Discovery of the High-Affinity Aptamer for Candidalysin Using a Dual-Mode Colorimetric–SERS Platform
Abstract
1. Introduction
2. Materials and Methods
2.1. Materials and Reagents
2.2. Equipment
2.3. In Vitro Selection of ssDNA Aptamers Against Candidalysin
2.4. Aptamer Synthesis
2.5. Preparation and Characterization of AuNPs
2.6. Experimental Procedure
2.7. Colorimetric Determination of Reaction Solution
2.8. SERS Analysis of Reaction Solution
3. Results and Discussion
3.1. Characterization of AuNPs
3.2. Mechanism of the Aptamer–AuNPs-Based Colorimetric Biosensor
3.3. Optimization of Determination Conditions
3.4. Screening of 80 Aptamers and Construction of the Aptamer–AuNPs Biosensor
3.5. SERS Assay to Verify the Above Results
3.6. Specific Validation of Aptamers
3.7. Advantages and Limitations of the Biosensor
4. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
| AuNPs | Gold nanoparticles |
| HRTEM | High-resolution transmission electron microscopy |
| UV-vis | Ultraviolet–visible spectroscopy |
| SERS | Surface-enhanced Raman scattering |
| LSPR | Localized surface plasmon resonance |
References
- Brown, G.D.; Denning, D.W.; Levitz, S.M. Tackling Human Fungal Infections. Science 2012, 336, 647. [Google Scholar] [CrossRef]
- Nami, S.; Mohammadi, R.; Vakili, M.; Khezripour, K.; Mirzaei, H.; Morovati, H. Fungal vaccines, mechanism of actions and immunology: A comprehensive review. Biomed. Pharmacother. 2019, 109, 333–344. [Google Scholar] [CrossRef]
- Gerós-Mesquita, Â.; Carvalho-Pereira, J.; Franco-Duarte, R.; Alves, A.; Gerós, H.; Pais, C.; Sampaio, P. Oral Candida albicans colonization in healthy individuals: Prevalence, genotypic diversity, stability along time and transmissibility. J. Oral Microbiol. 2020, 12, 1820292. [Google Scholar] [CrossRef]
- Perlroth, J.; Choi, B.; Spellberg, B. Nosocomial fungal infections: Epidemiology, diagnosis, and treatment. Med. Mycol. 2007, 45, 321–346. [Google Scholar] [CrossRef]
- Williams, D.; Lewis, M. Pathogenesis and treatment of oral candidosis. J. Oral Microbiol. 2011, 3. [Google Scholar] [CrossRef] [PubMed]
- Desai, J.V. Candida albicans Hyphae: From Growth Initiation to Invasion. J. Fungi 2018, 4, 10. [Google Scholar] [CrossRef] [PubMed]
- Gauthier, G.M. Dimorphism in fungal pathogens of mammals, plants, and insects. PLoS Pathog. 2015, 11, e1004608. [Google Scholar] [CrossRef]
- Moyes, D.L.; Wilson, D.; Richardson, J.P.; Mogavero, S.; Tang, S.X.; Wernecke, J.; Hofs, S.; Gratacap, R.L.; Robbins, J.; Runglall, M.; et al. Candidalysin is a fungal peptide toxin critical for mucosal infection. Nature 2016, 532, 64–68. [Google Scholar] [CrossRef]
- Russell, C.M.; Rybak, J.A.; Miao, J.; Peters, B.M.; Barrera, F.N. Candidalysin: Connecting the pore forming mechanism of this virulence factor to its immunostimulatory properties. J. Biol. Chem. 2023, 299, 102829. [Google Scholar] [CrossRef]
- Kim, Y.J.; Rho, W.Y.; Park, S.M.; Jun, B.H. Optical nanomaterial-based detection of biomarkers in liquid biopsy. J. Hematol. Oncol. 2024, 17, 10. [Google Scholar] [CrossRef] [PubMed]
- Matteoli, G.; Luin, S.; Bellucci, L.; Nifosì, R.; Beltram, F.; Signore, G. Aptamer-based gold nanoparticle aggregates for ultrasensitive amplification-free detection of PSMA. Sci. Rep. 2023, 13, 19926. [Google Scholar] [CrossRef]
- Yang, J.; Wang, X.; Sun, Y.; Chen, B.; Hu, F.; Guo, C.; Yang, T. Recent Advances in Colorimetric Sensors Based on Gold Nanoparticles for Pathogen Detection. Biosensors 2022, 13, 29. [Google Scholar] [CrossRef] [PubMed]
- Aldewachi, H.; Chalati, T.; Woodroofe, M.N.; Bricklebank, N.; Sharrack, B.; Gardiner, P. Gold nanoparticle-based colorimetric biosensors. Nanoscale 2017, 10, 18–33. [Google Scholar] [CrossRef] [PubMed]
- Anker, J.N.; Hall, W.P.; Lyandres, O.; Shah, N.C.; Zhao, J.; Van Duyne, R.P. Biosensing with plasmonic nanosensors. Nat. Mater. 2008, 7, 442–453. [Google Scholar] [CrossRef]
- Csáki, A.; Stranik, O.; Fritzsche, W. Localized surface plasmon resonance based biosensing. Expert. Rev. Mol. Diagn. 2018, 18, 279–296. [Google Scholar] [CrossRef] [PubMed]
- Li, P.; Wang, B.; Qi, M.; Jiang, H.; Li, