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Keywords = Genetically Modified Organisms (GMOs)

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22 pages, 397 KiB  
Article
Echo Chambers and Homophily in the Diffusion of Risk Information on Social Media: The Case of Genetically Modified Organisms (GMOs)
by Xiaoxiao Cheng and Jianbin Jin
Entropy 2025, 27(7), 699; https://doi.org/10.3390/e27070699 - 29 Jun 2025
Viewed by 569
Abstract
This study investigates the mechanisms underlying the diffusion of risk information about genetically modified organisms (GMOs) on the Chinese social media platform Weibo. Drawing upon social contagion theory, we examine how endogenous and exogenous mechanisms shape users’ information-sharing behaviors. An analysis of 388,722 [...] Read more.
This study investigates the mechanisms underlying the diffusion of risk information about genetically modified organisms (GMOs) on the Chinese social media platform Weibo. Drawing upon social contagion theory, we examine how endogenous and exogenous mechanisms shape users’ information-sharing behaviors. An analysis of 388,722 reposts from 2444 original GMO risk-related texts enabled the construction of a comprehensive sharing network, with computational text-mining techniques employed to detect users’ attitudes toward GMOs. To bridge the gap between descriptive and inferential network analysis, we employ a Shannon entropy-based approach to quantify the uncertainty and concentration of attitudinal differences and similarities among sharing and non-sharing dyads, providing an information-theoretic foundation for understanding positional and differential homophily. The entropy-based analysis reveals that information-sharing ties are characterized by lower entropy in attitude differences, indicating greater attitudinal alignment among sharing users, especially among GMO opponents. Building on these findings, the Exponential Random Graph Model (ERGM) further demonstrates that both endogenous network mechanisms (reciprocity, preferential attachment, and triadic closure) and positional homophily influence GMO risk information sharing and dissemination. A key finding is the presence of a differential homophily effect, where GMO opponents exhibit stronger homophilic tendencies than non-opponents. Despite the prevalence of homophily, this paper uncovers substantial cross-attitude interactions, challenging simplistic notions of echo chambers in GMO risk communication. By integrating entropy and ERGM analyses, this study advances a more nuanced, information-theoretic understanding of how digital platforms mediate public perceptions and debates surrounding controversial socio-scientific issues, offering valuable implications for developing effective risk communication strategies in increasingly polarized online spaces. Full article
(This article belongs to the Special Issue Complexity of Social Networks)
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23 pages, 4937 KiB  
Article
Suitability of Real-Time PCR Methods for New Genomic Technique Detection in the Context of the European Regulations: A Case Study in Arabidopsis
by Caroline Bedin Zanatta, Frank Narendja, Hilana El Jawhary, Gretta Abou-Sleymane, Saminathan Subburaj, Rubens Onofre Nodari and Sarah Zanon Agapito-Tenfen
Int. J. Mol. Sci. 2025, 26(7), 3308; https://doi.org/10.3390/ijms26073308 - 2 Apr 2025
Viewed by 890
Abstract
PCR methods are widely applied for the detection of genetically modified organisms (GMOs) in Europe, facilitating compliance with stringent regulatory requirements and enabling the accurate identification and quantification of genetically modified traits in various crops and foodstuffs. This manuscript investigates the suitability of [...] Read more.
