Search Results (41)

This article presents an overview of selected research focusing on digital real-time simulation (DRTS) in the context of digital twin (DT) realization with the primary aim of enabling the intelligent fault diagnosis (FD) and condition-based monitoring (CBM) of electrical machines. The concept of standalone DTs in conventional multiphysics digital offline simulations (DoSs) is widely utilized during the conceptualization and development phases of electrical machine manufacturing and processing, particularly for virtual testing under both standard and extreme operating conditions, as well as for aging assessments and lifecycle analysis. Recent advancements in data communication and information technologies, including virtual reality, cloud computing, parallel processing, machine learning, big data, and the Internet of Things (IoT), have facilitated the creation of real-time DTs based on physics-based (PHYB), circuit-oriented lumped-parameter (COLP), and data-driven approaches, as well as physics-informed machine learning (PIML), which is a combination of these models. These models are distinguished by their ability to enable real-time bidirectional data exchange with physical electrical machines. This article proposes a predictive-level framework with a particular emphasis on real-time multiphysics modeling to enhance the efficiency of the FD and CBM of electrical machines, which play a crucial role in various industrial applications. Full article

To investigate how far-red (FR) light affects tobacco leaf growth, we established different light conditions, namely, CK: white (WL), T1: red (R), T2: red–white (R+WL) combination, T3: white–far-red (WL+FR) combination, and T4: white–red–far-red (WL+R+FR) combination; conducted supplemental light experiments on tobacco; and evaluated the growth of tobacco leaves by determining the biomass, size of the leaves, etc. In addition, the auxin (IAA) content and expression of leaf growth-related genes were examined to further reveal the mechanism of the FR regulation of tobacco leaf growth. The results show a maximum reduction in leaf area size of more than 90% and in fresh dry mass of more than 85%, while the chlorophyll content increased by more than 28%. in tobacco leaves exposed to FR compared with those exposed to white light. Meanwhile, levels of auxin IAA were increased by 113% (T3) and 17% (T4) under far-red light treatment. The anatomical structure of the tobacco leaves showed that FR reduced the number of epidermal cells in the leaves but increased the cell size. Subsequent findings revealed that FR’s impact on leaf growth was mediated through the PHYB–PIF7–IAA signaling pathway, wherein it regulated cell division and growth-related genes. This substantiates that FR diminishes the tobacco leaf area by impeding cell division rather than inhibiting cell growth. In this study, we explored the effects of far-red (FR) light on tobacco leaf growth changes and constructed a model of the related signaling pathways. Our results reveal a novel mechanism by which far-red light regulates the growth of tobacco leaves, elucidating how far-red light affects their growth and response to shading conditions. This finding not only provides a scientific basis for the optimization of high-density tobacco planting but also helps to improve photosynthetic efficiency and yield, providing strong support for the sustainable development of tobacco farming. Full article

Paulownia fortunei are economically important trees in China. A greening mutant was used to study greening by comparative transcriptomics and proteomics using leaf tissues from wild-type and greening mutant growing under normal conditions. Chlorophyll content analysis showed a decrease in the chlorophyll b content in the mutant line. Non-parametric transcriptome and proteome analyses were performed to screen for genes and proteins active in the regulation of P. fortunei greening. qRT-PCR was carried out to confirm 10 genes identified in the transcriptome. In the transcriptome analysis, the pathways associated with the yellow phenotype included tRNA amino acid biosynthesis, nitrogen metabolism and circadian rhythm as represented by the genes encoding Vals, gltx, aspS, NR, GluL, gdhA, phyB, CSNK2A and CSNK2B. The iTRAQ-based proteomics analysis indicated that photosynthesis and carotenoid biosynthesis were altered in the chlorophyll-deficient P. fortunei and petH, petF, atpF and Z-ISO were the key proteins dysregulated in the greening mutants compared to the wild-type. Together, the transcriptomic and iTRAQ analyses identified 10 DEGs that were perturbed in the greening mutants in the main pathways of photosynthesis, starch and sucrose metabolism, glutathione metabolism and peroxisome functions. PetJ, E3.2.1.21, GST and CAT were differentially regulated in the chlorophyll-deficient mutant. Full article

