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New Insights into Proteomics and Applications in Molecular Diagnostics and Systems Biology

A special issue of International Journal of Molecular Sciences (ISSN 1422-0067). This special issue belongs to the section "Molecular Informatics".

Deadline for manuscript submissions: closed (30 April 2024) | Viewed by 1200

Special Issue Editor


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Guest Editor
Plateforme d’Ingénierie Cellulaire & Analyses des Protéines ICAP, FR CNRS 3085 ICP, Université de Picardie Jules Verne, 80039 Amiens, France
Interests: tandem mass spectrometry; quantitative proteomics; shotgun proteomics; functional proteomics; systems biology; small molecules; biomarker discovery; data analysis

Special Issue Information

Dear Colleagues,

In recent years, proteomics has revolutionizing our understanding of cellular processes, disease mechanisms and drug development. Some of the recent advances in proteomics approaches have propelled this field to the forefront of modern biology and medicine. Proteomics plays an essential role in deciphering the complex molecular machinery of living organisms. It explores the identity, structure, function and interactions of proteins, shedding light on their crucial roles in cellular functions and signaling pathways. Recent technological advancements include those in mass spectrometry, such as isobaric stable isotope labelling. The multiplexing capability of these reagents enables achieving deep proteome coverage for multiple samples. These innovations have paved the way for the discovery of novel biomarkers for diseases, providing valuable insights into early diagnosis and personalized medicine.

Furthermore, proteomics has been instrumental in elucidating the mechanisms underlying various diseases, including cancer, neurodegenerative disorders and infectious diseases. By identifying specific protein alterations associated with these conditions, researchers are now better equipped to develop targeted therapies and therapeutic interventions. Additionally, proteomics has fostered the emergence of systems biology, allowing scientists to integrate proteomic data with genomics, transcriptomics and metabolomics, creating a holistic view of biological systems. The application of proteogenomics helps elucidate the complex landscape of cancer mutations and potential therapeutic targets. Moreover, single-cell proteomics has also emerged as a cutting-edge approach, enabling the study of heterogeneity within cell populations and shedding light on developmental processes and disease pathogenesis.

In conclusion, proteomics has undergone transformative developments in recent years, empowering researchers with the tools and knowledge needed to unravel the complexities of life at the molecular level. As we delve into the remarkable progress and potential of proteomics, we gain a deeper appreciation for its significance in driving advancements in medicine, diagnostics and our overall comprehension of the biological world.

Dr. Paulo Marcelo
Guest Editor

Manuscript Submission Information

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Keywords

  • mass spectrometry
  • liquid chromatography
  • tandem mass spectrometry (MS/MS)
  • quantitative proteomics
  • shotgun proteomics
  • label-free quantification
  • post-translational modifications
  • protein–protein interactions
  • proteogenomics
  • single-cell proteomics
  • data analysis
  • bioinformatics
  • functional proteomics
  • phosphoproteomics
  • glycoproteomics
  • biomarker discovery
  • top–down proteomics
  • clinical applications
  • disease proteomics
  • systems biology

Published Papers (1 paper)

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Research

19 pages, 3169 KiB  
Article
The Bee Gut Microbiota: Bridging Infective Agents Potential in the One Health Context
by Bruno Tilocca, Viviana Greco, Cristian Piras, Carlotta Ceniti, Mariachiara Paonessa, Vincenzo Musella, Roberto Bava, Ernesto Palma, Valeria Maria Morittu, Anna Antonella Spina, Fabio Castagna, Andrea Urbani, Domenico Britti and Paola Roncada
Int. J. Mol. Sci. 2024, 25(7), 3739; https://doi.org/10.3390/ijms25073739 - 27 Mar 2024
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Abstract
The bee gut microbiota plays an important role in the services the bees pay to the environment, humans and animals. Alongside, gut-associated microorganisms are vehiculated between apparently remote habitats, promoting microbial heterogeneity of the visited microcosms and the transfer of the microbial genetic [...] Read more.
The bee gut microbiota plays an important role in the services the bees pay to the environment, humans and animals. Alongside, gut-associated microorganisms are vehiculated between apparently remote habitats, promoting microbial heterogeneity of the visited microcosms and the transfer of the microbial genetic elements. To date, no metaproteomics studies dealing with the functional bee microbiota are available. Here, we employ a metaproteomics approach to explore a fraction of the bacterial, fungal, and unicellular parasites inhabiting the bee gut. The bacterial community portrays a dynamic composition, accounting for specimens of human and animal concern. Their functional features highlight the vehiculation of virulence and antimicrobial resistance traits. The fungal and unicellular parasite fractions include environment- and animal-related specimens, whose metabolic activities support the spatial spreading of functional features. Host proteome depicts the major bee physiological activities, supporting the metaproteomics strategy for the simultaneous study of multiple microbial specimens and their host-crosstalks. Altogether, the present study provides a better definition of the structure and function of the bee gut microbiota, highlighting its impact in a variety of strategies aimed at improving/overcoming several current hot topic issues such as antimicrobial resistance, environmental pollution and the promotion of environmental health. Full article
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