-mutation rates for transitions and transversions and corrects for dropped mutations in sequence reads. The formula is validated against a baptismal tree covering over four centuries (0–704 YBP interval), a published STR-based chronology for this same cohort (704–5200 YBP) and a comparison to Y-Full formation times for mutations older than 3000 YBP. Using this more precise clock, we support a proposed “founder effect” expansion in Khorasan during 4300–3800 YBP using a novel phylogenetic branching metric; and use archeological, numismatic, toponymic, climate reconstruction and ancient textual data to explore religious and professional dimensions of cultural kinship with other communities believed to have interacted with the LPK during their long migration. The availability of more precise dating facilitates the integration of such secondary data types, resulting in an enriched and more plausible migration narrative. Full article

Background: Postmortem DNA identification of highly decomposed human remains is often limited by the availability and quality of conventional biological samples. Keratinized tissues, such as fingernails, represent a potentially valuable alternative due to their anatomical resistance to environmental degradation, however, their use as primary biological material for DNA profiling remains underreported in forensic practice. Case presentation: We report a case involving the recovery of a highly decomposed body of a missing woman, in which DNA samples were collected from a fingernail and a tooth. DNA extraction was performed using the PrepFiler Forensic DNA Extraction Kit for the fingernail sample and PrepFiler BTA Forensic DNA Extraction Kit for the tooth sample. No usable DNA profile was obtained from the tooth sample; however, the fingernail sample yielded a complete and high-quality STR profile with successful amplification across all 24 loci (GlobalFiler PCR Amplification Kit). Reference buccal swabs from the presumed biological parents were collected for subsequent kinship analysis. Discussion: Kinship analysis based on allele frequencies in the Croatian population resulted in a combined paternity index (CPI) corresponding to a probability of paternity of 99.99999812%, providing strong genetic support for the proposed identity of the deceased. Notably, this is the first documented forensic case in Croatia in which nail material served as the primary—and ultimately successful—biological sample for postmortem identification. Conclusions: This case highlights the evidentiary value of fingernails as a robust, accessible, and forensically valid DNA source in postmortem identification, particularly in cases of advanced decomposition where conventional biological materials are unavailable or degraded. Further studies involving larger sample sets and diverse postmortem conditions are needed to support the broader implementation of nail material in routine forensic identification workflows, particularly within the Croatian medico-legal context. Full article

Germline genetic testing plays a critical role in diagnosing inherited predispositions and increasingly guides therapeutic and surveillance choices—but becomes technically challenging after allogeneic hematopoietic stem cell transplantation (HSCT), when donor-derived DNA contaminates host tissues. To address this, we compared donor-derived DNA across three accessible tissues—buccal swab, nail, and eyebrow follicles—in recipients after hematopoietic stem cell transplantation using two orthogonal assays (34-SNP next-generation sequencing and a 27-marker short tandem repeat panel) and modeled clinical covariates that influence chimerism. Eyebrow follicles showed consistently low donor DNA (median 1% by NGS; 3% by STR) whereas buccal swabs and nails carried substantially higher donor fractions (+25 and +22 percentage points versus eyebrow, respectively; both p < 0.01). Across methods, STR yielded on average ≈6 percentage points higher donor fractions than NGS at low-level chimerism. Several transplant covariates correlated with chimerism: matched-related donors and a perfect HLA match (10/10) were each associated with lower donor DNA (≈12–14 and 15–20 percentage points, respectively); longer times since hematopoietic stem cell transplantation correlated with lower levels for nail samples, and donor–recipient sex match correlated with higher donor DNA (~7–8 percentage points). Even low-level chimerism can distort germline variant interpretation. We propose a pragmatic protocol for post-hematopoietic stem cell transplantation germline testing that prioritizes eyebrow follicles as the default tissue. An SNP-based quality control assay is used to flag unsafe donor fractions (≥ 5–10%) before comprehensive germline analysis, reducing the risk that chimeric donor DNA distorts germline variant interpretation. Full article

Positive relationships with teachers in early childhood are important for many areas of child development and achievement. This article aims to explore the links between teacher–child relationships and children’s executive functions. The study was conducted in one preschool, with a sample of 99 children aged 2 to 6 years. Six teachers assessed the quality of their relationships with the children using the Student–Teacher Relationship Scale (STRS) and the children’s executive functions using the Childhood Executive Functioning Inventory (CHEXI). The results of the study show that the quality of the teacher–child relationship is closely related to the teacher’s perception of the child’s executive function difficulties: a closer, less conflictual relationship is associated with fewer working memory and inhibition difficulties, while a conflictual relationship is associated with greater difficulties in the child’s executive functions. There is no statistically significant difference between boys and girls in terms of the relationship with the teacher and the expression of children’s executive functions, and in both groups, the quality of the relationship with the teacher can predict the child’s executive functions. Age is statistically significant in only one relationship parameter: older children are perceived as closer to the teacher and more likely to seek help. The data obtained from the study encourage further research and add to the growing body of evidence demonstrating the importance of teacher interaction for children’s development and education. Full article