Search Results (37)

The escalating global demand for large-scale, cost-effective, and sustainable high-quality protein has positioned single-cell protein (SCP) production from one-carbon (C1) gases as a highly promising solution. In this study, eight chemolithoautotrophic hydrogen-oxidizing bacteria (HOB) were isolated from mangrove sediments. Based on the 16S rRNA gene sequence analysis, they belonged to genera Sulfurimonas, Sulfurovum, Thiomicrolovo, and Marinobacterium. Among these, Thiomicrolovo sp. ZZH C-3 was identified as the most promising candidate for SCP production based on the highest biomass and protein content, and was selected for further characterization. Strain ZZH C-3 is a Gram-negative, short rod-shaped bacterium with multiple flagella. It can grow chemolithoautotrophically by using molecular hydrogen as an energy source and molecular oxygen as an electron acceptor. Genomic analysis further confirmed that ZZH C-3 harbors a complete reverse tricarboxylic acid (rTCA) cycle gene set for carbon fixation, and diverse hydrogenases (Group I, II, IV) for hydrogen oxidation. Subsequently, its cultivation conditions and medium composition for SCP production were systematically optimized using single-factor experiments and response surface methodology (RSM). Results showed that the optimal growth conditions were 28 °C, pH 7.0, and with 1 g/L (NH₄)₂SO₄ as the nitrogen source, 5–10% oxygen concentration, 9.70 mg/L FeSO₄·7H₂O, 0.17 g/L CaCl₂·2H₂O, and 1.90 mg/L MnSO₄·H₂O. Under the optimized conditions, strain ZZH C-3 achieved a maximum specific growth rate of 0.46 h⁻¹. After 28 h of cultivation, the optical density at 600 nm (OD₆₀₀) reached 0.94, corresponding to a biomass concentration of 0.60 g/L, and the protein content ranked at 73.56%. The biomass yield on hydrogen (Y_H2) was approximately 3.01 g/g H₂, with an average H₂-to-CO₂ consumption molar ratio of about 3.78. Compared to the model HOB Cupriavidus necator, strain ZZH C-3 exhibited a lower H₂/CO₂ consumption ratio, superior substrate conversion efficiency, and high protein content. Overall, this study not only validated the potential of mangrove HOB for SCP production but also offers new insights for future metabolic engineering strategies designed to enhance CO₂-to-biomass conversion efficiency. Full article

Long-standing and chronic soil pollution in the Polar Regions is the most persistent. Simultaneous contamination with petroleum products and heavy metals puts additional load on the soil microbial community. The purpose of this work was to determine the composition of prokaryotes in the soils of Mount Kaskama with long-standing contamination with petroleum products and heavy metals (Murmansk region, Russia) and outside this zone and the potential ability of bacteria to participate in the self-purification of these soils. Using high-throughput sequencing of 16S rRNA gene V3–V4 fragments, an increase in the proportion of bacteria of the phyla Pseudomonadota, Verrucomicrobiota, Cyanobacteriota, and Bacillota was shown with an increase in soil contamination. Bacteria of the genera Bacillus, Caballeronia, Cytobacillus, Paenibacillus, Paraburkholderia, Pseudomonas, and Rhodanobacter were isolated from soil samples. Bacteria of the genus Paenibacillus capable of hydrocarbon oxidation and iron reduction were isolated from the subsurface contaminated layers. Under aerobic conditions, Fe(II) oxidation by bacteria of the genus Pseudomonas and biodegradation of hydrocarbons by isolated bacteria are possible. The isolated strains grew at low temperatures, used diesel fuel components, and were resistant to Cu(II), Ni(II), and Pb(II). The data obtained indicates the adaptation of bacterial communities to environmental conditions and the ability to participate in the process of soil self-healing. Full article