PCR methods are widely applied for the detection of genetically modified organisms (GMOs) in Europe, facilitating compliance with stringent regulatory requirements and enabling the accurate identification and quantification of genetically modified traits in various crops and foodstuffs. This manuscript investigates the suitability of real-time PCR methods for detecting organisms generated through new genomic techniques (NGTs), specifically focusing on a case study using Arabidopsis thaliana as a model gene-edited plant. Given the complexities of European regulations regarding genetically modified organisms (GMOs) and the classification of gene-edited plants, there is a pressing need for robust detection methods. Our study highlights the development and validation of a novel single-plex real-time PCR method targeting a specific single nucleotide polymorphism (SNP) in the grf1-3 gene modified using CRISPR-Cas9 technology. We emphasize the effectiveness of locked nucleic acid (LNA)-modified primers in improving specificity. The results demonstrate that while the grf1-3 LNA method successfully detected and quantified gene-edited Arabidopsis DNA, achieving absolute specificity remains a challenge. This study also addresses the significance of the cross-laboratory method for validation, demonstrating that the method developed for an SNP-modified allele can be performed in accordance with the precision and trueness criteria established by the European Network of GMO Laboratories (ENGL). Furthermore, we call for continued collaboration among regulatory agencies, academia, and industry stakeholders to refine detection strategies. This proactive approach is essential not only for regulatory compliance but also for maintaining public trust in the safe integration of gene-edited organisms into food products. Full article
(This article belongs to the Special Issue Latest Research on Plant Genomics and Genome Editing, 2nd Edition)
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22 pages, 1779 KiB  
Article
Characterization of Extruded Sorghum-Soy Blends to Develop Pre-Cooked and Nutritionally Dense Fortified Blended Foods
by Michael Joseph, Qingbin Guo, Brian Lindshield, Akinbode A. Adedeji and Sajid Alavi
Foods 2025, 14(5), 779; https://doi.org/10.3390/foods14050779 - 25 Feb 2025
Cited by 1 | Viewed by 979
Abstract
Food aid commodities are essential food items in global food aid programming. Some are primarily made from an extrusion of corn and soybeans. However, there are concerns about the genetically modified organisms (GMOs) of some of these grains. Hence, there is a need [...] Read more.
Food aid commodities are essential food items in global food aid programming. Some are primarily made from an extrusion of corn and soybeans. However, there are concerns about the genetically modified organisms (GMOs) of some of these grains. Hence, there is a need for alternatives to grains, like sorghum, which is not GMO. It is critical to ensure that products from this new ingredient meet the quality requirements, hence the need to profile them. An expanded formulation sorghum-soy blend (SSB), obtained from extrusion cooking, was ground using a hammer mill and analyzed for changes in properties that were affected by the transformation of starch and protein during processing. Macro- and micro-nutrients were added to these milled blends to prepare fortified blended foods (FBFs) that could meet the recommendations of Food Aid Quality Review (FAQR) report on energy, protein, and micronutrient content. The water absorption index (WAI) ranged from 2.82 to 5.90 g/g, the water solubility index (WSI) ranged from 6.22 to 18.50%, and the blends were affected by the formulation—whole/decorticated sorghum and different levels of fat. Extrusion processing caused starch gelatinization in the range of 90.69–96.26%. The pasting properties indicated that whole grain blends of SSB had lower peak time and higher final viscosity when compared to decorticated sorghum blends. The Bostwick flow rate of cooked porridges with 20% solids was within the recommended range of 9–21 cm/min. Starch digestibility significantly increased after extrusion, with a 149.65% increase in rapidly digestible starch (RDS). The protein digestibility did not vary significantly when subjected to extrusion and wet cooking. There was a significant reduction in anti-nutritional factors in the extruded binary blends of SSB when compared to respective raw blends: phytic acid was reduced by 25.33%, tannins were not found, and trypsin inhibitors were reduced by 19.50%. Thus, the extrusion processing of SSB with the subsequent addition of macro- and micro-ingredients was effective in producing FBFs with high nutritive value, comparable to FBF made from traditional ingredients. Full article
(This article belongs to the Special Issue Impacts of Innovative Processing Technologies on Food Quality)
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13 pages, 2150 KiB  
Article
Effect of a Mating Type Gene Editing in Lentinula edodes Using RNP/Nanoparticle Complex
by Minseek Kim, Minji Oh, Ji-Hoon Im, Eun-Ji Lee, Hojin Ryu, Hyeon-Su Ro and Youn-Lee Oh
J. Fungi 2024, 10(12), 866; https://doi.org/10.3390/jof10120866 - 13 Dec 2024
Viewed by 1226
Abstract
Gene editing using CRISPR/Cas9 is an innovative tool for developing new mushroom strains, offering a promising alternative to traditional breeding methods that are time-consuming and labor-intensive. However, plasmid-based gene editing presents several challenges, including the need for selecting appropriate promoters for Cas9 expression, [...] Read more.