Background: Plant anthocyanins are a secondary metabolite widely distributed in the roots, stems, leaves, flowers, and fruits of plants, and their synthesis is significantly affected by light intensity. To investigate the synthesis of anthocyanins in Aglaonema commutatum’s leaves under different light intensities is essential. Methods: Using the commonly colored leaf A. commutatum variety ‘Emerald’ as the control group, and the red-leaf varieties ‘Red Ruyi’, ‘Angel’, and ‘Gilly Red’ as the experimental material, three light intensities were set: 254~368 μmol·m⁻²·s⁻¹ (CK), 588~678 μmol·m⁻²·s⁻¹ (T1), and 1125~1267 μmol·m⁻²·s⁻¹ (T2). Results: The changes in anthocyanin content and anthocyanin-related gene expression in the leaves of A. commutatum with different leaf colors under different light intensities were studied. The results show that the anthocyanin content of A. commutatum leaves had a different trend compared to A. commutatum with increasing light intensity, and the appropriate light intensity could significantly promote anthocyanin synthesis after a certain time, and vice-versa. The anthocyanin content of CK and the T1 treatment was 1.14–3.72 times that of the T2 treatment; the photosensitive genes PHYB, CRY, and UVR8 were correlated with the anthocyanin synthesis of ‘Angel’ and ‘Gilly Red’. The anthocyanin structural genes PAL, DFR, and ANS were correlated with the anthocyanin synthesis of ‘Red Ruyi’, ‘Angel’, and ‘Gilly Red’. The anthocyanin transcription factor bHLH was strongly correlated with the anthocyanin synthesis of ‘Angel’. Conclusions: As a byproduct from A. commutatum leaves with ornamental value and potential economic value, this study was helpful to understand the potential mechanism of A. commutatum’s leaves where light intensity regulates anthocyanin synthesis and accumulation. Full article

Background/Objectives: Maize (Zea mays L.), a crop of worldwide importance, owes its adaptability to diverse environments to its genetic variation. However, tropical maize exhibits intrinsic photoperiod sensitivity, limiting its adaptability to temperate regions. Photoperiod sensitivity significantly affects the flowering time and other agronomic traits, but the underlying molecular mechanisms remain poorly understood. In this study, the aim is to elucidate the transcriptional regulatory networks mediating photoperiod responses in tropical maize inbred line Su65, providing insights into improving photoperiod adaptability. Methods: RNA-seq analysis was carried out to investigate photoperiod-responsive genes and pathways in tropical line Su65 exposed to varying photoperiod conditions. Differential expression analysis, functional enrichment, and the construction of protein–protein interaction (PPI) networks were carried out to investigate transcriptional dynamics. Additionally, qRT-PCR was employed to confirm the expression patterns of key candidate genes and generate detailed temporal expression profiles. Results: A total of 1728 differentially expressed genes (DEGs) were identified, with significant enrichment in pathways such as stress responses, redox homeostasis, and secondary metabolite biosynthesis. A set of new key hub genes (such as Zm00001d048531, Zm00001d018821, Zm00001d034892, etc.) were identified through PPI network analysis. Temporal expression profiling of ZmPHYB1, ZmPHYC1, ZmFKF2, ZmGI2, and ZmPRR37a, the key genes involved in circadian rhythms, revealed distinct regulatory patterns of photoperiod-sensitive genes at different time points, highlighting their roles in flowering time regulation and developmental transitions. Conclusions: In this study, critical molecular networks underlying photoperiod sensitivity in tropical maize are uncovered and a foundation is provided for improving photoperiod adaptability through genetic improvement. By integrating RNA-seq and qRT-PCR, the research offers valuable insights into transcriptional dynamics and their role in maize development under photoperiodic regulation. Full article