Chloride ions can enhance the bioleaching of copper minerals, yet most biomining microorganisms are highly sensitive to chloride and cannot survive or colonize mineral surfaces in saline environments. Chloride tolerance varies among acidophilic iron-oxidizing bacteria, but the concentrations at which they remain active are generally too low to permit the industrial use of seawater. Therefore, identifying highly chloride-tolerant leaching microorganisms and studying their bioleaching potential in chloride-containing systems is of utmost importance. This study investigated chloride tolerance and adaptability of bacteria from different genera, with a focus on Sulfobacillus thermosulfidooxidans subsp. asporogenes 41, a moderately thermophilic strain that can oxidize both Fe (II) and reduced inorganic sulfur compounds (RISCs). This dual activity makes it advantageous for bioleaching by facilitating sulfur removal, generating acidity, and preventing mineral passivation. Comparative experiments on the bioleaching of pyrite and chalcopyrite demonstrated that adaptation to 0.3 M NaCl enhanced the chloride tolerance of S. thermosulfidooxidans subsp. asporogenes 41. The adapted strain exhibited significantly improved copper extraction under saline conditions compared with the native culture. Maximum copper recovery was achieved at 0.4 M NaCl, highlighting the potential of chloride-adapted moderate thermophiles for biomining applications in saline environments. In contrast the minimal inhibitory concentration for Acidithiobacillud ferrooxidans Dr was 0.005 M (causing 41.2% inhibition), while Leptospirillum ferriphilum CC was unaffected by lower concentrations (0.01–0.02 M) and only showed severe inhibition (86.5%) at 0.1 M NaCl, defining its minimal inhibitory concentration (MIC) at 0.05 M. Full article

Iron, an essential element for virtually all known organisms, serves not only as a micronutrient but also as an energy source for bacteria. Iron-oxidizing microorganisms mediate Fe(II) oxidation under diverse redox conditions, yielding amorphous iron (hydr)oxides or crystalline iron minerals. This globally significant biogeochemical process drives modern iron cycling across terrestrial and aquatic ecosystems. The resulting biomineralization not only produces secondary minerals but also effectively immobilizes heavy metals, offering a sustainable strategy for environmental remediation. This review systematically examines (1) the biogeochemical mechanisms and mineralogical signatures of Fe(II) oxidation by four distinct iron oxidizers: acidophilic aerobes (e.g., Acidithiobacillus), neutrophilic microaerophiles (e.g., Gallionella), nitrate-reducing anaerobes (e.g., Acidovorax), and anoxygenic phototrophs (e.g., Rhodobacter); (2) research advances in heavy metal immobilization by biogenic iron minerals: adsorption, coprecipitation, and structural incorporation; and (3) the impact of pH, temperature, organic matter, and coexisting ions on Fe(II) oxidation efficiency and iron mineral formation by iron-oxidizing bacteria. By characterizing iron-oxidizing bacterial species and their functional processes under varying pH and redox conditions, this study provides critical insights into microbial behaviors driving the evolution of acid mine drainage (AMD). Full article

The quality of strong-flavor baijiu largely depends on the physicochemical properties and prokaryotic microbial activities of pit mud. However, the impact of the iron-bearing minerals in pit mud on its prokaryotic microbial communities remains unknown. This study examined the differences in the prokaryotic communities between 2-year, 40-year, and 100-year pit mud and yellow soil (the raw material for pit mud), as well as the impacts of environmental factors, particularly iron-bearing minerals, on the structure and diversity of these prokaryotic communities. The results indicated that there were significant differences in the composition of prokaryotic microorganisms between yellow soil and pit mud. As the fermentation pit aged, the relative abundance of dominant fermentation bacteria (including Petrimonas, Syntrophomonas, Clostridium, etc.) and hydrogenotrophic methanogens in the pit mud increased. The relative abundance of Lactobacillus in the 2-year pit mud was low (0.33%). Under laboratory conditions, goethite (a typical crystalline iron mineral, denoted as Fe_c) reduced the physiological and metabolic activity of Lacticaseibacillus paracasei JN01 in a concentration-dependent manner. The results of the physicochemical analysis showed that the contents of total iron (TFe) and Fe_c significantly decreased, while the contents of Fe(II) and amorphous iron (hydr)oxides (Fe_o) significantly increased with an increasing fermentation pit age. TFe and Fe_c were significantly negatively correlated with both the Chao1 and Shannon indexes and functional microorganisms such as Clostridium_sensu_stricto_12, Sedimentibacter, and hydrogenotrophic methanogens. The current results contribute to our understanding of the aging process of pit mud from the perspective of the interaction between iron-bearing minerals and prokaryotic microorganisms. Full article

