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Bacterial Infections: Unraveling Pathogenesis, Resistance, and Therapeutic Frontiers

A special issue of International Journal of Molecular Sciences (ISSN 1422-0067). This special issue belongs to the section "Molecular Microbiology".

Deadline for manuscript submissions: 31 December 2025 | Viewed by 358

Special Issue Editor


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Guest Editor
Department of Biomolecular Sciences, Weizmann Institute of Science, Rehovot 7610001, Israel
Interests: phylogenetics; evolution; microbiology; bioinformatics; computational biology; genomics; clinical research

Special Issue Information

Dear Colleagues,

Bacterial infections represent one of humanity's most persistent health challenges, now established as the second leading cause of death globally. The landmark 2022 GRAM Project study revealed that 33 bacterial pathogens were associated with 7.7 million deaths in 2019—approximately one in eight global deaths. The molecular basis behind the virulence and pathogenicity of these bacteria urgently needs to be investigated on the genomic, transcriptomic, and proteomic levels.

Recent projections show that antimicrobial resistance (AMR) mechanisms are expected to lead to 39 million deaths between 2025 and 2050. MRSA deaths have more than doubled since 1990, with resistance genes spreading through horizontal gene transfer and adaptive mutations. Similarly, carbapenem resistance among Gram-negative bacteria continues to evolve through complex molecular pathways.

Intervention strategies based on molecular insights—from CRISPR-based diagnostics to bacteriophage engineering and novel small-molecule inhibitors targeting resistance mechanisms—show promise for averting millions of deaths. However, only through detailed molecular understanding can we develop targeted therapeutics to address what has become one of our most pressing global health challenges.

This Special Issue of IJMS will exclusively feature research with robust molecular data exploring bacterial resistance genomics, host–pathogen interactions, molecular epidemiology, and novel antimicrobial targets. As a molecular-focused journal, IJMS requires submissions to include comprehensive molecular analyses using techniques such as whole-genome sequencing, transcriptomics, proteomics, or structural biology.

Dr. Jagoda Jablonska
Guest Editor

Manuscript Submission Information

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Keywords

  • antimicrobial resistance
  • host–pathogen interactions
  • bacterial molecular pathogenesis
  • therapeutic target discovery

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Published Papers (1 paper)

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Research

21 pages, 3182 KB  
Article
Comparative Analyses Suggest Genome Stability and Plasticity in Stenotrophomonas maltophilia
by Danny Khar Chen Sum, Yee Yee Chong and Joon Liang Tan
Int. J. Mol. Sci. 2025, 26(21), 10477; https://doi.org/10.3390/ijms262110477 - 28 Oct 2025
Viewed by 199
Abstract
Stenotrophomonas maltophilia (S. maltophilia) is a multidrug-resistant opportunistic pathogen. There are an increasing number of case reports on S. maltophilia infections in recent years, and the species is becoming a public health concern. Many studies have focused on profiling and pangenome [...] Read more.
Stenotrophomonas maltophilia (S. maltophilia) is a multidrug-resistant opportunistic pathogen. There are an increasing number of case reports on S. maltophilia infections in recent years, and the species is becoming a public health concern. Many studies have focused on profiling and pangenome of the species, particularly on their antibiotic resistance and virulence genes. However, there is a lack of studies on mobile genetic elements (MGEs), a subset of pangenome that significantly contributes to the diversity, stability, and plasticity of a population. In this study, 20 genomes of S. maltophilia were downloaded from the NCBI Genome database. The genomes were subjected to profiling of MGEs, their impact on the population structures, and the evaluation of evolutionary trends of the core genomes. The cataloguing of MGEs indicated active horizontal gene transfer events in the S. maltophilia’s population. Multiple virulence and drug resistance genes were predicted within and outside of the MGEs. We observed multiple chromosomal rearrangements in the genomes, most likely caused by MGEs, affecting up to approximately 50% of a single genome sequence. A high number of linkage disequilibrium sites were also predicted in the core genomes. This study provides insights into stability in the core and plasticity in the accessory regions in the S. maltophilia population. Full article
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