Hypocotyl length is closely related to quality in seedlings and is an important component of plant height vital for plant-type breeding in cucumber. However, the underlying molecular mechanisms of hypocotyl elongation are poorly understood. In this study, the endogenous hormone content of indole acetic acid (IAA) and gibberellin (GA₃) showed an increase in the long hypocotyl Csphyb (phytochrome B) mutant AM274M compared with its wild-type AM274W. An RNA-sequencing analysis identified 1130 differentially expressed genes (DEGs), of which 476 and 654 were up- and downregulated in the mutant AM274M, respectively. A KEGG enrichment analysis exhibited that these DEGs were mainly enriched in the plant hormone signal transduction pathway. The expression levels of the pivotal genes CsGA20ox-2, in the gibberellin biosynthesis pathway, and CsYUCCA8, in the auxin biosynthesis pathway, were notably elevated in the hypocotyl of the mutant AM274M, in contrast to the wild-type AM274W. Additionally, GUS staining and a dual-luciferase reporter assay corroborated that the phytochrome-interacting factors CsPIF3/4 can bind to the E(G)-box motifs present in the promoters of the CsGA20ox-2 and CsYUCCA8 genes, thereby modulating their expression and subsequently influencing hypocotyl elongation. Consequently, this research offers profound insights into the regulation of hypocotyl elongation by auxin and gibberellin in response to light signals and establishes a crucial theoretical groundwork for cultivating robust cucumber seedlings in agricultural practice. Full article

Drought constitutes a noteworthy abiotic stressor, detrimentally impacting seed germination, plant development, and agricultural yield. In response to the threats imposed by climate change and water paucity, this study examined the morphological divergence and genetic governance of drought resilience traits at the germination stage in 196 rapeseed (Brassica napus L.) lines under both normal (0 MPa) and drought-induced stress (−0.8 MPa) scenarios. Our study showed that the composite drought tolerance D value is a reliable index for identifying drought resilience. Through a genome-wide association study (GWAS), we uncovered 37 significant SNP loci and 136 putative genes linked to drought tolerance based on the D value. A key discovery included the gene BnaA01g29390D (BnNCED3), encoding 9-cis-epoxycarotenoid dioxygenase, which exhibited significantly heightened expression levels in drought-resistant accessions (p < 0.01), underscoring its potential as a positive drought stress regulator and a suitable candidate for genetically enhancing drought resilience. Moreover, we pinpointed four stress-reactive transcription factors (BnaA07g26740D, BnaA07g26870D, BnaA07g26910D, and BnaA07g26980D), two E3 ubiquitin-protein ligases (BnaA05g22900D and BnaC06g28950D), two enzymes (BnaA01g29390D and BnaA03g48550D), and two photosystem-associated proteins (BnaA05g22950D and BnaC06g28840D) as vital components in drought response mechanisms. The construction of a regulatory network reveals an ABA-dependent pathway (NCED3/RGLG5/IDD14) that contributes to drought tolerance in rapeseed seedlings, alongside the involvement of a drought avoidance strategy (APRR6/PHYB). The SNPs and genes unveiled in this study offer a substantial theoretical foundation for subsequent investigations targeting genetic improvement for drought resilience during seed germination in rapeseed. Full article

Hydrangea macrophylla, a celebrated ornamental worldwide, thrives in semi-shaded growth environments in its natural habitat. This study utilizes Hydrangea macrophylla ‘Endless Summer’ as the experimental material to delve into its molecular mechanisms for adapting to semi-shaded conditions. Transcriptome analysis was conducted on leaves from four different natural light growth scenarios, showcasing phenotypic variations. From each sample, we obtained over 276,305,940 clean reads. Following de novo assembly and quantitative assessment, 88,575 unigenes were generated, with an average length of 976 bp. Gene ontology analysis of each control group elucidated the terms associated with the suitable environmental conditions for normal growth, development, and flowering, such as “reproductive bud system development” and “signal transduction”. The exploration of gene interactions and the identification of key genes with strong connectivity were achieved by constructing a protein–protein interaction (PPI) network. The results indicate that hydrangea grows vigorously and blooms steadily under semi-shaded conditions; the photosynthetic efficiency of hydrangea is stabilized through genes related to photosynthesis, such as PHYB, PSBR, FDC, etc. Hormone signal transduction genes like PIN3, LAX2, TIF6B, and EIN3 play important roles in responding to environmental stimulation and regulating growth and development, while genes such as SOC1, COL4/5/16, and AGL24 promote flowering. The expression of genes such as BGLUs and TPSs provides additional energy substances to support flowering. Full article

