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Non-Coding RNA, Volume 6, Issue 4

2020 December - 10 articles

Cover Story: Long non-coding RNAs (lncRNAs) are defined as non-protein coding transcripts with a minimal length of 200 nucleotides. They are involved in physiological processes such as cell differentiation, as well as in pathophysiological processes such as cancer. There are numerous examples of deregulated lncRNAs in various types of tumors, thereby contributing to different hallmarks of cancer, such as angiogenesis. To exceed a tumor size with a diameter of more than 2 mm, the formation of blood vessels is vital to supply the tumor with sufficient nutrients and oxygen. Recently, studies have reported that lncRNAs regulate tumor angiogenesis by directly or indirectly influencing numerous pathways by binding proteins, interacting with other RNA transcripts or modulating the tumor microenvironment. View this paper
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Articles (10)

  • Communication
  • Open Access
7 Citations
5,301 Views
8 Pages

Human Cytomegalovirus-Encoded microRNAs Can Be Found in Saliva Samples from Renal Transplant Recipients

  • Shelley Waters,
  • Silvia Lee,
  • Kylie Munyard,
  • Ashley Irish,
  • Patricia Price and
  • Bing H. Wang

18 December 2020

Human cytomegalovirus (HCMV) infections are common following renal transplantation and may have long-lasting effects. HCMV can be measured directly by viral DNA or indirectly via host immune responses. HCMV-encoded microRNA (miRNA) may alter the path...

(This article belongs to the Section Clinical Applications of Non-Coding RNA)
  • Review
  • Open Access
54 Citations
18,944 Views
25 Pages

The lncRNA Toolkit: Databases and In Silico Tools for lncRNA Analysis

  • Holly R. Pinkney,
  • Brandon M. Wright and
  • Sarah D. Diermeier

16 December 2020

Long non-coding RNAs (lncRNAs) are a rapidly expanding field of research, with many new transcripts identified each year. However, only a small subset of lncRNAs has been characterized functionally thus far. To aid investigating the mechanisms of act...

(This article belongs to the Section Long Non-Coding RNA)
  • Article
  • Open Access
16 Citations
5,682 Views
13 Pages

Non-Coding RNAs as Prognostic Biomarkers: A miRNA Signature Specific for Aggressive Early-Stage Lung Adenocarcinomas

  • Elisa Dama,
  • Valentina Melocchi,
  • Francesco Mazzarelli,
  • Tommaso Colangelo,
  • Roberto Cuttano,
  • Leonarda Di Candia,
  • Gian Maria Ferretti,
  • Marco Taurchini,
  • Paolo Graziano and
  • Fabrizio Bianchi

15 December 2020

Lung cancer burden can be reduced by adopting primary and secondary prevention strategies such as anti-smoking campaigns and low-dose CT screening for high risk subjects (aged >50 and smokers >30 packs/year). Recent CT screening trials demonstr...

(This article belongs to the Collection Feature Papers in Non-Coding RNA)
  • Review
  • Open Access
22 Citations
6,657 Views
23 Pages

Deep Learning in LncRNAome: Contribution, Challenges, and Perspectives

  • Tanvir Alam,
  • Hamada R. H. Al-Absi and
  • Sebastian Schmeier

30 November 2020

Long non-coding RNAs (lncRNA), the pervasively transcribed part of the mammalian genome, have played a significant role in changing our protein-centric view of genomes. The abundance of lncRNAs and their diverse roles across cell types have opened nu...

(This article belongs to the Section Long Non-Coding RNA)
  • Article
  • Open Access
5 Citations
5,530 Views
11 Pages

LINC00473 as an Immediate Early Gene under the Control of the EGR1 Transcription Factor

  • Vincenza Aliperti,
  • Emilia Vitale,
  • Francesco Aniello and
  • Aldo Donizetti

12 November 2020

Immediate early genes play an essential role in cellular responses to different stimuli. Many of them are transcription factors that regulate the secondary response gene expression. Non-coding RNAs may also be involved in this regulatory cascade. In...

(This article belongs to the Section Long Non-Coding RNA)
  • Review
  • Open Access
22 Citations
10,142 Views
18 Pages

Seeing Is Believing: Visualizing Circular RNAs

  • Pruthvi Raj Bejugam,
  • Aniruddha Das and
  • Amaresh Chandra Panda

11 November 2020

Advancement in the RNA sequencing techniques has discovered hundreds of thousands of circular RNAs (circRNAs) in humans. However, the physiological function of most of the identified circRNAs remains unexplored. Recent studies have established that s...

(This article belongs to the Section Computational Biology)
  • Review
  • Open Access
33 Citations
8,558 Views
14 Pages

While the important functions of long noncoding RNAs (lncRNAs) in nuclear organization are well documented, their orchestrating and architectural roles in the cytoplasmic environment have long been underestimated. However, recently developed fraction...

(This article belongs to the Collection Feature Papers in Non-Coding RNA)
  • Feature Paper
  • Review
  • Open Access
49 Citations
8,170 Views
13 Pages

Non-coding RNA were previously thought to be biologically useless molecules arising from simple transcriptional noise. These are now known to be an integral part of cellular biology and pathology. The wide range of RNA molecules have a diverse range...

(This article belongs to the Section Clinical Applications of Non-Coding RNA)
  • Review
  • Open Access
47 Citations
9,710 Views
25 Pages

Involvement of Long Non-Coding RNAs (lncRNAs) in Tumor Angiogenesis

  • Julia Teppan,
  • Dominik A. Barth,
  • Felix Prinz,
  • Katharina Jonas,
  • Martin Pichler and
  • Christiane Klec

25 September 2020

Long non-coding RNAs (lncRNAs) are defined as non-protein coding transcripts with a minimal length of 200 nucleotides. They are involved in various biological processes such as cell differentiation, apoptosis, as well as in pathophysiological process...

(This article belongs to the Collection Feature Papers in Non-Coding RNA)
  • Article
  • Open Access
76 Citations
10,137 Views
18 Pages

FuncPEP: A Database of Functional Peptides Encoded by Non-Coding RNAs

  • Mihnea P. Dragomir,
  • Ganiraju C. Manyam,
  • Leonie Florence Ott,
  • Léa Berland,
  • Erik Knutsen,
  • Cristina Ivan,
  • Leonard Lipovich,
  • Bradley M. Broom and
  • George A. Calin

23 September 2020

Non-coding RNAs (ncRNAs) are essential players in many cellular processes, from normal development to oncogenic transformation. Initially, ncRNAs were defined as transcripts that lacked an open reading frame (ORF). However, multiple lines of evidence...

(This article belongs to the Section Computational Biology)
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Non-Coding RNA - ISSN 2311-553X