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Computational Drug Design

This special issue belongs to the section “Medicinal Chemistry“.

Special Issue Information

Dear Colleagues,

Computational methods have become indispensable tools for the rational and efficient design of therapeutic agents targeting a wide range of diseases. This Special Issue will showcase recent advances and emerging methodologies in and successful applications of computational approaches in modern drug discovery. Topics of interest include, but are not limited to, structure-based and ligand-based drug design, AI-driven methodologies, quantum mechanical (QM) and QM/MM modeling, molecular docking, molecular dynamics simulations, free-energy calculations, and pharmacophore modeling.

In addition to studies on protein–ligand interactions, this Special Issue welcomes research addressing enzyme inhibition and induction, drug–drug interactions, and other mechanistic aspects of pharmacological activity. By integrating theoretical developments with practical applications, this Special Issue will provide a comprehensive overview of how computational strategies are transforming and accelerating the discovery of safe, selective, and effective drug candidates.

Prof. Dr. Hajime Hirao
Guest Editor

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 250 words) can be sent to the Editorial Office for assessment.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Molecules is an international peer-reviewed open access semimonthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2700 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • AI-based drug design
  • molecular docking
  • molecular dynamics simulations
  • QM/MM calculations
  • pharmacophore modeling
  • cheminformatics
  • ADMET prediction

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Molecules - ISSN 1420-3049