Search Results (24)

Probabilistic models are used to describe random processes and quantify prediction uncertainties in a principled way. Examples include geotechnical and geological investigations that seek to model subsurface hydrostratigraphic properties or mineral deposits. In mining geology, model validation efforts have generally lagged behind the development and deployment of computational models. One problem is the lack of industry guidelines for evaluating the uncertainty and predictive performance of probabilistic ore grade models. This paper aims to bridge this gap by developing a holistic approach that is autonomous, scalable and transferable across domains. The proposed model assessment targets three objectives. First, we aim to ensure that the predictions are reasonably calibrated with probabilities. Second, statistics are viewed as images to help facilitate large-scale simultaneous comparisons for multiple models across space and time, spanning multiple regions and inference periods. Third, variogram ratios are used to objectively measure the spatial fidelity of models. In this study, we examine models created by ordinary kriging and the Gaussian process in conjunction with sequential or random field simulations. The assessments are underpinned by statistics that evaluate the model’s predictive distributions relative to the ground truth. These statistics are standardised, interpretable and amenable to significance testing. The proposed methods are demonstrated using extensive data from a real copper mine in a grade estimation task and are accompanied by an open-source implementation. The experiments are designed to emphasise data diversity and convey insights, such as the increased difficulty of future-bench prediction (extrapolation) relative to in situ regression (interpolation). This work enables competing models to be evaluated consistently and the robustness and validity of probabilistic predictions to be tested, and it makes cross-study comparison possible irrespective of site conditions. Full article

Dibenzyltoluene/perhydro-dibenzyltoluene (H₀DBT/H₁₈DBT) is considered a promising liquid organic hydrogen carrier (LOHC) pair for the storage and transportation of green hydrogen (H₂). However, at the point of use, the catalytic dehydrogenation of H₁₈DBT is still limited by mass transport limitations. To address this issue, the dehydrogenation of H₁₈DBT was successfully conducted on Pt/Al₂O₃-coated foams in both an unstirred tank reactor and a fixed-bed reactor (FBR). A performance comparison between coated foams and pellets in the tank reactor revealed that H₂ productivities were 12–59% higher in the foam-based reactor than in the pellet-based reactor. Since the textural properties of the foam-supported and pellet-based catalysts were similar, the higher degree of dehydrogenation (DoD) and H₂ productivity achieved by the former were attributed to the geometric properties of the foam structure. Long-term tests performed in the FBR demonstrated the ability of the coated foams to maintain steady activity for >16 h on stream. However, the single-pass DoDs achieved were 34–38%. By recycling the partially dehydrogenated products three times into the FBR, the DoD improved to 63%. The results of this study demonstrated the capabilities of the coated foams in the process intensification of LOHC dehydrogenation reactors. Full article

L-cone opsin expression by gene therapy is a promising treatment for blue cone monochromacy (BCM) caused by congenital lack of long- and middle-wavelength-sensitive (L/M) cone function. Eight patients with BCM and confirmed pathogenic variants at the OPN1LW/OPN1MW gene cluster participated. Optical coherence tomography (OCT), chromatic perimetry, chromatic microperimetry, chromatic visual acuity (VA), and chromaticity thresholds were performed with unmodified commercial equipment and/or methods available in the public domain. Adaptive optics scanning laser ophthalmoscope (AOSLO) imaging was performed in a subset of patients. Outer retinal changes were detectable by OCT with an age-related effect on the foveal disease stage. Rod and short-wavelength-sensitive (S) cone functions were relatively retained by perimetry, although likely impacted by age-related increases in the pre-retinal absorption of short-wavelength lights. The central macula showed a large loss of red sensitivity on dark-adapted microperimetry. Chromatic VAs with high-contrast red gratings on a blue background were not detectable. Color vision was severely deficient. AOSLO imaging showed reduced total cone density with majority of the population being non-waveguiding. This study developed and evaluated specialized outcomes that will be needed for the determination of efficacy and safety in human clinical trials. Dark-adapted microperimetry with a red stimulus sampling the central macula would be a key endpoint to evaluate the light sensitivity improvements. VA changes specific to L-opsin can be measured with red gratings on a bright blue background and should also be considered as outcome measures in future interventional trials. Full article

