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Advanced in In Silico Methods for Rational Drug Design and Predictive Toxicology

A special issue of International Journal of Molecular Sciences (ISSN 1422-0067). This special issue belongs to the section "Molecular Informatics".

Deadline for manuscript submissions: 31 December 2025 | Viewed by 39

Special Issue Editor


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Guest Editor
Department of Biotechnology, College of Life and Applied Sciences, Yeungnam University, Gyeongsan, Gyeongbuk 38541, Republic of Korea
Interests: drug discovery; in silico; molecular modeling; computational toxicology; molecular dynamic; system biology; molecular docking

Special Issue Information

Dear Colleagues,

This Special Issue aims to highlight recent breakthroughs and emerging trends in computational approaches that accelerate rational drug design and enhance the predictive accuracy of toxicological assessments. In silico methods have transformed the early stages of drug discovery by offering cost-effective and time-saving alternatives to traditional experimental techniques. From virtual screening, molecular docking, and pharmacophore modeling to machine learning-driven QSAR models and systems biology approaches, these computational techniques are vital for identifying potential drug candidates and anticipating adverse effects early in development.

We welcome the submission of original research articles, reviews, and methodological studies that explore innovative algorithms, integrated pipelines, or hybrid approaches that combine bioinformatics, cheminformatics, and artificial intelligence. The scope of this Special Issue includes, but is not limited to, the following topics:

  • Structure-based and ligand-based drug design strategies;
  • Molecular docking, dynamics, and free energy calculations;
  • Virtual screening and pharmacophore modeling;
  • AI and machine learning applications in drug discovery;
  • Predictive toxicology and computational ADMET profiling;
  • Cheminformatics tools and compound library optimization;
  • QSAR modeling and model validation techniques;
  • Network pharmacology and systems-level drug–target interaction mapping;
  • Omics-integrated approaches for target identification and drug repurposing;
  • Biomarker discovery using computational pipelines;
  • In silico prediction of off-target effects and drug safety;
  • Case studies combining experimental and computational validation;
  • Multi-target drug design and polypharmacology modeling;
  • Computational design of antimicrobial, antiviral, or anticancer agents;
  • Web tools, databases, and software development for predictive toxicology and drug discovery.

This Special Issue welcomes articles that present both theoretical advancements and practical applications across therapeutic areas, aiming to provide a comprehensive overview of how in silico techniques are shaping the future of drug discovery and safety evaluation.

Dr. Gnanendra Shanmugam
Guest Editor

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. International Journal of Molecular Sciences is an international peer-reviewed open access semimonthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. There is an Article Processing Charge (APC) for publication in this open access journal. For details about the APC please see here. Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • rational drug design
  • predictive toxicology
  • molecular modeling
  • AI in drug discovery
  • QSAR
  • molecular docking
  • ADMET

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Published Papers

This special issue is now open for submission.
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