Plant Virus Surveillance and Metagenomics 2026
A special issue of Viruses (ISSN 1999-4915). This special issue belongs to the section "Viruses of Plants, Fungi and Protozoa".
Deadline for manuscript submissions: 31 December 2026 | Viewed by 2308
Editors
Interests: exotic and emerging citrus viruses; virus discovery and detection; virus evolution; diagnostic development and validation
Special Issue Information
Dear Colleagues,
The advent of ground-breaking high-throughput sequencing (HTS) technology advanced plant virus surveillance by identifying the ‘unknown known’ and ‘unknown unknown’ viral pathogens in crops and ecosystems without a priori knowledge. The main goals of plant virus surveillance are to protect food security and trade by (i) determining common viruses in certain regions, (ii) identifying early detection and prevention of new outbreaks, (iii) quantifying crop losses, and (iv) developing management strategies to support plant health and agroecology studies. All these goals can be achieved through utilizing revolutionized metagenomics approach by analyzing comprehensive viral profiling in HTS data derived from crops, weeds, and vectors, enabling identification of known and the discovery of novel viruses, identifying new threats, understanding virus ecology (like co-infections and host–virus dynamics), permitting early detection for rapid response, and informing disease control strategies in agriculture and wild plants for better agroecosystem health.
This Special Issue will highlight the use of metagenomics supporting food security and better pest management through broad-spectrum monitoring via (i) comprehensive analysis of entire viral communities (viromes) in single or multiple samples procured from diversified plant species, (ii) novel viruses discovery beyond known virus detection, (iii) virus distribution map in wild and crop plants, (iv) virus ecology (reservoirs, vectors), (v) virus detection in asymptomatic infections and provide early warnings for emerging threats. Submitted papers can include original research, perspective, and review articles within the scope of this Special Issue.
Dr. Avijit Roy
Dr. Alejandro Olmedo-Velarde
Guest Editors
Manuscript Submission Information
Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 250 words) can be sent to the Editorial Office for assessment.
Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-anonymized peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Viruses is an international peer-reviewed open access monthly journal published by MDPI.
Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2600 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.
Keywords
- high-throughput sequencing (HTS)
- virome analysis
- bioinformatics tools
- molecular diagnostics
- novel virus discovery
- reservoir hosts
- disease etiology
- virus epidemiology
- biosecurity/quarantine
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Related Special Issue
- Plant Virus Surveillance and Metagenomics in Viruses (14 articles)