Climate change (CC) represents an increasing threat to mangroves worldwide and can amplify impacts caused by local anthropogenic activities. The direct effects of CC on mangrove forests have been extensively discussed, but indirect impacts such as the alteration of ecological processes driven by specific functional groups of the biota are poorly investigated. Ecological roles of key functional groups (FGs) in mangroves from the Atlantic–Caribbean–East Pacific (ACEP) and Indo-West Pacific (IWP) regions are reviewed, and impacts from CC mediated by these FGs are explored. Disruption by CC of ecological processes, driven by key FGs, can reinforce direct effects and amplify the loss of ecological functionality and further degradation of mangrove forests. Biogeochemistry mediator microbiotas of the soil, bioturbators, especially semiterrestrial crabs (Ocypodoids and Grapsoids) and herbivores (crustaceans and Insects), would be the most affected FG in both regions. Effects of climate change can vary regionally in the function of the combination of direct and indirect drivers, further eroding biodiversity and mangrove resilience, and impairing the predictability of ecosystem behaviour. This means that public policies to manage and conserve mangroves, as well as rehabilitation/restoration programs, should take into consideration the pressures of CC in specific regions and the response of key FGs to these pressures. Full article

Deficits in memory performance have been linked to a wide range of neurological and neuropsychiatric conditions. While many studies have assessed the memory impacts of individual conditions, this study considers a broader perspective by evaluating how memory recall is differentially associated with nine common neuropsychiatric conditions using data drawn from 55 international studies, aggregating 15,883 unique participants aged 15–90. The effects of dementia, mild cognitive impairment, Parkinson’s disease, traumatic brain injury, stroke, depression, attention-deficit/hyperactivity disorder (ADHD), schizophrenia, and bipolar disorder on immediate, short-, and long-delay verbal learning and memory (VLM) scores were estimated relative to matched healthy individuals. Random forest models identified age, years of education, and site as important VLM covariates. A Bayesian harmonization approach was used to isolate and remove site effects. Regression estimated the adjusted association of each clinical group with VLM scores. Memory deficits were strongly associated with dementia and schizophrenia (p < 0.001), while neither depression nor ADHD showed consistent associations with VLM scores (p > 0.05). Differences associated with clinical conditions were larger for longer delayed recall duration items. By comparing VLM across clinical conditions, this study provides a foundation for enhanced diagnostic precision and offers new insights into disease management of comorbid disorders. Full article

Diamonds produced using chemical vapor deposition (CVD) have found many applications in various fields of science and technology. Many applications involve polycrystalline CVD diamond films of micron thicknesses. However, a variety of optical, thermal, mechanical, and radiation sensing applications require more bulky CVD diamond samples. We report the results of a magnetic resonance and structural study of a thick, sizable polycrystalline CVD diamond disc, both as-prepared and treated with e-beam irradiation/high-temperature annealing, as well as gamma irradiation. The combination of various magnetic resonance techniques reveals and enables the attribution of a plentiful collection of paramagnetic defects of doublet and triplet spin origin. Analysis of spectra, electron, and nuclear spin relaxation, as well as nuclear spin diffusion, supports the conclusion of significant macro- and micro-inhomogeneities in the distribution of nitrogen-related defects. Full article

We describe the process to design, architect, and implement a transformative enhancement of the Event Horizon Telescope (EHT). This program—the next-generation Event Horizon Telescope (ngEHT)—will form a networked global array of radio dishes capable of making high-fidelity real-time movies of supermassive black holes (SMBH) and their emanating jets. This builds upon the EHT principally by deploying additional modest-diameter dishes to optimized geographic locations to enhance the current global mm/submm wavelength Very Long Baseline Interferometric (VLBI) array, which has, to date, utilized mostly pre-existing radio telescopes. The ngEHT program further focuses on observing at three frequencies simultaneously for increased sensitivity and Fourier spatial frequency coverage. Here, the concept, science goals, design considerations, station siting, and instrument prototyping are discussed, and a preliminary reference array to be implemented in phases is described. Full article

Leiomyosarcoma (LMS) is a rare, aggressive mesenchymal tumor with smooth muscle differentiation. LMS is one of the most common histologic subtypes of soft tissue sarcoma; it most frequently occurs in the extremities, retroperitoneum, or uterus. LMS often demonstrates aggressive tumor biology, with a higher risk of developing distant metastatic disease than most sarcoma histologic types. The prognosis is poor, particularly in patients with uterine disease, and there is a need for the development of more effective therapies. Genetically, LMS is karyotypically complex and characterized by a low tumor mutational burden, with frequent alterations in TP53, RB1, PTEN, and DNA damage response pathways that may contribute to resistance against immune-checkpoint blockade monotherapy. The LMS immune microenvironment is highly infiltrated with tumor-associated macrophages and tumor-infiltrating lymphocytes, which may represent promising biomarkers. This review provides an overview of the clinical and pathologic behavior of both soft tissue and uterine LMS and summarizes the genomic and immune characteristics of these tumors and how they may provide opportunities for the development of biomarker-based immune therapies. Full article