Gene editing using CRISPR/Cas9 is an innovative tool for developing new mushroom strains, offering a promising alternative to traditional breeding methods that are time-consuming and labor-intensive. However, plasmid-based gene editing presents several challenges, including the need for selecting appropriate promoters for Cas9 expression, optimizing codons for the Cas9 gene, the unintended insertion of fragmented plasmid DNA into genomic DNA (gDNA), and regulatory concerns related to genetically modified organisms (GMOs). To address these issues, we utilized a Ribonucleoprotein (RNP) complex consisting of Cas9 and gRNA for gene editing to modify the A mating-type gene of Lentinula edodes. To overcome the challenges posed by the large size of the Cas9 protein, which limits its penetration through the protoplast membrane, and the susceptibility of sgRNA to degradation, we developed a nanoparticle complex using calcium phosphate and polyacrylic acid. This approach significantly improved gene editing efficiency. Consequently, we successfully edited the mating-controlling genes hd1 and hd2 in L. edodes and examined the effects of their disruption on mating. Disruption of the hd1 gene, which is known to influence mycelial growth, did not significantly affect growth or mating. In contrast, editing the hd2 gene disrupted mating with compatible partners, highlighting its critical role in the mating process. The RNP-based transformation technology presented here offers significant advancement over traditional plasmid-based methods, enhancing the efficiency of targeted gene modification while avoiding the insertion of foreign genetic material, thereby mitigating GMO-related regulatory concerns. Full article
(This article belongs to the Section Fungal Genomics, Genetics and Molecular Biology)
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18 pages, 684 KiB  
Article
In-House Validation of Four Duplex Droplet Digital PCR Assays to Quantify GM Soybean Events
by Daniela Verginelli, Sara Ciuffa, Katia Spinella, Davide La Rocca, Marisa Misto, Cinzia Quarchioni, Pamela Bonini, Cristiana Fusco, Lorella Peroni, Stefania Peddis and Ugo Marchesi
Foods 2024, 13(24), 4011; https://doi.org/10.3390/foods13244011 - 11 Dec 2024
Cited by 1 | Viewed by 1319
Abstract
Due to the increasing number of authorized events in the European Union, it is crucial for the official laboratories to enforce market control to detect and quantify genetically modified organisms. In this study, an in-house validation of quantitative duplex ddPCR methods was performed [...] Read more.
Due to the increasing number of authorized events in the European Union, it is crucial for the official laboratories to enforce market control to detect and quantify genetically modified organisms. In this study, an in-house validation of quantitative duplex ddPCR methods was performed involving MON87701, MON87769, MON89788 and CV-127-9 assays with respect to the lectin reference gene. Since the ddPCR methods provide accurate quantification, show less sensitivity to PCR inhibitors and are more suitable for multiplexing compared to the real-time PCR, the optimization of the existing assays was performed with the exception of MON87701, according to the JRC Guidance documents and technical reports. However, some concerns related to practical settings for the quantitative multiplex of ddPCR methods and their validation were encountered; therefore, a general workflow to develop and validate a ddPCR-based method is shown. The obtained data and the validation performance parameters such as specificity, cross-talk, robustness, dynamic range, linearity, the limit of quantification, trueness and precision comply with international recommendations for GMO quantification methods. The duplex ddPCR methods here investigated are equivalent in terms of performance compared to the singleplex real-time PCR methods, showing higher flexibility and cost effectiveness. Full article
(This article belongs to the Section Food Quality and Safety)
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22 pages, 4106 KiB  
Article
Solarplast® Demonstrates Anti-Inflammatory and Anti-Oxidant Activity In Vivo and Positively Modulates Perceived Anti-Ageing Quality of Life Questionnaire and Skin Analogue Scale
by Kieran Rea, Antonio M. Inarejos-Garcia, Sonia Guilera Bermell, Reme Garcia Bou, Yinka Olusoga and John Deaton
Int. J. Mol. Sci. 2024, 25(23), 12689; https://doi.org/10.3390/ijms252312689 - 26 Nov 2024
Viewed by 1058
Abstract
Solarplast® is an organic, non-GMO (genetically modified organism) dietary supplement from an enzymatically treated spinach preparation containing numerous active components that exhibit antioxidative and anti-inflammatory properties. The purpose of this study was to evaluate the effects of a 45-day supplementation period in [...] Read more.