Feammox, one of the potential pathways for nitrogen loss in the environment, plays an essential role in nitrogen cycling and provides new ideas for the biological denitrification of wastewater. However, the Feammox reaction has low nitrogen removal efficiency and stagnates due to insufficient Fe(III) sources. It strongly depends on an Fe(III) source supply, significantly limiting its development. In this study, a synergistic nitrogen removal system using Feammox and Nitrate-Dependent Fe(II) Oxidation (NDFO) driven by NO₃⁻-N was constructed within an organic carbon environment. It uses the synergy between Feammox and NDFO to improve nitrogen removal. The removal efficiency of NH₄⁺-N reaches over 70% in stages III-V, with a maximum removal efficiency of 89.4%. NH₄⁺-N oxidation and Fe(III) reduction are positively coupled in the Feammox reaction. The Fe(II)/Fe(III) cycle process driven by Feammox and NDFO improves the utilization of the iron source, thus guaranteeing the sustainability of the NH₄⁺-N oxidation reaction. In addition, the organic carbon environment also enriched NDFO bacteria (Thermomonas and Acinetobacter) and increased the reaction rate of NDFO, which enhanced the transformation of Fe(II). We improved the nitrogen removal efficiency of Feammox and provided a new approach for nitrogen removal in wastewater treatment. Full article

Iron, Earth’s most abundant redox-active metal, undergoes both abiotic and microbial redox reactions that regulate the formation, transformation, and dissolution of iron minerals. The electron transfer between ferrous iron (Fe(II)) and ferric iron (Fe(III)) is critical for mineral dynamics, pollutant remediation, and global biogeochemical cycling. Bacteria play a significant role, especially in anaerobic Fe(II) oxidation, contributing to Fe(III) mineral formation in oxygen-depleted environments. In iron-rich, neutral anaerobic settings, microbial nitrate-reducing Fe(II) oxidation (NRFO) and iron reduction processes happen simultaneously. This study used Shewanella oneidensis MR-1 to create an anaerobic NRFO system between Fe(II) and nitrate, revealing concurrent Fe(II) oxidation and nitrate reduction. Both gene-mediated biological Fe(II) oxidation and chemical Fe(II) oxidation, facilitated by nitrite (a byproduct of nitrate reduction), were observed. The MtrABC gene cluster was linked to this process. At low Fe(II) concentrations, toxicity and mineral precipitation inhibited nitrate reduction by Shewanella oneidensis MR-1, whereas high Fe(II) levels led to Fe(II) oxidation, resulting in cell encrustation, which further constrained nitrate reduction. Full article

The microbial reduction of Fe(III) is a major component of Fe cycling in terrestrial and aquatic environments and is affected by the Fe(III) mineralogy of the system. The majority of the research examining the bioreduction of Fe(III) oxides by Fe(III)-reducing bacteria (IRB) has focused on the reduction of poorly crystalline Fe(III) phases, primarily ferrihydrite; however, crystalline Fe(III) oxides like goethite (α-FeOOH) and hematite (α-Fe₂O₃) comprise the majority of Fe(III) oxides in soils. This study examined the bioreduction of goethite and hematite of geogenic and synthetic origin by Shewanella putrefaciens CN2, a well-studied model IRB, in laboratory incubations. Overall, the rate and extent of Fe(II) production were greater for goethite than for hematite, and for geogenic Fe(III) oxides relative to their synthetic analogs. Although there was substantial production of Fe(II) (i.e., >5 mM Fe(II)) in many of the systems, X-ray diffraction analysis of the solids at the end of the incubation did not indicate the formation of any Fe(II)-bearing secondary minerals (e.g., magnetite, siderite, green rust, etc.). The results of this study demonstrate the variability in the extent of bioreduction of geogenic goethite and hematite, and furthermore, that synthetic goethite and hematite may not be good analogs for the biogeochemical behavior of Fe(III) oxides in aquatic and terrestrial environments. Full article