Photomorphogenic development in seedlings may be diagnostic of future plant performance. In this report, we characterize the Thai Oakleaf lettuce genotype, as it exhibited abnormalities in photomorphogenic development that were the most conspicuous under red light, including defects in hypocotyl growth inhibition, decreased cotyledon expansion, and constitutive shade avoidance tendencies. These observations are consistent with defects in red light sensing through the phytochrome B (phyB) photoreceptor system. This genotype is sold commercially as a heat-tolerant variety, which aligns with the evidence that phyB acts as a thermosensor. Full article

This review synthesizes the current understanding on the dynamic influence of light on the developmental morphology of woody plants. It explores the regulatory effects of photosynthesis and photomorphogenesis in response to varying light conditions including intensity, quality, and photoperiodicity, and their subsequent impact on plant growth and architecture. Additionally, this review elucidates the role of the circadian system in synchronizing internal rhythms with external light cycles, a process mediated by photoreceptors such as PHYTOCHROME A (PHYA) and PHYTOCHROME B (PHYB), which are pivotal for seasonal growth and dormancy in species like poplar. The molecular perspective is provided on the light-regulated transcription of genes, along with their influence on the plant’s growth cycles and seasonal adaptions. Furthermore, the interactive role of plant hormones, including auxin, ethylene, and abscisic acid (ABA), is explored in the context of light signal transduction and its subsequent effect on plant physiology. By providing a comprehensive view of the light-dependent mechanisms that govern woody plant growth, this review contributes to our understanding of plant adaptation strategies and informs approaches to enhance forestry production and biodiversity conservation in the face of climate change. Full article

The plant architecture of higher plants is regulated through environmental and genetic factors, as well as phytohormones. Phytohormones play a critical role in regulating shoot branching. We determined the branching phenotype of D16 and N99-6, the content of strigolactones, the genetic expression level, and the interaction between auxin and strigolactones. We found that the branching development of the two soybean varieties under shading was significantly slower than that under normal light. The average branch length of N99-6 decreased by 40.9% after shading; however, the branch length of D16 was not significantly affected. Meanwhile, the branch formation rate in D16 was significantly higher than in N99-6. In addition, after shading treatment, the content of strigolactones in D16 and N99-6 axillary buds increased significantly, and the expression of phytochrome genes, PhyA and PhyB, showed opposite changes. However, strigolactone synthesis gene GmMAX4 and signal transduction gene GmMAX2 expression levels of D16 were lower than those of N99-6 after 24 h of shading. In addition, the application of strigolactone inhibitor TIS108 and auxin inhibitor NPA to soybean had no significant effect on the branch phenotype. The expression of the GmMAX2 gene was significantly up-regulated after the external application of the auxin analog, and the expression of auxin transporter gene GmPINI was significantly down-regulated after external application of the strigolactone analog under shade. In this study, we investigated the adverse effect of shade on soybean branching development, which may be due to the interaction of strigolactones with auxins. Full article

UV-B causes both damage to the photosynthetic apparatus (PA) and the activation of specific mechanisms that protect the PA from excess energy and trigger a cascade of regulatory interactions with different photoreceptors, including phytochromes (PHYs) and cryptochromes (CRYs). However, the role of photoreceptors in plants’ responses to UV-B radiation remains undiscovered. This study explores some of these responses using tomato photoreceptor mutants (phya, phyb1, phyab2, cry1). The effects of UV-B exposure (12.3 µmol (photons) m⁻² s⁻¹) on photosynthetic rates and PSII photochemical activity, the contents of photosynthetic and UV-absorbing pigments and anthocyanins, and the nonenzymatic antioxidant capacity (TEAC) were studied. The expression of key light-signaling genes, including UV-B signaling and genes associated with the biosynthesis of chlorophylls, carotenoids, anthocyanins, and flavonoids, was also determined. Under UV-B, phyab2 and cry1 mutants demonstrated a reduction in the PSII effective quantum yield and photosynthetic rate, as well as a reduced value of TEAC. At the same time, UV-B irradiation led to a noticeable decrease in the expression of the ultraviolet-B receptor (UVR8), repressor of UV-B photomorphogenesis 2 (RUP2), cullin 4 (CUL4), anthocyanidin synthase (ANT), phenylalanine ammonia-lease (PAL), and phytochrome B2 (PHYB2) genes in phyab2 and RUP2, CUL4, ANT, PAL, and elongated hypocotyl 5 (HY5) genes in the cry1 mutant. The results indicate the mutual regulation of UVR8, PHYB2, and CRY1 photoreceptors, but not PHYB1 and PHYA, in the process of forming a response to UV-B irradiation in tomato. Full article