Solarplast® is an organic, non-GMO (genetically modified organism) dietary supplement from an enzymatically treated spinach preparation containing numerous active components that exhibit antioxidative and anti-inflammatory properties. The purpose of this study was to evaluate the effects of a 45-day supplementation period in adult men and women (Total n = 84), some of whom were classified as “everyday smokers”. The main outcomes include metabolic readouts, oxidative stress, inflammation, and secondary subjective assessments, including skin, physical, and mental health questionnaires. Solarplast® attenuated some markers associated with smoking-induced increases in inflammatory tone and oxidative stress markers. Furthermore, Solarplast® administration improved anti-ageing quality of life mental scores associated with depression-related symptoms, loss of self-confidence, and some anxiety-related symptoms and exhibited positive effects in some readouts of anti-ageing quality of life physical scores and skin visual analogue scores. In summary, Solarplast® is safe, well-tolerated, may reduce circulating inflammatory and oxidative stress markers, and may positively impact some mental and physical quality-of-life parameters as well as skin quality. Full article
(This article belongs to the Special Issue New Perspective on Inflammatory Diseases: Role of Natural Compounds)
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16 pages, 3203 KiB  
Review
Advances in Genotyping Detection of Fragmented Nucleic Acids
by Qian Liu, Yun Chen and Hao Qi
Biosensors 2024, 14(10), 465; https://doi.org/10.3390/bios14100465 - 28 Sep 2024
Viewed by 1723
Abstract
Single nucleotide variant (SNV) detection is pivotal in various fields, including disease diagnosis, viral screening, genetically modified organism (GMO) identification, and genotyping. However, detecting SNVs presents significant challenges due to the fragmentation of nucleic acids caused by cellular apoptosis, molecular shearing, and physical [...] Read more.
Single nucleotide variant (SNV) detection is pivotal in various fields, including disease diagnosis, viral screening, genetically modified organism (GMO) identification, and genotyping. However, detecting SNVs presents significant challenges due to the fragmentation of nucleic acids caused by cellular apoptosis, molecular shearing, and physical degradation processes such as heating. Fragmented nucleic acids often exhibit variable lengths and inconsistent breakpoints, complicating the accurate detection of SNVs. This article delves into the underlying causes of nucleic acid fragmentation and synthesizes the strengths and limitations of next-generation sequencing technology, high-resolution melting curves, molecular probes, and CRISPR-based approaches for SNV detection in fragmented nucleic acids. By providing a detailed comparative analysis, it seeks to offer valuable insights for researchers working to overcome the challenges of SNV detection in fragmented samples, ultimately advancing the accurate and efficient detection of single nucleotide variants across diverse applications. Full article
(This article belongs to the Special Issue Design and Application of Novel Nucleic Acid Probe)
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21 pages, 1436 KiB  
Review
Genome-Editing Products Line up for the Market: Will Europe Harvest the Benefits from Science and Innovation?
by Alexios Polidoros, Irini Nianiou-Obeidat, Nikolaos Tsakirpaloglou, Nestor Petrou, Eleftheria Deligiannidou and Nefeli-Maria Makri
Genes 2024, 15(8), 1014; https://doi.org/10.3390/genes15081014 - 1 Aug 2024
Cited by 2 | Viewed by 4833
Abstract
Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) technologies have revolutionized genome editing, significantly advancing the improvement of cultivated crop species. This review provides an overview of genome-edited crops that have either reached the market or received the necessary approvals but are not yet [...] Read more.
Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) technologies have revolutionized genome editing, significantly advancing the improvement of cultivated crop species. This review provides an overview of genome-edited crops that have either reached the market or received the necessary approvals but are not yet available to consumers. We analyze various genome-editing studies to understand the distribution of different genome-editing systems, the types of site-directed nucleases employed, and the geographical spread of these studies, with a specific focus on global and European contexts. Additionally, we examine the target crops involved. The review also outlines the multiple steps required for the legal acceptance of genome-edited crops within European jurisdictions. We conclude with suggestions for the future prospects of genome-editing research in Europe, aiming to streamline the approval process and enhance the development and adoption of genome-edited crops. Full article
(This article belongs to the Collection Feature Papers: 'Plant Genetics and Genomics' Section)
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24 pages, 978 KiB  
Review
Challenges for the Post-Market Environmental Monitoring in the European Union Imposed by Novel Applications of Genetically Modified and Genome-Edited Organisms
by Marion Dolezel, Andreas Lang, Anita Greiter, Marianne Miklau, Michael Eckerstorfer, Andreas Heissenberger, Eva Willée and Wiebke Züghart
BioTech 2024, 13(2), 14; https://doi.org/10.3390/biotech13020014 - 15 May 2024
Cited by 4 | Viewed by 3841
Abstract
Information on the state of the environment is important to achieve the objectives of the European Green Deal, including the EU’s Biodiversity Strategy for 2030. The existing regulatory provisions for genetically modified organisms (GMOs) foresee an obligatory post-market environmental monitoring (PMEM) of potential [...] Read more.
Information on the state of the environment is important to achieve the objectives of the European Green Deal, including the EU’s Biodiversity Strategy for 2030. The existing regulatory provisions for genetically modified organisms (GMOs) foresee an obligatory post-market environmental monitoring (PMEM) of potential adverse effects upon release into the environment. So far, GMO monitoring activities have focused on genetically modified crops. With the advent of new genomic techniques (NGT), novel GMO applications are being developed and may be released into a range of different, non-agricultural environments with potential implications for ecosystems and biodiversity. This challenges the current monitoring concepts and requires adaptation of existing monitoring programs to meet monitoring requirements. While the incorporation of existing biodiversity monitoring programs into GMO monitoring at the national level is important, additional monitoring activities will also be required. Using case examples, we highlight that monitoring requirements for novel GMO applications differ from those of GM crop plants previously authorized for commercial use in the European Union. Full article
(This article belongs to the Section Environmental Biotechnology)
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2 pages, 131 KiB  
Abstract
How Will Chemistry Help Solve World Hunger?
by Miroslav M. Vrvic, Srdjan Miletic and Nikoleta Lugonja
Proceedings 2023, 91(1), 235; https://doi.org/10.3390/proceedings2023091235 - 4 Feb 2024
Cited by 1 | Viewed by 2868
Abstract
World hunger remains a pressing global issue that demands innovative solutions to ensure food security and alleviate widespread malnutrition. In this context, the role of chemistry in addressing the complex challenges of food production, preservation, and distribution is crucial. Chemistry has the potential [...] Read more.
