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Redox Enzymes of Bacteria and Parasites as Potential Drug Targets

A special issue of International Journal of Molecular Sciences (ISSN 1422-0067). This special issue belongs to the section "Biochemistry".

Deadline for manuscript submissions: 20 June 2024 | Viewed by 480

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Special Issue Information

Dear Colleagues,

The constant emergence of drug-resistant strains of bacteria or parasites dictates the need to update the arsenal of antibacterial and antiparasitic agents and/or to repurpose the already known ones, for example, antitumor or antiviral drugs. On the other hand, a considerable body of empirical data has been accumulated on new potentially interesting antiparasitic and antibacterial agents, but these are insufficiently related to studies of their molecular mechanisms of action and/or identification of targets. The scope of this Special Issue is to try to integrate these studies in a specific field, emphasizing the role of bacterial or parasitic redox enzymes as potential drug targets and revealing the molecular mechanisms of their interactions. Of particular interest are bacterial or parasitic enzymes that are not found in or differ from their counterparts in mammalian organisms, such as electron transport chains of the bacterial plasma membrane and parasite mitochondria and redox enzymes involved in the synthesis of membrane or cell wall components, bacterial dioxygenases, and nitroreductases, the latter being important candidates for gene-directed prodrug therapy of cancer. Another important group is the antioxidant defence and/or thiol metabolism enzymes in bacteria and parasites.

This Special Issue targets research on a molecular to cellular level, including mechanisms of enzymatic reactions, substrate/inhibitor recognition, structure–function relationships, and therapeutic application, utilizing spectroscopic, kinetic, and structural analyses, computational science, and genomics, proteomics, and metabolomics approaches. We believe that this Special Issue, “Redox Enzymes of Bacteria and Parasites as Potential Drug Targets”, will help to highlight the most recent advances in this field.

Prof. Dr. Narimantas K. Cenas
Guest Editor

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Keywords

  • bacteria and parasite electron transport chains
  • membrane and cell wall component synthesis
  • dioxygenases
  • nitroreductases
  • antibacterial and antiparasitic agents

Published Papers (1 paper)

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Research

17 pages, 4576 KiB  
Article
The Catalysis Mechanism of E. coli Nitroreductase A, a Candidate for Gene-Directed Prodrug Therapy: Potentiometric and Substrate Specificity Studies
by Benjaminas Valiauga, Gintautas Bagdžiūnas, Abigail V. Sharrock, David F. Ackerley and Narimantas Čėnas
Int. J. Mol. Sci. 2024, 25(8), 4413; https://doi.org/10.3390/ijms25084413 - 17 Apr 2024
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Abstract
E. coli nitroreductase A (NfsA) is a candidate for gene-directed prodrug cancer therapy using bioreductively activated nitroaromatic compounds (ArNO2). In this work, we determined the standard redox potential of FMN of NfsA to be −215 ± 5 mV at pH 7.0. [...] Read more.
E. coli nitroreductase A (NfsA) is a candidate for gene-directed prodrug cancer therapy using bioreductively activated nitroaromatic compounds (ArNO2). In this work, we determined the standard redox potential of FMN of NfsA to be −215 ± 5 mV at pH 7.0. FMN semiquinone was not formed during 5-deazaflavin-sensitized NfsA photoreduction. This determines the two-electron character of the reduction of ArNO2 and quinones (Q). In parallel, we characterized the oxidant specificity of NfsA with an emphasis on its structure. Except for negative outliers nitracrine and SN-36506, the reactivity of ArNO2 increases with their electron affinity (single-electron reduction potential, E17) and is unaffected by their lipophilicity and Van der Waals volume up to 386 Å. The reactivity of quinoidal oxidants is not clearly dependent on E17, but 2-hydroxy-1,4-naphthoquinones were identified as positive outliers and a number of compounds with diverse structures as negative outliers. 2-Hydroxy-1,4-naphthoquinones are characterized by the most positive reaction activation entropy and the negative outlier tetramethyl-1,4-benzoquinone by the most negative. Computer modelling data showed that the formation of H bonds with Arg15, Arg133, and Ser40, plays a major role in the binding of oxidants to reduced NfsA, while the role of the π–π interaction of their aromatic structures is less significant. Typically, the calculated hydride-transfer distances during ArNO2 reduction are smallwer than for Q. This explains the lower reactivity of quinones. Another factor that slows down the reduction is the presence of positively charged aliphatic substituents. Full article
(This article belongs to the Special Issue Redox Enzymes of Bacteria and Parasites as Potential Drug Targets)
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