Basic Research and Application of Filamentous Fungi in Biotechnology

A special issue of Journal of Fungi (ISSN 2309-608X). This special issue belongs to the section "Fungi in Agriculture and Biotechnology".

Deadline for manuscript submissions: 31 October 2026 | Viewed by 937

Special Issue Editor


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Guest Editor
Department of Agrobiological Resources, Faculty of Agriculture, Meijo University, Shiogamaguchi, Tempaku, Nagoya 468-8502, Aichi, Japan
Interests: protein engineering; filamentous fungi; transcriptome; bioinformatics; molecular biology

Special Issue Information

Dear Colleagues,

Filamentous fungi represent a versatile and under-exploited biological resource in modern biotechnology, owing to their diverse morphologies, robust enzyme systems, and capacity for bioconversion of complex substrates. This Special Issue aims to bring together cutting-edge research on the physiology, genetics, and bioprocess engineering of filamentous fungal species, with a focus on their applications in biotransformation, enzyme production, and conversion of biomass or waste streams. Topics of interest include the discovery and optimisation of fungal enzyme systems (e.g., CAZymes, oxidoreductases), metabolic engineering and strain improvement, scale-up of filamentous-fungus-based fermentations, valorisation of agro-industrial residues, biotransformation of recalcitrant compounds, and integration of omics and synthetic biology approaches. By emphasising both fundamental mechanisms and translational applications, this Special Issue seeks to highlight how filamentous fungi can contribute to sustainable bioprocesses, circular bioeconomy concepts, and novel biotechnological solutions.

Contributions may come from molecular-microbiology, chemical-engineering, bioresource-technology, and allied disciplines, and we invite original research, reviews, and short communications that advance the knowledge and practice of filamentous fungal biotechnology.

Dr. Takaaki Kojima
Guest Editor

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Keywords

  • filamentous fungi
  • fungal biotechnology
  • enzyme production
  • bioconversion
  • biotransformation
  • biomass valorisation
  • CAZymes (carbohydrate-active enzymes)
  • metabolic engineering
  • fermentation process
  • circular bioeconomy

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Published Papers (1 paper)

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Research

15 pages, 14911 KB  
Article
Molecular Detection, Aggressiveness, and Vegetative Compatibility of Macrophomina phaseolina Isolates from Common Bean Fields in Sinaloa, Mexico
by Edgar Edel Rodríguez-Palafox, Juan Manuel Tovar-Pedraza, Hugo Beltrán-Peña, Elizabeth García-León, Moisés Camacho-Tapia, Santos Gerardo Leyva-Mir, Alma Rosa Solano-Báez and Guillermo Márquez-Licona
J. Fungi 2026, 12(3), 218; https://doi.org/10.3390/jof12030218 - 18 Mar 2026
Viewed by 661
Abstract
Charcoal rot of common bean, caused by Macrophomina, is one of the most economically important diseases worldwide. In Mexico, charcoal rot of bean has been associated exclusively with M. phaseolina; however, in recent years, new Macrophomina species affecting various crops have [...] Read more.
Charcoal rot of common bean, caused by Macrophomina, is one of the most economically important diseases worldwide. In Mexico, charcoal rot of bean has been associated exclusively with M. phaseolina; however, in recent years, new Macrophomina species affecting various crops have been described globally. Information on this pathogen in common bean in Mexico remains limited. Therefore, the objectives of this study were to characterize Macrophomina isolates obtained from bean fields in northern Sinaloa morphologically and molecularly using species-specific primers, and to determine their aggressiveness and vegetative compatibility groups (VCGs). During the 2020–2021 growing season, 50 Macrophomina isolates were obtained from common bean tissues exhibiting charcoal rot symptoms collected from 12 fields in the municipalities of Ahome and Guasave, Sinaloa, Mexico. Molecular analysis using species-specific primers for three Macrophomina species (M. phaseolina, M. pseudophaseolina, and M. euphorbiicola) identified all 50 isolates as M. phaseolina. Pathogenicity tests indicated that the M. phaseolina isolates differed in aggressiveness toward common bean plants. Mycelial compatibility assays revealed at least seven vegetative compatibility groups among M. phaseolina isolates distributed across northern Sinaloa. To our knowledge, this is the first study to provide phenotypic characterization, aggressiveness assessment, vegetative compatibility grouping, and species-specific primer-based identification of M. phaseolina isolates from common bean fields in Sinaloa, Mexico. Full article
(This article belongs to the Special Issue Basic Research and Application of Filamentous Fungi in Biotechnology)
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