Search Results (24)

The Okinawa Trough (OT) has been a focus of scientific research for many years due to the presence of vibrant hydrothermal and cold seep activity within its narrow basin. However, the spatial distribution and environmental drivers of microbial communities in OT sediments remain poorly understood. The present study aims to address this knowledge gap by investigating microbial diversity and abundance at ten different sampling sites in a transitional zone between hydrothermal vents and cold seeps in the OT. The microbial community at two sampling sites (G08 and G09) in close proximity to hydrothermal vents showed a high degree of similarity. However, lower bacterial and archaeal abundances were found in these sites. The archaeal groups, classified as Hydrothermarchaeota and Thermoplasmata, showed a comparatively higher relative abundance at these sites. In addition, ammonia-oxidizing archaea (AOA), from the family Nitrosopumilaceae, were found to have a higher relative abundance in the OT surface sediments at sampling sites G03, G04, G05, G06, and G07. This result suggests that ammonia oxidation may be actively occurring in these areas. Furthermore, Methylomirabilaceae, which are responsible for methane oxidation coupled with nitrite reduction, dominated three sampling sites (G07, G08, and G09), implying that N-DAMO may play an important role in mitigating methane emissions. Using the FAPROTAX database, we found that predicted prokaryotic microbial functional groups involved in methyl-reducing methanogenesis and hydrogenotrophic methanogenesis were most abundant at sites G08 and G09. At sampling sites G01 and G02, functional groups such as hydrocarbon degradation, methanotrophy, methanol oxidation, denitrification, sulfate respiration, and sulfur oxidation were more abundant. Nitrogen content is the most important environmental factor determining the bacterial and archaeal communities in the OT surface sediments. These results expand our knowledge of the spatial distribution of microbial communities in the transitional zone between hydrothermal vents and cold seeps in the OT. Full article

Large-scale and multi-sample datasets have revealed that microbial diversity and geographic distribution patterns are distinct across various habitats, particularly between hydrothermal vent and cold seep ecosystems. To date, our understanding of the effects of spatial and geochemical gradients on marine microbial communities remains limited. Here, we report the microbial diversity and metabolic versatility of a remote seafloor sediment ecosystem at different sites (GC-2, -4, -5, -6, -8) in the Mid-Okinawa Trough (Mid-OT) using high-throughput metagenomic sequencing technology. Desulfobacteraceae (3.1%) were detected in a high abundance at GC-2 with intense methane concentrations (353 μL/L), which showed a clear correlation with cold seeping. Whereas Candidatus Brocadiaceae (1.7%), Rhodobacteraceae (0.9%), and Rhodospirillaceae (0.7%), which are commonly involved in denitrification and sulfur oxidation, were enriched at GC-8. Concurrently investigating the potential of deep-sea microbial metabolism, we gained insights into the adaptive capabilities and metabolic mechanisms of microorganisms within seafloor environments. Utilizing the Kyoto Encyclopedia of Genes and Genomes (KEGG) database, the analysis of functional modules revealed a significant enrichment (71–74%) of genes associated with metabolic pathways. These results expand our knowledge of the relationship between microbial biodiversity and metabolic versatility in deep-sea extreme environments. Full article

Deep-sea hydrothermal vents have been extensively explored around the globe in the past decades, and the diversity of microbial communities and their ecological functions related to hydrothermal vents have become hotspots in the study of microbial biogeochemistry. However, knowledge of dominant microbial communities and their unique metabolic characteristics adapting to hydrothermal vents is still limited. In our study, the sediment sample near the Tangyin hydrothermal vent in the southern part of the Okinawa Trough was collected, and the most abundant phyla are Proteobacteria and Desulfobacterota based on the 16S rRNA genes and metagenome sequencing. Metagenomic analysis revealed that methane metabolism, sulfur reduction, and Fe²⁺ uptake were abundantly distributed in hydrothermal sediment. In addition, most of the metagenomic assembly genomes (MAGs), belonging to Chloroflexota, Desulfobacterota, and Gammaproteobacteria, were found to be involved in methanogenesis, sulfur oxidation/reduction, and ferrous/ferric iron metabolisms. Among these MAGs, the two representative groups (Bathyarchaeia and Thioglobaceae) also showed distinct metabolic characteristics related to carbon, sulfur, and iron to adapt to hydrothermal environments. Our results reveal the dominant microbial populations and their metabolic features in the sediment near the Tangyin hydrothermal fields, providing a better understanding of microbial survival strategies in the extreme environment. Full article