The Amarillo River in Famatina, La Rioja, Argentina, is a natural acidic river with distinctive yellow-ochreous iron precipitates along its course. While mining activities have occurred in the area, the river’s natural acidity is influenced by environmental factors beyond mineralogy, where microbial species have a crucial role. Although iron-oxidising bacteria have been identified, a comprehensive analysis of the entire microbial community in this extreme environment has not yet been conducted. In this study, we employ high-throughput sequencing to explore the bacterial and fungal diversity in the Amarillo River and Cueva de Pérez terraces, considered prehistoric analogues of the current river basin. Fe(II)-enrichment cultures mimicking different environmental conditions of the river were also analysed to better understand the roles of prokaryotes and fungi in iron oxidation processes. Additionally, we investigate the ecological relationships between bacteria and fungi using co-occurrence and network analysis. Our findings reveal a diverse bacterial community in the river and terraces, including uncultured species affiliated with Acidimicrobiia, part of an uncharacterised universal microbial acidic diversity. Acidophiles such as Acidithiobacillus ferrivorans, the main iron oxidiser of the system, and Acidiphilium, which is unable to catalyse Fe(II) oxidation but has a great metabolic flexibility,, are part of the core of the microbial community, showing significant involvement in intraspecies interactions. Alicyclobacillus, which is the main Fe(II) oxidiser in the enrichment culture at 30 °C and is detected all over the system, highlights its flexibility towards the iron cycle. The prevalence of key microorganisms in both rivers and terraces implies their enduring contribution to the iron cycle as well as in shaping the iconic yellow landscape of the Amarillo River. In conclusion, this study enhances our understanding of microbial involvement in iron mineral precipitation, emphasising the collaborative efforts of bacteria and fungi as fundamental geological agents in the Amarillo River. Full article

Kombucha is a fermented tea drink produced by a symbiotic culture of bacteria and yeast, known as SCOBY. Its base has traditionally been black tea, which has been recognized for its health-promoting properties, particularly its antioxidant activity based on its high content of pol-yphenolic compounds. A number of previous studies have demonstrated the equally favourable biochemical and phytochemical composition of green tea. The aim of this study was to analyse and compare the basic biochemical composition, microbiological composition and antioxidant properties of black and green tea-based Kombucha. The green tea-based Kombucha showed a quantitatively more abundant microbial composition (Lactic Acid Bacteria, Acetobacter sp., Yeast), a higher reducing potential (FRAP—4326.58 Fe(II)µM/L) and a higher content of total polyphenols (23.84 mg GAE/100 mL, reducing sugars (3212.00 mg/100 mL) as well as free amino acids (849.00 mg GLY/mL). Kombucha made from black tea, on the other hand, showed a higher anti-oxidant potential (1.17 Trolox (mM) TEAC), neutralising the DPPH radical at 94.33% and ABTS at 97.74%. It also had a higher level of acetic acid (0.08 g/100 mL). Green tea kombucha had a higher scavenging capacity of 90.6% for superoxide radical (O₂⁻) and 69.28% for hydroxyl radical (·OH) than black tea kombucha. In the present study, both kombucha drinks tested were shown to be source of potent antioxidants. In addition, green tea, as a kombucha base, has proven to be as beneficial a raw material that will provide full nutritional and health-promoting values as traditional kombucha. Full article

Arsenic (As) is a highly toxic metalloid, and its widespread contamination of water is a serious threat to human health. This study explored As removal using Fe(II)-oxidizing bacteria. The strain Fe7 isolated from iron mine soil was classified as the genus Pseudarthrobacter based on 16S rRNA gene sequence similarities and phylogenetic analyses. The strain Fe7 was identified as a strain of Gram-positive, rod-shaped, aerobic bacteria that can oxidize Fe(II) and produce iron mineral precipitates. X-ray diffraction, X-ray photoelectron spectroscopy, and energy-dispersive X-ray spectroscopy patterns showed that the iron mineral precipitates with poor crystallinity consisted of Fe(III) and numerous biological impurities. In the co-cultivation of the strain Fe7 with arsenite (As(III)), 100% of the total Fe and 99.9% of the total As were removed after 72 h. During the co-cultivation of the strain Fe7 with arsenate (As(V)), 98.4% of the total Fe and 96.9% of the total As were removed after 72 h. Additionally, the iron precipitates produced by the strain Fe7 removed 100% of the total As after 3 h in both the As(III) and As(V) pollution systems. Furthermore, enzyme activity experiments revealed that the strain Fe7 oxidized Fe(II) by producing extracellular enzymes. When 2% (v/v) extracellular enzyme liquid of the strain Fe7 was added to the As(III) or As(V) pollution system, the total As removal rates were 98.6% and 99.4%, respectively, after 2 h, which increased to 100% when 5% (v/v) and 10% (v/v) extracellular enzyme liquid of the strain Fe7 were, respectively, added to the As(III) and As(V) pollution systems. Therefore, iron biomineralized using a co-culture of the strain Fe7 and As, iron precipitates produced by the strain Fe7, and the extracellular enzymes of the strain Fe7 could remove As(III) and As(V) efficiently. This study provides new insights and strategies for the efficient remediation of arsenic pollution in aquatic environments. Full article

