Advanced Algorithms for Small-Molecule Therapeutics Development

A special issue of Pharmaceutics (ISSN 1999-4923). This special issue belongs to the section "Pharmacokinetics and Pharmacodynamics".

Deadline for manuscript submissions: 30 April 2026 | Viewed by 1247

Special Issue Editors


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Guest Editor
Department of Pharmacology and Clinical Pharmacy, Faculty of Pharmacy, Carol Davila University of Medicine and Pharmacy, 020956 Bucharest, Romania
Interests: AI in drug design; small-molecule therapeutics; drug target prediction; pharmacoinformatics
Special Issues, Collections and Topics in MDPI journals

E-Mail Website
Guest Editor
Department of Pharmacology and Clinical Pharmacy, Faculty of Pharmacy, Carol Davila University of Medicine and Pharmacy, 020956 Bucharest, Romania
Interests: computational drug discovery; pharmacoinformatics; virtual screening

Special Issue Information

Dear Colleagues,

The advancement of small-molecule therapeutics is revolutionizing drug development and enhancing our understanding of pharmacokinetics and pharmacodynamics. As drug targets are becoming increasingly complex, the integration of computational methods into therapeutic development offers unprecedented precision in predicting drug behavior, efficacy, and safety. These approaches are pivotal in enhancing the development pipeline, improving therapeutic outcomes, and minimizing adverse effects.

This Special Issue seeks to delve into cutting-edge computational techniques that directly address challenges in drug development, with a specific emphasis on pharmacokinetics, pharmacodynamics, and related fields. By exploring the interface between computational algorithms and therapeutic design, we aim to highlight strategies that bridge the gap between molecular innovation and clinical application. Contributions should focus on advancing algorithmic approaches that optimize drug metabolism, distribution, and efficacy, and on addressing the complexities of multi-target and patient-specific therapies.

We invite submissions of original research articles and comprehensive reviews focused on the following areas:

  • Computational modeling of pharmacokinetics and pharmacodynamics;
  • Algorithms for predicting drug absorption, distribution, metabolism, and excretion (ADME);
  • Computational tools for toxicity prediction and safety profiling;
  • Structure-based optimization for enhanced therapeutic efficacy;
  • Multi-target and systems pharmacology approaches in drug development;
  • Integration of machine learning in refining drug design and dosing strategies.

This Special Issue aims to provide a platform for groundbreaking research that fosters interdisciplinary collaboration to advance the development of safer and more effective therapeutics.

Dr. Anca Zanfirescu
Dr. Corina Andrei
Guest Editors

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Keywords

  • small-molecule drug development
  • advanced computational algorithms
  • pharmacokinetics modeling
  • toxicity prediction algorithms
  • multi-target drug development
  • predictive modeling for drug efficacy
  • algorithm-driven pharmacology
  • computational drug development
  • drug safety profiling

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Published Papers (1 paper)

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Review

30 pages, 3041 KB  
Review
Machine Learning for Multi-Target Drug Discovery: Challenges and Opportunities in Systems Pharmacology
by Xueyuan Bi, Yangyang Wang, Jihan Wang and Cuicui Liu
Pharmaceutics 2025, 17(9), 1186; https://doi.org/10.3390/pharmaceutics17091186 - 12 Sep 2025
Viewed by 786
Abstract
Multi-target drug discovery has become an essential strategy for treating complex diseases involving multiple molecular pathways. Traditional single-target approaches often fall short in addressing the multifactorial nature of conditions such as cancer and neurodegenerative disorders. With the rise in large-scale biological data and [...] Read more.
Multi-target drug discovery has become an essential strategy for treating complex diseases involving multiple molecular pathways. Traditional single-target approaches often fall short in addressing the multifactorial nature of conditions such as cancer and neurodegenerative disorders. With the rise in large-scale biological data and algorithmic advances, machine learning (ML) has emerged as a powerful tool to accelerate and optimize multi-target drug development. This review presents a comprehensive overview of ML techniques, including advanced deep learning (DL) approaches like attention-based models, and highlights their application in multi-target prediction, from traditional supervised learning to modern graph-based and multi-task learning frameworks. We highlight real-world applications in oncology, central nervous system disorders, and drug repurposing, showcasing the translational potential of ML in systems pharmacology. Major challenges are discussed, such as data sparsity, lack of interpretability, limited generalizability, and integration into experimental workflows. We also address ethical and regulatory considerations surrounding model transparency, fairness, and reproducibility. Looking forward, we explore promising directions such as generative modeling, federated learning, and patient-specific therapy design. Together, these advances point toward a future of precision polypharmacology driven by biologically informed and interpretable ML models. This review aims to provide researchers and practitioners with a roadmap for leveraging ML in the development of safer and more effective multi-target therapeutics. Full article
(This article belongs to the Special Issue Advanced Algorithms for Small-Molecule Therapeutics Development)
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