The experimental study of water–rock reactions under high-temperature and -pressure conditions is a useful approach to constrain controlling factors of the fluid composition in a natural hydrothermal system. Previous studies have focused mainly on the mid-ocean ridge fields, and the hydrothermal alteration of intermediate-to-felsic rocks has been less emphasized despite its potential importance in the fluid chemistry in an arc/back-arc basin setting. We examined the alteration processes of fresh rhyolite and andesite rocks collected from the middle and southern Okinawa Trough, respectively, at 325 °C and 300 bar (the estimated condition at the reaction zone in the fields), especially focusing on the behavior of silica between the solid and liquid phases. The experimental fluids are characterized by the high Si concentration up to 30 mM, indicating the substantial dissolution of volcanic glass in the analyzed rocks. The high Si concentration in the fluids was presumably buffered by amorphous silica, precipitated from the fluids as a precursor of hydrothermal quartz, during the experiments. Our results emphasize a previously overlooked role of volcanic glass/amorphous silica in the fluid composition in the Okinawa Trough and are consistent with the previous model of pumice replacement mineralization for the SMS deposit formation in the trough. Full article

The snail P. glabra is an endemic species in deep-sea chemosynthetic ecosystems of the Northwest Pacific Ocean. To obtain more genetic information on this species and provide the basis for subsequent whole-genome map construction, a genome survey was performed on this snail from the hydrothermal vent of Okinawa Trough. The genomic size of P. glabra was estimated to be 1.44 Gb, with a heterozygosity of 1.91% and a repeated sequence content of 69.80%. Based on the sequencing data, a draft genome of 1.32 Gb was assembled. Transposal elements (TEs) accounted for 40.17% of the entire genome, with DNA transposons taking the highest proportion. It was found that most TEs were inserted in the genome recently. In the simple sequence repeats, the dinucleotide motif was the most enriched microsatellite type, accounting for 53% of microsatellites. A complete mitochondrial genome of P. glabra with a total length of 16,268 bp was assembled from the sequencing data. After comparison with the published mitochondrial genome of Provanna sp. from a methane seep, 331 potential single nucleotide polymorphism (SNP) sites were identified in protein-coding genes (PCGs). Except for the cox1 gene, nad2, nad4, nad5, and cob genes are expected to be candidate markers for population genetic and phylogenetic studies of P. glabra and other deep-sea snails. Compared with shallow-water species, three mitochondrial genes of deep-sea gastropods exhibited a higher evolutionary rate, indicating strong selection operating on mitochondria of deep-sea species. This study provides insights into the genome characteristics of P. glabra and supplies genomic resources for further studies on the adaptive evolution of the snail in extreme deep-sea chemosynthetic environments. Full article

In this study, mineralogical and elemental geochemical characteristics of massive sulfide samples collected from the Jade hydrothermal field, located in the Izena depression in the central graben of the Okinawa Trough, were analyzed by means of optical microscopy, scanning electron microscopy, and electron probe microanalysis (EPMA). The results show that the mineralization in the Jade hydrothermal field can be divided into Zn-Cu-Pb-rich massive sulfides and Zn-Fe-rich massive sulfides. The former is composed of sphalerite, galena, chalcopyrite, pyrite, and anglesite, which is the product of the low-temperature alteration of galena. The latter is mainly composed of sphalerite, pyrite, marcasite, and traces of galena. Cu and Zn in pyrite may exist in the form of microinclusions, while Ag and Pb may exist in pyrite in the form of fine galena inclusions containing Ag. Fe and Cu may enter sphalerite in the form of ion replacement. Zn may enter chalcopyrite in the form of ion replacement. Consistent with the previous understanding, the metal elements in the hydrothermal liquid system in the Jade hydrothermal field mostly migrated as sulfur complexes, and when the hydrothermal fluid mixes with seawater, the physical and chemical conditions of the fluid change, resulting in sulfide mineral precipitation. However, the chemical structure of chalcopyrite is still controversial, which restricts the understanding of the substitution mechanism of trace elements during chalcopyrite precipitation. Full article