In the past few years, the Event Horizon Telescope (EHT) has provided the first-ever event horizon-scale images of the supermassive black holes (BHs) M87${}^{*}$ and Sagittarius A${}^{*}$ (Sgr A${}^{*}$). The next-generation EHT project is an extension of the EHT array that promises larger angular resolution and higher sensitivity to the dim, extended flux around the central ring-like structure, possibly connecting the accretion flow and the jet. The ngEHT Analysis Challenges aim to understand the science extractability from synthetic images and movies to inform the ngEHT array design and analysis algorithm development. In this work, we compare the accretion flow structure and dynamics in numerical fluid simulations that specifically target M87${}^{*}$ and Sgr A${}^{*}$, and were used to construct the source models in the challenge set. We consider (1) a steady-state axisymmetric radiatively inefficient accretion flow model with a time-dependent shearing hotspot, (2) two time-dependent single fluid general relativistic magnetohydrodynamic (GRMHD) simulations from the H-AMR code, (3) a two-temperature GRMHD simulation from the BHAC code, and (4) a two-temperature radiative GRMHD simulation from the KORAL code. We find that the different models exhibit remarkably similar temporal and spatial properties, except for the electron temperature, since radiative losses substantially cool down electrons near the BH and the jet sheath, signaling the importance of radiative cooling even for slowly accreting BHs such as M87${}^{*}$. We restrict ourselves to standard torus accretion flows, and leave larger explorations of alternate accretion models to future work. Full article

We present a case for significantly enhancing the utility and efficiency of the ngEHT by incorporating an additional 86 GHz observing band. In contrast to 230 or 345 GHz, weather conditions at the ngEHT sites are reliably good enough for 86 GHz to enable year-round observations. Multi-frequency imaging that incorporates 86 GHz observations would sufficiently augment the $(u,v)$ coverage at 230 and 345 GHz to permit detection of the M87 jet structure without requiring EHT stations to join the array. The general calibration and sensitivity of the ngEHT would also be enhanced by leveraging frequency phase transfer techniques, whereby simultaneous observations at 86 GHz and higher-frequency bands have the potential to increase the effective coherence times from a few seconds to tens of minutes. When observation at the higher frequencies is not possible, there are opportunities for standalone 86 GHz science, such as studies of black hole jets and spectral lines. Finally, the addition of 86 GHz capabilities to the ngEHT would enable it to integrate into a community of other VLBI facilities—such as the GMVA and ngVLA—that are expected to operate at 86 GHz but not at the higher ngEHT observing frequencies. Full article

The next-generation Event Horizon Telescope (ngEHT) will be a significant enhancement of the Event Horizon Telescope (EHT) array, with ∼10 new antennas and instrumental upgrades of existing antennas. The increased $uv$-coverage, sensitivity, and frequency coverage allow a wide range of new science opportunities to be explored. The ngEHT Analysis Challenges have been launched to inform the development of the ngEHT array design, science objectives, and analysis pathways. For each challenge, synthetic EHT and ngEHT datasets are generated from theoretical source models and released to the challenge participants, who analyze the datasets using image reconstruction and other methods. The submitted analysis results are evaluated with quantitative metrics. In this work, we report on the first two ngEHT Analysis Challenges. These have focused on static and dynamical models of M87* and Sgr A* and shown that high-quality movies of the extended jet structure of M87* and near-horizon hourly timescale variability of Sgr A* can be reconstructed by the reference ngEHT array in realistic observing conditions using current analysis algorithms. We identify areas where there is still room for improvement of these algorithms and analysis strategies. Other science cases and arrays will be explored in future challenges. Full article