World hunger remains a pressing global issue that demands innovative solutions to ensure food security and alleviate widespread malnutrition. In this context, the role of chemistry in addressing the complex challenges of food production, preservation, and distribution is crucial. Chemistry has the potential to play a significant role in addressing the global issue of world hunger. Through the development of innovative agricultural practices, food preservation technologies, and novel food sources, chemistry can help increase the global food supply and ensure that all people have access to nutritious and affordable food. This paper explores the various ways in which chemistry is being used to tackle world hunger, from the production of drought-resistant crops to the development of sustainable farming methods. The paper also discusses the challenges that must be overcome to fully leverage the potential of chemistry in addressing world hunger, including the need for investment in research and development, as well as greater collaboration between scientists, policymakers, and other stakeholders. Ultimately, this paper argues that chemistry can be a powerful tool in the fight against world hunger and that continued investment in this field has the potential to make a significant impact on global food security. Chemistry plays a fundamental role in improving agricultural practices and increasing crop yields. Through the development of fertilizers, pesticides, and herbicides, chemists can optimize plant growth, enhance soil fertility, and combat pests and diseases that threaten agricultural productivity. Moreover, advancements in genetic engineering and biotechnology allow scientists to create genetically modified organisms (GMOs) as potential food. In conclusion, chemistry holds immense potential in addressing the challenges of world hunger. By leveraging its principles and technologies, including agricultural innovations, food preservation techniques, fortification strategies, and sustainable practices, chemistry can contribute to increasing food production, improving nutrition, and ensuring food security for vulnerable populations. However, it is crucial to prioritize ethical considerations, sustainability, and equitable access to these advancements to ensure a comprehensive and inclusive approach to solving world hunger. Full article
(This article belongs to the Proceedings of The 14th European Nutrition Conference FENS 2023)
23 pages, 1429 KiB  
Article
Strategies for Traceability to Prevent Unauthorised GMOs (Including NGTs) in the EU: State of the Art and Possible Alternative Approaches
by Jenny Teufel, Viviana López Hernández, Anita Greiter, Nele Kampffmeyer, Inga Hilbert, Michael Eckerstorfer, Frank Narendja, Andreas Heissenberger and Samson Simon
Foods 2024, 13(3), 369; https://doi.org/10.3390/foods13030369 - 23 Jan 2024
Cited by 7 | Viewed by 3418
Abstract
The EU’s regulatory framework for genetically modified organisms (GMOs) was developed for “classical” transgenic GMOs, yet advancements in so-called “new genomic techniques (NGTs)” have led to implementation challenges regarding detection and identification. As traceability can complement detection and identification strategies, improvements to the [...] Read more.
The EU’s regulatory framework for genetically modified organisms (GMOs) was developed for “classical” transgenic GMOs, yet advancements in so-called “new genomic techniques (NGTs)” have led to implementation challenges regarding detection and identification. As traceability can complement detection and identification strategies, improvements to the existing traceability strategy for GMOs are investigated in this study. Our results are based on a comprehensive analysis of existing traceability systems for globally traded agricultural products, with a focus on soy. Alternative traceability strategies in other sectors were also analysed. One focus was on traceability strategies for products with characteristics for which there are no analytical verification methods. Examples include imports of “conflict minerals” into the EU. The so-called EU Conflict Minerals Regulation requires importers of certain raw materials to carry out due diligence in the supply chain. Due diligence regulations, such as the EU’s Conflict Minerals Regulation, can legally oblige companies to take responsibility for certain risks in their supply chains. They can also require the importer to prove the regional origin of imported goods. The insights from those alternative traceability systems are transferred to products that might contain GMOs. When applied to the issue of GMOs, we propose reversing the burden of proof: All companies importing agricultural commodities must endeavour to identify risks of unauthorised GMOs (including NGTs) in their supply chain and, where appropriate, take measures to minimise the risk to raw material imports. The publication concludes that traceability is a means to an end and serves as a prerequisite for due diligence in order to minimise the risk of GMO contamination in supply chains. The exemplary transfer of due diligence to a company in the food industry illustrates the potential benefits of mandatory due diligence, particularly for stakeholders actively managing non-GMO supply chains. Full article
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45 pages, 3274 KiB  
Review
Bio-Dealcoholization of Wines: Can Yeast Make Lighter Wines?
by Sílvia Martins Afonso, António Inês and Alice Vilela
Fermentation 2024, 10(1), 36; https://doi.org/10.3390/fermentation10010036 - 1 Jan 2024
Cited by 11 | Viewed by 6387
Abstract
The relationship between climate change and viticulture has become increasingly apparent in recent years. Rising temperatures have been a critical factor in early grape ripening. This, in turn, has led to wines with imbalanced acidity and, more importantly, higher alcohol content and pH [...] Read more.
