Advances in Plant and Microbial Metabolic Engineering

A special issue of Metabolites (ISSN 2218-1989). This special issue belongs to the section "Plant Metabolism".

Deadline for manuscript submissions: 31 December 2025 | Viewed by 361

Special Issue Editors


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Guest Editor
Department of Agriculture, School of Agricultural Sciences, and University Research Center, Institute of Agri-Food and Life Sciences, Hellenic Mediterranean University, 71410 Heraklion, Crete, Greece
Interests: metabolic engineering; plant biochemistry; microbial biotechnology; antioxidants; plant natural products
Special Issues, Collections and Topics in MDPI journals

E-Mail Website
Guest Editor
Department of Agriculture, School of Agricultural Sciences, and University Research Center, Institute of Agri-Food and Life Sciences, Hellenic Mediterranean University, 71410 Heraklion, Crete, Greece
Interests: metabolic engineering; plant molecular biology; microbial biotechnology; plant and microbial genomics; plant natural products
Special Issues, Collections and Topics in MDPI journals

Special Issue Information

Dear Colleagues,

Metabolic engineering, a scientific methodology “beyond natural evolution”, has been commercially used for about four decades in relation to plants and microbes. Nonetheless, emphasizing advancements in plant or microbial metabolic engineering is crucial, as innovative genome-scale editing techniques and systems biology methodologies are essential for identifying new emerging phenotypes and understanding plant network activities specifically. Metabolic engineering advanced the development of innovative genomic reconstructions aimed at the rational design of complex biological systems through the static or dynamic control of metabolic flow. Modern developments, research trends and ideas in metabolic engineering appear to constitute a dynamic methodological tool bridging molecular breeding and synthetic biology for ready-to-eat food and green energy derived from plants.

Metabolic engineering research invests in food security needs for an overpopulated planet by addressing how to further enhance plant fitness, boost productivity, increase resistance to pests and herbicides, and adapt to climatic or environmental extremities. Metabolic engineering methodologies have been used to avoid any technical issues associated with the growth of plants themselves, or even plant cell cultures, while considering societal acceptance, economic considerations, environmental impact, and long-term sustainability, which are also of critical importance for their successful implementation. Such approaches have proven effective in enhancing the output for a wide array of secondary metabolites, hence facilitating more sustainable and efficient production processes in microbial systems.

Microbial metabolic engineering, on the other hand, is rapidly gaining traction as a viable alternative to conventional chemical production methods for valuable pharmaceuticals and other bioactive compounds. Diverse approaches have been utilized to augment the microbial synthesis of secondary metabolites to meet commercial demand. Enhancements in yield can be achieved through innovative strategies and creative ways in microbial genetic manipulation, encompassing pathway optimization, systems biology approaches, protein engineering techniques, and advances in synthetic biology. These genetic modifications have proven effective in enhancing output from a wide array of secondary metabolite biosynthetic pathways, ultimately paving the way for more sustainable and efficient production processes in microbial systems.

This Special Issue will attract review papers and original research-oriented publications on all aspects of plant and microbial metabolic engineering, as well as biotechnology, agriculture, medicine, and environmental sustainability. Contributions focused on the integration of synthetic biology, OMICS and big data utilization, green biomanufacturing, the production of natural products, biopesticides or biostimulants, the engineering of microbial consortia, the engineering of climate resilience, the engineering of improved crop traits, the production of biopharmaceuticals, biofuel and biochemical production, and bioremediation are welcome.

Prof. Dr. Filippos Ververidis
Prof. Dr. Emmanouil Trantas
Guest Editors

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Metabolites is an international peer-reviewed open access monthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2700 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • plant metabolic engineering
  • primary and secondary metabolism
  • plant synthetic biology
  • natural products
  • molecular farming
  • molecular breeding
  • food security

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Published Papers (1 paper)

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Research

15 pages, 7513 KiB  
Article
Study on the Inhibitory Effects of Three Endophytic Bacillus Strains on Aspergillus flavus in Maize
by Siyu Ma, Min Li, Siqi Zhang, Yin Yang, Fengsha Zhu, Xingyu Li, Shahzad Munir, Pengfei He, Pengbo He, Yixin Wu, Yueqiu He and Ping Tang
Metabolites 2025, 15(4), 268; https://doi.org/10.3390/metabo15040268 - 11 Apr 2025
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Abstract
Background: Maize is easily contaminated by Aspergillus flavus, and the aflatoxin produced by A. flavus has been classified as a Group 1 carcinogen, for which there are currently no effective control measures. Biological control is regarded as an environmentally friendly and safe [...] Read more.
Background: Maize is easily contaminated by Aspergillus flavus, and the aflatoxin produced by A. flavus has been classified as a Group 1 carcinogen, for which there are currently no effective control measures. Biological control is regarded as an environmentally friendly and safe approach. Strains ZH179, ZH409, and ZH99 are three bacteria isolated from our laboratory that exhibit antagonistic effects against A. flavus. We conducted experiments to investigate their biocontrol efficacy. Results: The experimental results demonstrated that these three strains effectively inhibited A. flavus on plates and stored maize seeds. Identification revealed that ZH179 is Bacillus velezensis, while ZH409 and ZH99 are B. amyloliquefaciens. We also identified lipopeptide synthetase-related genes, including srfAA, srfAD, fenA, fenB, ituA, ituB, ituD, bmyA, bmyB, and bmyC, in these three strains. Furthermore, LC-MS analysis confirmed that these strains could produce lipopeptide compounds such as surfactin, fengycin, iturin, and bacillomycin. Using the Oxford cup method, we found that the lipopeptide compounds produced by these strains can inhibit the growth of A. flavus. Conclusion: These findings suggest that strains ZH179, ZH409, and ZH99 have good control effects on A. flavus during the storage of maize, primarily due to the lipopeptide compounds. This study provides a theoretical basis for using these three strains in the biological control of A. flavus. Full article
(This article belongs to the Special Issue Advances in Plant and Microbial Metabolic Engineering)
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