Steelmaking slags are prospective base materials for seaweed beds, resulting from a continuous process of biofouling, starting from biofilm formation and leading to growing algae. While focusing on biofilm formation, we investigated specific features of steelmaking slags when utilized as a base for seaweed beds by comparing the bacterial communities in marine biofilms between steelmaking slags and artificially produced ones. Genomic DNA was extracted from the biofilms collected on days 3 and 7, and partial 16S rRNA libraries were generated and sequenced by second-generation next-generation sequencing. The read sequences were analyzed using QIIME 2™, then heatmaps and non-metric multidimensional scaling based on the Bray–Curtis dissimilarity index in the R program. Rhodobacteraceae and Flavobacteriaceae were the most dominant family members in all samples on both days 3 and 7. However, Mariprofundus, comprising iron-oxidative bacteria, was predominantly detected in the samples of steelmaking slags on day 7. This suggested that the growth of Mariprofundus was dependent on Fe(II) ion concentration and that steelmaking slags eluted Fe(II) ions more easily than artificial slags. In contrast, Sulfurovaceae, sulfur-oxidizing bacteria, were dominantly present in all samples on day 3, but decreased by day 7, regardless of the sulfur content. It was supposed that engine oil-derived sulfur compounds strongly influenced Sulfurovaceae growth, whereas slag-derived sulfur compounds did not. Heatmap analysis indicated that the submersion period significantly influenced the bacterial communities, regardless of the differences in the main slag content ratios. Summarizing these results, the elution characteristics of steelmaking slags have the potential to influence the formation of marine biofilms, and this formation is significantly influenced by environmental conditions. Full article

Since Mn, Fe and As contaminants often coexist in the environment, we hypothesize that the presence of multifunctional bacteria is capable of reducing Mn and Fe oxides and promoting the mobilization and release of arsenic. However, such bacteria have not been reported yet; moreover, the impact of bacteria with the ability to simultaneously reduce Mn and Fe oxides on the formation of high-arsenic groundwater remains unclear. This study aims to address this question. Here, we found that the microbial community in the soils was able to efficiently reduce Mn oxides into Mn(II). An analysis of the microbial community structures of the soil shows that it contained Proteobacteria (41.1%), Acidobacteria (10.9%), Actinobacteria (9.5%) and other less abundant bacteria. Based on this observation, we successfully isolated a novel bacterium Cellulomonas sp. CM1, which possesses both Mn- and Fe-oxide-reducing activities. Under anaerobic conditions, strain CM1 can reduce Mn oxides, resulting in the production of 13 mg/L of Mn(II) within a span of 10 days. Simultaneously, it can reduce Fe oxides, leading to the generation of 9 mg/L of Fe(II) within 9 days when a yeast extract is used as an electron donor. During these reduction reactions, the cells were grown into a density of OD₆₀₀ 0.16 and 0.09, respectively, suggesting that Mn(IV) is more beneficial for the bacterial growth than Fe(III). Arsenic release assays indicate that after 108 days of anoxic incubation, approximately 126.2, 103.2 and 81.5 μg/L As(V) were mobilized and released from three soil samples, respectively, suggesting that CM1 plays significant roles in driving mobilization of arsenic from soils. These findings shed new light on the microbial processes that lead to the generation of arsenic-contaminated groundwater. Full article