The relationship between climate change and viticulture has become increasingly apparent in recent years. Rising temperatures have been a critical factor in early grape ripening. This, in turn, has led to wines with imbalanced acidity and, more importantly, higher alcohol content and pH values. Today, consumers demand high-quality and healthy products, and this trend has extended to wine consumption. Consumers prefer wines with reduced alcohol content due to the health risks associated with alcohol consumption. To meet this demand, researchers have developed modified yeast strains that reduce wine alcohol content during fermentation. These strains ferment less sugar or redirect carbon metabolism. However, their use may pose challenges, such as producing undesired secondary metabolites that can affect wine characteristics. Additionally, consumers are still divided on using genetically modified organisms (GMOs) in food and beverages. This review examines the impact of climate change on wine quality and consumer perception, taking into account new technologies used to reduce wine alcohol content or produce low-alcohol-content wines, such as low-cost techniques like bio-dealcoholization performed by non-GMO wine yeast, Saccharomyces, and non-Saccharomyces. Full article
(This article belongs to the Special Issue Feature Review Papers in Fermentation for Food and Beverages 2023)
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17 pages, 1940 KiB  
Article
Specificity Testing for NGT PCR-Based Detection Methods in the Context of the EU GMO Regulations
by Caroline Bedin Zanatta, Aline Martins Hoepers, Rubens Onofre Nodari and Sarah Zanon Agapito-Tenfen
Foods 2023, 12(23), 4298; https://doi.org/10.3390/foods12234298 - 28 Nov 2023
Cited by 3 | Viewed by 2357
Abstract
The term new genomic techniques (NGTs) is an umbrella term used to describe a variety of techniques that can alter the genetic material of an organism and that have emerged or have been developed since 2001, when the existing genetically modified organism (GMO) [...] Read more.
The term new genomic techniques (NGTs) is an umbrella term used to describe a variety of techniques that can alter the genetic material of an organism and that have emerged or have been developed since 2001, when the existing genetically modified organism (GMO) legislation was adopted. The analytical framework used to detect GMOs in Europe is an established single harmonized procedure that is mandatory for the authorization of GM food and feed, thus generating a reliable, transparent, and effective labeling scheme for GMO products. However, NGT products can challenge the implementation and enforcement of the current regulatory system in the EU, relating in particular to the detection of NGT products that contain no foreign genetic material. Consequently, the current detection methods might fail to meet the minimum performance requirements. Although existing detection methods may be able to detect and quantify even small alterations in the genome, this does not necessarily confirm the distinction between products resulting from NGTs subject to the GMO legislation and other products. Therefore, this study provides a stepwise approach for the in silico prediction of PCR systems’ specificity by testing a bioinformatics pipeline for amplicon and primer set searches in current genomic databases. In addition, it also empirically tested the PCR system evaluated during the in silico analysis. Two mutant genotypes produced by CRISPR-Cas9 in Arabidopsis thaliana were used as a case study. Overall, our results demonstrate that the single PCR system developed for identifying a nucleotide insertion in the grf1-3 genotype has multiple matches in the databases, which do not enable the discrimination of this mutated event. Empirical assays further support this demonstration. In contrast, the second mutated genotype, grf8-61, which contains a -3 bp deletion, did not yield any matches in the sequence variant database. However, the primer sequences were not efficient during the empirical assay. Our approach represents a first step in decision making for analytical methods for NGT detection, identification, and quantification in light of the European labeling regulations. Full article
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14 pages, 295 KiB  
Article
Overcoming Agricultural Challenges with GMOs as a Catalyst for Poverty Reduction and Sustainability in Lebanon
by Richard J. Roberts and Viviane Naimy
Sustainability 2023, 15(23), 16187; https://doi.org/10.3390/su152316187 - 22 Nov 2023
Cited by 5 | Viewed by 4882
Abstract
This study assesses the potential impact of genetically modified organisms (GMOs) on poverty reduction and agricultural development in Lebanon, against a backdrop of economic crisis and agricultural uncertainties. GMO adoption is considered a viable strategy to enhance food security, spur economic growth, and [...] Read more.