Orienting vertically with the head facing upward allows fish to look for the shadow of their prey against ambient light, while also making their own shadow smaller to predators beneath them. Here, we describe the in situ behavior of three midwater fish in the family Neoscopelidae, Neoscopelus macrolepidotus, Neoscopelus microchir, and Scopelengys tristis, all of which were observed facing vertically with the head downward. This behavior allows the fish to diminish its shadow to hide from predators while hunting prey below. Assessing unique behaviors helps us better understand the role of these and other poorly studied deep-sea fishes. Full article

Two strains, 81s02^T and 334s03^T, were isolated from the sediment core near the hydrothermal field of southern Okinawa Trough. The cells of both strains were observed to be rod-shaped, non-gliding, Gram-staining negative, yellow-pigmented, facultatively anaerobic, catalase and oxidase positive, and showing optimum growth at 30 °C and pH 7.5. The strains 81s02^T and 334s03^T were able to tolerate up to 10% and 9% (w/v) NaCl concentration, respectively. Based on phylogenomic analysis, the average nucleotide identity (ANI) and the digital DNA-DNA hybridization (dDDH) values between the two strains and the nearest phylogenetic neighbors of the genus Muricauda were in range of 78.0–86.3% and 21.5–33.9%, respectively. The strains 81s02^T and 334s03^T shared 98.1% 16S rRNA gene sequence similarity to each other but were identified as two distinct species based on 81.4–81.5% ANIb, 85.5–85.6% ANIm and 25.4% dDDH values calculated using whole genome sequences. The strains 81s02^T and 334s03^T shared the highest 16S rRNA gene sequence similarity to M. lutimaris SMK-108^T (98.7%) and M. aurea BC31-1-A7^T (98.8%), respectively. The major fatty acid of strains 81s02^T and 334s03^T were identified similarly as iso-C_15:0, iso-C_17:0 3-OH and iso-C_15:1 G, and the major polar lipids of the both strains consisted of phosphatidylethanolamine and two unidentified lipids. The strains contained MK-6 as their predominant menaquinone. The genomic G+C contents of strains 81s02^T and 334s03^T were determined to be 41.6 and 41.9 mol%, respectively. Based on the phylogenetic and phenotypic characteristics, both strains are considered to represent two novel species of the genus Muricauda, and the names Muricauda okinawensis sp. nov. and Muricauda yonaguniensis sp. nov. are proposed for strains 81s02^T (=KCTC 92889^T = MCCC 1K08502^T) and 334s03^T (=KCTC 92890^T = MCCC 1K08503^T). Full article

Quorum sensing (QS) is a chemical communication system by which bacteria coordinate gene expression and social behaviors. Quorum quenching (QQ) refers to processes of inhibiting the QS pathway. Deep-sea hydrothermal vents are extreme marine environments, where abundant and diverse microbial communities live. However, the nature of chemical communication in bacteria inhabiting the hydrothermal vent is poorly understood. In this study, the QS and QQ activities with N-acyl homoserine lactones (AHLs) as the autoinducer were detected in bacteria isolated from hydrothermal vents in the Okinawa Trough. A total of 18 and 108 isolates possessed AHL-producing and AHL-degrading abilities, respectively. Bacteria mainly affiliated with Rhodobacterales, Hyphomicrobiales, Enterobacterales and Sphingomonadales showed QS activities; QQ was mainly associated with Bacillales, Rhodospirillales and Sphingomonadales. The results showed that the bacterial QS and QQ processes are prevalent in hydrothermal environments in the Okinawa Trough. Furthermore, QS significantly affected the activities of extracellular enzymes represented by β-glucosidase, aminopeptidase and phosphatase in the four isolates with higher QS activities. Our results increase the current knowledge of the diversity of QS and QQ bacteria in extreme marine environments and shed light on the interspecific relationships to better investigate their dynamics and ecological roles in biogeochemical cycling. Full article