Light and photoperiod are environmental signals that regulate flowering transition. In plants like Arabidopsis thaliana, this regulation relies on CONSTANS, a transcription factor that is negatively posttranslational regulated by phytochrome B during the morning, while it is stabilized by PHYA and cryptochromes 1/2 at the end of daylight hours. CO induces the expression of FT, whose protein travels from the leaves to the apical meristem, where it binds to FD to regulate some flowering genes. Although PHYB delays flowering, we show that light and PHYB positively regulate XAANTAL1 and other flowering genes in the shoot apices. Also, the genetic data indicate that XAL1 and FD participate in the same signaling pathway in flowering promotion when plants are grown under a long-day photoperiod at 22 °C. By contrast, XAL1 functions independently of FD or PIF4 to induce flowering at higher temperatures (27 °C), even under long days. Furthermore, XAL1 directly binds to FD, SOC1, LFY, and AP1 promoters. Our findings lead us to propose that light and temperature influence the floral network at the meristem level in a partially independent way of the signaling generated from the leaves. Full article

The main reserve polysaccharide of plants—starch—is undoubtedly important for humans. One of the main sources of starch is the potato tuber, which is able to preserve starch for a long time during the so-called dormancy period. However, accumulated data show that this dormancy is only relative, which raises the question of the possibility of some kind of starch restructuring during dormancy periods. Here, the effect of long-term periods of tuber rest (at 2–4 °C) on main parameters of starches of potato tubers grown in vivo or in vitro were studied. Along with non-transgenic potatoes, Arabidopsis phytochrome B (AtPHYB) transformants were investigated. Distinct changes in starch micro and macro structures—an increase in proportion of amorphous lamellae and of large-sized and irregular-shaped granules, as well as shifts in thickness of the crystalline lamellae—were detected. The degree of such alterations, more pronounced in AtPHYB-transgenic tubers, increased with the longevity of tuber dormancy. By contrast, the polymorphic crystalline structure (B-type) of starch remained unchanged regardless of dormancy duration. Collectively, our data support the hypothesis that potato starch remains metabolically and structurally labile during the entire tuber life including the dormancy period. The revealed starch remodeling may be considered a process of tuber preadaptation to the upcoming sprouting stage. Full article

Phytochrome (phy) system in plants comprising a small number of phytochromes with phyA and phyB as major ones is responsible for acquiring light information in the red—far-red region of the solar spectrum. It provides optimal strategy for plant development under changing light conditions throughout all its life cycle beginning from seed germination and seedling establishment to fruiting and plant senescence. The phyA was shown to participate in the regulation of this cycle which is especially evident at its early stages. It mediates three modes of reactions—the very low and low fluence responses (VLFR and LFR) and the high irradiance responses (HIR). The phyA is the sole light receptor in the far-red spectral region responsible for plant’s survival under a dense plant canopy where light is enriched with the far-red component. Its appearance is believed to be one of the main factors of plants′ successful evolution. So far, it is widely accepted that one molecular phyA species is responsible for its complex functional manifestations. In this review, the evidence of the existence of two distinct phyA types—major, light-labile and soluble phyA′ and minor, relatively light-stable and amphiphilic phyA″—is presented as what may account for the diverse modes of phyA action. Full article