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Physchem, Volume 5, Issue 2 (June 2025) – 3 articles

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18 pages, 3993 KiB  
Review
A Central Role for Troponin C Amino-Terminal α-Helix in Vertebrate Thin Filament Ca2+-Activation
by Yun Shi, Lauren A. Blackwell, Ryan K. Schroy, B. Max Cleland, Cristina M. Risi, Michelle S. Parvatiyar, Jose R. Pinto, Vitold E. Galkin and P. Bryant Chase
Physchem 2025, 5(2), 16; https://doi.org/10.3390/physchem5020016 - 14 Apr 2025
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Abstract
Troponin C (TnC) is the Ca2+-sensing subunit of troponin that is responsible for activating thin filaments in striated muscle, and, in turn, for regulating the systolic and diastolic contractile function of cardiac muscle. The secondary structure of vertebrate TnC is mainly [...] Read more.
Troponin C (TnC) is the Ca2+-sensing subunit of troponin that is responsible for activating thin filaments in striated muscle, and, in turn, for regulating the systolic and diastolic contractile function of cardiac muscle. The secondary structure of vertebrate TnC is mainly composed of α-helices, with nine helices named sequentially, starting from the amino terminus, from N to A–H. The N-helix is a 12-residue-long α-helix located at the extreme amino terminus of the protein and is the only helical structure that does not participate in forming Ca2+-binding EF-hands. Evolutionarily, the N-helix is found only in TnC from mammalian species and most other vertebrates and is not present in other Ca2+-binding protein members of the calmodulin (CaM) family. Furthermore, the primary sequence of the N-helix differs between the genetic isoforms of the fast skeletal TnC (sTnC) and cardiac/slow skeletal TnC (cTnC). The 3D location of the N-helix within the troponin complex is also distinct between skeletal and cardiac troponin. Physical chemistry and biophysical studies centered on the sTnC N-helix demonstrate that it is crucial to the thermal stability and Ca2+ sensitivity of thin filament-regulated MgATPase activity in solution and to isometric force generation in the sarcomere. Comparable studies on the cTnC N-helix have not yet been performed despite the identification of cardiomyopathy-associated genetic variants that affect the residues of cTnC’s N-helix. Here, we review the current status of the research on TnC’s N-helix and establish future directions to elucidate its functional significance. Full article
(This article belongs to the Section Biophysical Chemistry)
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24 pages, 431 KiB  
Article
Enhancing Predictive Accuracy Under Data Scarcity: Modeling Molecular Interactions to Describe Sealing Material Compatibility with Bio-Hybrid Fuels
by Lukas Boden, Faras Brumand-Poor, Linda Pleninger and Katharina Schmitz
Physchem 2025, 5(2), 15; https://doi.org/10.3390/physchem5020015 - 8 Apr 2025
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Abstract
Bio-hybrid fuels, chemically derived from sustainable raw materials and green energies, offer significant potential to reduce carbon dioxide emissions in the transport sector. However, when these fuels are used as drop-in replacements in internal combustion engines, material compatibility with common sealing materials is [...] Read more.
Bio-hybrid fuels, chemically derived from sustainable raw materials and green energies, offer significant potential to reduce carbon dioxide emissions in the transport sector. However, when these fuels are used as drop-in replacements in internal combustion engines, material compatibility with common sealing materials is not always given. Within the cluster of excellence, “The Fuel Science Center (FSC)” at RWTH Aachen, experimental immersion tests were conducted on a limited set of fuel and sealing material combinations. Given the extensive range of possible fuel and sealing combinations, a data-based machine learning prediction framework was developed and validated to pre-select promising fuel candidates. Due to the limited number of samples, preliminary results indicate a need to expand the database. Since experimental investigations are time-consuming and costly, this work explores faster physics-motivated data generation approaches by modeling molecular interactions between fuel and sealing materials. Two modeling scales are employed. One calculates the intermolecular distance using density functional theory. The other uses Hansen solubility parameters, representing an abstract modeling of intermolecular forces. Both approaches are compared, and their limitations are assessed. Including the generated data in the prediction framework improves its accuracy. Full article
(This article belongs to the Section Theoretical and Computational Chemistry)
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43 pages, 10058 KiB  
Review
Polystyrene–Carbon Nanotube Composites: Interaction Mechanisms, Preparation Methods, Structure, and Rheological Properties—A Review
by Saba Yaqoob, Zulfiqar Ali, Sajjad Ali and Alberto D’Amore
Physchem 2025, 5(2), 14; https://doi.org/10.3390/physchem5020014 - 3 Apr 2025
Viewed by 229
Abstract
This review focuses on the rheological behavior of polystyrene (PS) composites reinforced with carbon nanotubes (CNTs), providing an in-depth analysis of how CNT incorporation affects the viscosity, elasticity, and flow properties of these materials. The review covers fundamental aspects of PS and CNT [...] Read more.
This review focuses on the rheological behavior of polystyrene (PS) composites reinforced with carbon nanotubes (CNTs), providing an in-depth analysis of how CNT incorporation affects the viscosity, elasticity, and flow properties of these materials. The review covers fundamental aspects of PS and CNT structures, emphasizing their influence on the composite’s rheological properties. Key interaction mechanisms, including van der Waals forces and covalent bonding, are discussed for their role in determining material behavior. Various preparation methods, such as melt mixing, solution mixing, and in situ polymerization, are evaluated based on their impact on CNT dispersion and rheological performance. The study examines critical rheological parameters such as relative and complex viscosity, shear thinning, and elasticity, supported by theoretical models and experimental findings. The review also identifies major challenges, such as achieving uniform CNT dispersion and addressing processing limitations, while offering insights into future research directions aimed at improving the rheological performance and scalability of PS/CNT composites for advanced applications. Full article
(This article belongs to the Section Nanoscience)
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