The Yonaguni Knoll IV is an active seafloor hydrothermal system associated with submarine silicic volcanism located in the “cross back-arc volcanic trail” (CBVT) in the southwestern Okinawa Trough. However, the behavior of volatiles during magmatic differentiation in the shallow silicic magma chamber is unclear. Here, the volatile contents of apatite inclusions trapped in different phenocrysts (orthopyroxene and amphibole) and microphenocrysts in the rhyolite from the Yonaguni Knoll IV hydrothermal field were analyzed by using electron microprobe analysis, which aims to track the behavior of volatiles in the shallow magma chamber. Notably, the ‘texturally constrained’ apatites showed a decreasing trend of X_Cl/X_OH and X_F/X_Cl ratios. Based on the geochemical analyses in combination with thermodynamic modeling, we found that the studied apatites were consistent with the mode of volatile-undersaturated crystallization. Therefore, volatiles were not saturated in the early stage of magmatic differentiation in the shallow rhyolitic magma chamber, and consequently, the metal elements were retained in the rhyolitic melt and partitioned into crystalline magmatic sulfides. Additionally, previous studies suggested that the shallow rhyolitic magma chamber was long-lived and periodically replenished by mafic magma. The injection of volatile-rich and oxidized subduction-related mafic magmas can supply abundant volatiles and dissolve magmatic sulfide in the shallow magma chamber. These processes are important for the later-stage of volatile exsolution, while the forming metal-rich magmatic fluids contribute to the overlying Yonaguni Knoll IV hydrothermal system. Full article

Submarine volcanic eruptions can be destructive for marine environments and resources. Magma mixing is considered to be an important trigger for volcanic eruptions. Determining the magma residence time from mixing to eruption is conducive to assessing the stability of magmatic systems, especially beneath the seafloor where in situ volcano monitoring is inaccessible. Here, we estimated the timescale of magma mixing beneath the Iheya Ridge, Okinawa Trough, which is characterized by pervasive magma mixing. We focused on andesitic and rhyolitic magma generated by basalt–rhyolite mixing and rhyolite–rhyolite mixing, respectively. By taking advantage of the Mg diffusion chronometry, we showed that the andesitic magma resided in the magma chamber for very short time (~0.1–0.3 years), whereas the residence time of the rhyolitic magma was much longer (~80–120 years). The different times might be in part related to the different rheology of the mixed magmas. The short residence time of the andesitic magma suggested efficient magma mixing that allowed the andesites to be erupted, which may explain the appearance of scarce andesites in basalt–rhyolite dominant settings. However, the rapid mixing and eruption of magma is a disadvantage for the development and preservation of seafloor hydrothermal resources. Therefore, we suggest that the stability of sub-seafloor magma systems must be evaluated during the assessment of seafloor sulfide resources and mining prospects. Full article

Based on the newly compiled and mostly complete unified earthquake catalogue for China’s seas and adjacent areas, further information was obtained about the structural shape and dip angle of the Benioff zone in the Ryukyu Islands subduction zone during the different subduction stages. In addition, using the damped regional stress tensor inversion method, we were able to investigate the complex stress field characteristics and the dynamic significance of the shallow and intermediate earthquakes in the Ryukyu Islands subduction zone. The results show that the tectonic stress field of the Ryukyu Islands subduction zone was extensional along the subduction direction in the northern area of the Tokara Strait and was compressional along the subduction direction in the southern area of the Tokara Strait. The R value of the shallow stress field of the Okinawa Trough was low, and the σ₃ was stable in the NNW direction with a small dip angle (>30°). The type of stress field in the shallow part of the Okinawa Trough transitioned from strike-slip type to normal fault type from north to south, reflecting the difference in the degree of development of the trough, and the southern segment of the trough began to transform into the expansion stage. The northeastern portion of the study area and southeast Taiwan constituted the high R value (0.68–0.87) region where the σ₂ had tensile components. The stress state was biaxial tension–uniaxial compression, and the principal compressive stress was determined to be in the SEE direction with a large dip angle (>30°). The σ₁ in northeast Taiwan exhibited a nearly vertical (>60°) plunge, while the σ₂ and σ₃ were nearly horizontal. The σ₂ was thrust in the ENE–WSW direction, and the σ₃ was extended in the NNW direction. Through this research, a greater understanding has been gained of the seismicity characteristics and shape of the Ryukyu Islands subduction zone. Supplementary research has also been completed on the focal mechanism solution and stress field of the Ryukyu Islands subduction zone. Finally, this research is important for earthquake hazard analysis and earthquake engineering safety evaluation in this area. Full article

