New Sights of Deep Learning in Bioengineering: Updates and Future Directions

This study aimed to analyze the associations between periodontitis and metabolic syndrome (MetS) components and related conditions while controlling for sociodemographics, health behaviors, and caries levels among young and middle-aged adults. We analyzed data from the Dental, Oral, and Medical Epidemiological (DOME) record-based cross-sectional study that combines comprehensive sociodemographic, medical, and dental databases of a nationally representative sample of military personnel. The research consisted of 57,496 records of patients, and the prevalence of periodontitis was 9.79% (5630/57,496). The following parameters retained a significant positive association with subsequent periodontitis multivariate analysis (from the highest to the lowest OR (odds ratio)): brushing teeth (OR = 2.985 (2.739–3.257)), obstructive sleep apnea (OSA) (OR = 2.188 (1.545–3.105)), cariogenic diet consumption (OR = 1.652 (1.536–1.776)), non-alcoholic fatty liver disease (NAFLD) (OR = 1.483 (1.171–1.879)), smoking (OR = 1.176 (1.047–1.322)), and age (OR = 1.040 (1.035–1.046)). The following parameters retained a significant negative association (protective effect) with periodontitis in the multivariate analysis (from the highest to the lowest OR): the mean number of decayed teeth (OR = 0.980 (0.970–0.991)); North America as the birth country compared to native Israelis (OR = 0.775 (0.608–0.988)); urban non-Jewish (OR = 0.442 (0.280–0.698)); and urban Jewish (OR = 0.395 (0.251–0.620)) compared to the rural locality of residence. Feature importance analysis using the eXtreme Gradient Boosting (XGBoost) machine learning algorithm with periodontitis as the target variable ranked obesity, OSA, and NAFLD as the most important systemic conditions in the model. We identified a profile of the “patient vulnerable to periodontitis” characterized by older age, rural residency, smoking, brushing teeth, cariogenic diet, comorbidities of obesity, OSA and NAFLD, and fewer untreated decayed teeth. North American-born individuals had a lower prevalence of periodontitis than native Israelis. This study emphasizes the holistic view of the MetS cluster and explores less-investigated MetS-related conditions in the context of periodontitis. A comprehensive assessment of disease risk factors is crucial to target high-risk populations for periodontitis and MetS. Full article

The increasing prevalence of machine learning (ML) and automated machine learning (AutoML) applications across diverse industries necessitates rigorous comparative evaluations of their predictive accuracies under various computational environments. The purpose of this research was to compare and analyze the predictive accuracy of several machine learning algorithms, including RNNs, LSTMs, GRUs, XGBoost, and LightGBM, when implemented on different platforms such as Google Colab Pro, AWS SageMaker, GCP Vertex AI, and MS Azure. The predictive performance of each model within its respective environment was assessed using performance metrics such as accuracy, precision, recall, F1-score, and log loss. All algorithms were trained on the same dataset and implemented on their specified platforms to ensure consistent comparisons. The dataset used in this study comprised fitness images, encompassing 41 exercise types and totaling 6 million samples. These images were acquired from AI-hub, and joint coordinate values (x, y, z) were extracted utilizing the Mediapipe library. The extracted values were then stored in a CSV format. Among the ML algorithms, LSTM demonstrated the highest performance, achieving an accuracy of 73.75%, precision of 74.55%, recall of 73.68%, F1-score of 73.11%, and a log loss of 0.71. Conversely, among the AutoML algorithms, XGBoost performed exceptionally well on AWS SageMaker, boasting an accuracy of 99.6%, precision of 99.8%, recall of 99.2%, F1-score of 99.5%, and a log loss of 0.014. On the other hand, LightGBM exhibited the poorest performance on MS Azure, achieving an accuracy of 84.2%, precision of 82.2%, recall of 81.8%, F1-score of 81.5%, and a log loss of 1.176. The unnamed algorithm implemented on GCP Vertex AI showcased relatively favorable results, with an accuracy of 89.9%, precision of 94.2%, recall of 88.4%, F1-score of 91.2%, and a log loss of 0.268. Despite LightGBM’s lackluster performance on MS Azure, the GRU implemented in Google Colab Pro displayed encouraging results, yielding an accuracy of 88.2%, precision of 88.5%, recall of 88.1%, F1-score of 88.4%, and a log loss of 0.44. Overall, this study revealed significant variations in performance across different algorithms and platforms. Particularly, AWS SageMaker’s implementation of XGBoost outperformed other configurations, highlighting the importance of carefully considering the choice of algorithm and computational environment in predictive tasks. To gain a comprehensive understanding of the factors contributing to these performance discrepancies, further investigations are recommended. Full article

Hepatitis C is a liver infection caused by the hepatitis C virus (HCV). Due to the late onset of symptoms, early diagnosis is difficult in this disease. Efficient prediction can save patients before permeant liver damage. The main objective of this study is to employ various machine learning techniques to predict this disease based on common and affordable blood test data to diagnose and treat patients in the early stages. In this study, six machine learning algorithms (Support Vector Machine (SVM), K-nearest Neighbors (KNN), Logistic Regression, decision tree, extreme gradient boosting (XGBoost), artificial neural networks (ANN)) were utilized on two datasets. The performances of these techniques were compared in terms of confusion matrix, precision, recall, F1 score, accuracy, receiver operating characteristics (ROC), and the area under the curve (AUC) to identify a method that is appropriate for predicting this disease. The analysis, on NHANES and UCI datasets, revealed that SVM and XGBoost (with the highest accuracy and AUC among the test models, >80%) can be effective tools for medical professionals using routine and affordable blood test data to predict hepatitis C. Full article

The human gastrointestinal (GI) tract is an important part of the body. According to World Health Organization (WHO) research, GI tract infections kill 1.8 million people each year. In the year 2019, almost 5 million individuals were detected with gastrointestinal disease. Radiation therapy has the potential to improve cure rates in GI cancer patients. Radiation oncologists direct X-ray beams at the tumour while avoiding the stomach and intestines. The current objective is to direct the X-ray beam toward the malignancy while avoiding the stomach and intestines in order to improve dose delivery to the tumour. This study offered a technique for segmenting GI tract organs (small bowel, big intestine, and stomach) to assist radio oncologists to treat cancer patients more quickly and accurately. The suggested model is a U-Net model designed from scratch and used for the segmentation of a small size of images to extract the local features more efficiently. Furthermore, in the proposed model, six transfer learning models were employed as the backbone of the U-Net topology. The six transfer learning models used are Inception V3, SeResNet50, VGG19, DenseNet121, InceptionResNetV2, and EfficientNet B0. The suggested model was analysed with model loss, dice coefficient, and IoU. The results specify that the suggested model outperforms all transfer learning models, with performance parameter values as 0.122 model loss, 0.8854 dice coefficient, and 0.8819 IoU. Full article