In accordance with Thai wisdom, indigenous plant leaves have been used as food packaging to preserve freshness. Many studies have demonstrated that both antioxidant and antimicrobial activities contribute to protecting food from spoilage. Hence, the ethanolic extracts of leaves from selected plants traditionally used as food packaging, including Nelumbo nucifera (1), Cocos nucifera (2), Nypa fruticans (3), Nepenthes mirabilis (4), Dendrocalamus asper (5), Cephalostachyum pergracile (6), Musa balbisiana (7), and Piper sarmentosum (8), were investigated to determine whether they have antioxidant and antimicrobial activities against spoilage microorganisms and foodborne pathogens that might be beneficial for food quality. Extracts 1–4 exhibited high phenolic content at 82.18–115.15 mg GAE/g and high antioxidant capacity on DPPH, FRAP and SRSA assay at 14.71–34.28 μg/mL, 342.92–551.38 μmol Fe²⁺/g, and 11.19–38.97 μg/mL, respectively, while leaf extracts 5–8 showed lower phenolic content at 34.43–50.08 mg GAE/g and lower antioxidant capacity on DPPH, FRAP, and SRSA at 46.70–142.16 μg/mL, 54.57–191.78 μmol Fe²⁺/g, and 69.05–>120 μg/mL, respectively. Extracts 1–4 possessed antimicrobial activities against food-relevant bacteria, including Staphylococcus aureus, Bacillus cereus, Listeria monocytogenes, and Escherichia coli. Only N. mirabilis extract (4) showed antimicrobial activities against Salmonella enterica subsp. enterica serovar Abony and Candida albicans. Extracts 5–8 showed slight antimicrobial activities against B. cereus and E. coli. As the growth and activity of microorganisms are the main cause of food spoilage, N. fruticans (3) was selected for bioassay-guided isolation to obtain 3-O-caffeoyl shikimic acid (I), isoorientin (II) and isovitexin (III), which are responsible for its antimicrobial activity against foodborne pathogens. N. fruticans was identified as a new source of natural antimicrobial compounds I–III, among which 3-O-caffeoyl shikimic acid was proven to show antimicrobial activity for the first time. These findings support the use of leaves for wrapping food and protecting food against oxidation and foodborne pathogens through their antioxidant and antimicrobial activities, respectively. Thus, leaves could be used as a natural packaging material and natural preservative. Full article

Iron-sulfur (Fe-S) clusters are inorganic prosthetic groups in proteins composed exclusively of iron and inorganic sulfide. These cofactors are required in a wide range of critical cellular pathways. Iron-sulfur clusters do not form spontaneously in vivo; several proteins are required to mobilize sulfur and iron, assemble and traffic-nascent clusters. Bacteria have developed several Fe-S assembly systems, such as the ISC, NIF, and SUF systems. Interestingly, in Mycobacterium tuberculosis (Mtb), the causative agent of tuberculosis (TB), the SUF machinery is the primary Fe-S biogenesis system. This operon is essential for the viability of Mtb under normal growth conditions, and the genes it contains are known to be vulnerable, revealing the Mtb SUF system as an interesting target in the fight against tuberculosis. In the present study, two proteins of the Mtb SUF system were characterized for the first time: Rv1464(sufS) and Rv1465(sufU). The results presented reveal how these two proteins work together and thus provide insights into Fe-S biogenesis/metabolism by this pathogen. Combining biochemistry and structural approaches, we showed that Rv1464 is a type II cysteine-desulfurase enzyme and that Rv1465 is a zinc-dependent protein interacting with Rv1464. Endowed with a sulfurtransferase activity, Rv1465 significantly enhances the cysteine-desulfurase activity of Rv1464 by transferring the sulfur atom from persulfide on Rv1464 to its conserved Cys40 residue. The zinc ion is important for the sulfur transfer reaction between SufS and SufU, and His354 in SufS plays an essential role in this reaction. Finally, we showed that Mtb SufS-SufU is more resistant to oxidative stress than E. coli SufS-SufE and that the presence of zinc in SufU is likely responsible for this improved resistance. This study on Rv1464 and Rv1465 will help guide the design of future anti-tuberculosis agents. Full article