Studies of the element contents and isotopic characteristics of sulfide minerals from seafloor hydrothermal sulfide deposits are a significant method of investigating seawater-fluid mixing and fluid-rock and/or sediment interactions in hydrothermal systems. The seafloor hydrothermal sulfide ores from the Noho hydrothermal field (NHF) in the Okinawa Trough (OT) consist of pyrrhotite, isocubanite, sphalerite, galena, and amorphous silica. The Rh, Ag, Sb, and Tl contents mostly increase in galena as the fluid temperature decreases in the late ore-forming stage. In the sulfide minerals, the rare earth elements are mainly derived from the hydrothermal fluids, while the volcanic rocks and/or sediments are the sources of the sulfur and lead in the sulfide minerals. After the precipitation of galena, the redox state becomes oxidizing, and the pH value of the fluid increases, which is accompanied by the formation of amorphous silica. Finally, neither pyrite nor marcasite has been observed in association with pyrrhotite in the NHF sulfides, likely indicating that the amount of sulfur was limited in this hydrothermal system, and most of the residual Fe was incorporated into the sphalerite. This suggests that the later pyrite and/or marcasite precipitation in the seafloor hydrothermal sulfide deposit is controlled by the sulfur content of the fluid. Furthermore, it is possible to use hydrothermal sulfides and their inclusions to trace subseafloor fluid circulation processes. Full article

The provenance of sediments in the Southern Okinawa Trough since the late Holocene has been a controversial scientific issue during the past 20 years. Previous studies based on isotope proxies generally indicated Taiwanese rivers as the primary source in the Southern Okinawa Trough since the late Holocene. Based on the zircon U-Pb geochronology, this study identified how sediments from the Yangtze River/East China Sea shelf had contributed significantly to the Southern Okinawa Trough in the past 624 a BP. Notably, this study found two Paleoarchean zircon grains, which indicated they originated from older orogenic belts. These data shed new light on the provenance of sediments, and a partial supply from the mainland of China cannot be excluded. Full article

Viruses are far more abundant than cellular microorganisms in the marine ecosystem. However, very few viruses have so far been isolated from marine sediments, especially hydrothermal vent sediments, hindering the understanding of the biology and ecological functions of these tiny organisms. Here, we report the isolation and characterization of a temperate bacteriophage, named PVJ1, which infects Psychrobacillus from a hydrothermal vent field in Okinawa Trough. PVJ1 belongs to the Myoviridae family of the order Caudovirales. The tailed phage possesses a 53,187 bp linear dsDNA genome, with 84 ORFs encoding structural proteins, genome replication, host lysis, etc. in a modular pattern. The phage genome is integrated into the host chromosome near the 3′-end of deoD, a gene encoding purine nucleoside phosphorylase (PNP). The phage integration does not appear to disrupt the function of PNP. The phage DNA is packaged by the headful mechanism. Release of PVJ1 from the host cell was drastically enhanced by treatment with mitomycin C. Phages encoding an MCP sharing significant similarity (≥70% identical amino acids) with that of PVJ1 are widespread in diverse environments, including marine and freshwater sediments, soils, artificial ecosystems, and animal intestines, and primarily infect Firmicutes. These results are valuable to the understanding of the lifestyle and host interactions of bacterial viruses at the bottom of the ocean. Full article