Merkel cell carcinoma (MCC) is a rare but aggressive form of skin cancer predominantly caused by the human Merkel cell polyomavirus (MCPyV). Treatment for MCC includes excision and radiotherapy of local disease, and chemotherapy or immunotherapy for metastatic disease. The schweinfurthin family of natural compounds previously displayed potent and selective growth inhibitory activity against the NCI-60 panel of human-derived cancer cell lines. Here, we investigated the impact of schweinfurthin on human MCC cell lines. Treatment with the schweinfurthin analog, 5′-methylschweinfurth G (MeSG also known as TTI-3114), impaired metabolic activity through induction of an apoptotic pathway. MeSG also selectively inhibited PI3K/AKT and MAPK/ERK pathways in the MCPyV-positive MCC cell line, MS-1. Interestingly, expression of the MCPyV small T (sT) oncogene selectively sensitizes mouse embryonic fibroblasts to MeSG. These results suggest that the schweinfurthin family of compounds display promising potential as a novel therapeutic option for virus-induced MCCs. Full article

The COVID-19 pandemic has had a staggering impact on social, economic, and public health systems worldwide. Vaccine development and mobilization against SARS-CoV-2 (the etiologic agent of COVID-19) has been rapid. However, novel strategies are still necessary to slow the pandemic, and this includes new approaches to vaccine development and/or delivery that will improve vaccination compliance and demonstrate efficacy against emerging variants. Here, we report on the immunogenicity and efficacy of a SARS-CoV-2 vaccine comprising stabilized, pre-fusion spike protein trimers displayed on a ferritin nanoparticle (SpFN) adjuvanted with either conventional aluminum hydroxide or the Army Liposomal Formulation QS-21 (ALFQ) in a cynomolgus macaque COVID-19 model. Vaccination resulted in robust cell-mediated and humoral responses and a significant reduction in lung lesions following SARS-CoV-2 infection. The strength of the immune response suggests that dose sparing through reduced or single dosing in primates may be possible with this vaccine. Overall, the data support further evaluation of SpFN as a SARS-CoV-2 protein-based vaccine candidate with attention to fractional dosing and schedule optimization. Full article

The phenomenon of individual variability in susceptibility/resilience to stress and depression, in which the hippocampus plays a pivotal role, is attracting increasing attention. We investigated the potential role of hippocampal cyclooxygenase-2 (COX-2), which regulates plasticity, neuroimmune function, and stress responses that are all linked to this risk dichotomy. We used a four-week-long chronic mild stress (CMS) paradigm, in which mice could be stratified according to their susceptibility/resilience to anhedonia, a key feature of depression, to investigate hippocampal expression of COX-2, a marker of microglial activation Iba-1, and the proliferation marker Ki67. Rat exposure, social defeat, restraints, and tail suspension were used as stressors. We compared the effects of treatment with either the selective COX-2 inhibitor celecoxib (30 mg/kg/day) or citalopram (15 mg/kg/day). For the celecoxib and vehicle-treated mice, the Porsolt test was used. Anhedonic (susceptible) but not non-anhedonic (resilient) animals exhibited elevated COX-2 mRNA levels, increased numbers of COX-2 and Iba-1-positive cells in the dentate gyrus and the CA1 area, and decreased numbers of Ki67-positive cells in the subgranular zone of the hippocampus. Drug treatment decreased the percentage of anhedonic mice, normalized swimming activity, reduced behavioral despair, and improved conditioned fear memory. Hippocampal over-expression of COX-2 is associated with susceptibility to stress-induced anhedonia, and its pharmacological inhibition with celecoxib has antidepressant effects that are similar in size to those of citalopram. Full article

Since early 2020, COVID-19 has grown to affect the lives of billions globally. A worldwide investigation has been ongoing for characterizing the virus and also for finding an effective drug and developing vaccines. As time has been of the essence, a crucial part of this research has been drug repurposing; therefore, confirmation of in silico drug screening studies have been carried out for this purpose. Here we demonstrated the possibility of screening a variety of drugs efficiently by leveraging a high data collection rate of 120 images/second with the new low-noise, high dynamic range ePix10k2M Pixel Array Detector installed at the Macromolecular Femtosecond Crystallography (MFX) instrument at the Linac Coherent Light Source (LCLS). The X-ray Free-Electron Laser (XFEL) is used for remote high-throughput data collection for drug repurposing of the main protease (Mpro) of SARS-CoV-2 at ambient temperature with mitigated X-ray radiation damage. We obtained multiple structures soaked with nine drug candidate molecules in two crystal forms. Although our drug binding attempts failed, we successfully established a high-throughput Serial Femtosecond X-ray crystallographic (SFX) data collection protocol. Full article