This study assesses the potential impact of genetically modified organisms (GMOs) on poverty reduction and agricultural development in Lebanon, against a backdrop of economic crisis and agricultural uncertainties. GMO adoption is considered a viable strategy to enhance food security, spur economic growth, and alleviate poverty. Simulating various GMO adoption scenarios, specifically in the apple agriculture sector of Mount Lebanon’s Sannine–Baskinta area, this research examines their effects on poverty rates. The findings demonstrate a substantial reduction in poverty rates, from 55% to 36%, with a simulated GMO adoption rate of 70%, underscoring the transformative potential of GMOs in poverty alleviation. The study highlights the critical importance of well-informed decision-making and evidence-based policymaking to address challenges in the agriculture sector. It serves as a foundational pilot project for the introduction of genetically modified crops in Lebanese agriculture, with a focus on the Sannine–Baskinta region. The identified GMOs offer prospects for enhanced resilience to weather conditions and pests, reduced pesticide usage, elimination of chemical fertilizers, increased yield, and improved nutritional value. Future research endeavors aim to extend the project to encompass other crops and regions in Lebanon, as well as in other Arab countries. Full article
17 pages, 1866 KiB  
Article
Fast and Accurate Multiplex Identification and Quantification of Seven Genetically Modified Soybean Lines Using Six-Color Digital PCR
by Alexandra Bogožalec Košir, Sabine Muller, Jana Žel, Mojca Milavec, Allison C. Mallory and David Dobnik
Foods 2023, 12(22), 4156; https://doi.org/10.3390/foods12224156 - 17 Nov 2023
Cited by 10 | Viewed by 2180
Abstract
The proliferation of genetically modified organisms (GMOs) presents challenges to GMO testing laboratories and policymakers. Traditional methods, like quantitative real-time PCR (qPCR), face limitations in quantifying the increasing number of GMOs in a single sample. Digital PCR (dPCR), specifically multiplexing, offers a solution [...] Read more.
The proliferation of genetically modified organisms (GMOs) presents challenges to GMO testing laboratories and policymakers. Traditional methods, like quantitative real-time PCR (qPCR), face limitations in quantifying the increasing number of GMOs in a single sample. Digital PCR (dPCR), specifically multiplexing, offers a solution by enabling simultaneous quantification of multiple GMO targets. This study explores the use of the Naica six-color Crystal dPCR platform for quantifying five GM soybean lines within a single six-plex assay. Two four-color assays were also developed for added flexibility. These assays demonstrated high specificity, sensitivity (limit of detection or LOD < 25 copies per reaction) and precision (bias to an estimated copy number concentration <15%). Additionally, two approaches for the optimization of data analysis were implemented. By applying a limit-of-blank (LOB) correction, the limit of quantification (LOQ) and LOD could be more precisely determined. Pooling of reactions additionally lowered the LOD, with a two- to eight-fold increase in sensitivity. Real-life samples from routine testing were used to confirm the assays’ applicability for quantifying GM soybean lines in complex samples. This study showcases the potential of the six-color Crystal dPCR platform to revolutionize GMO testing, facilitating comprehensive analysis of GMOs in complex samples. Full article
(This article belongs to the Section Food Analytical Methods)
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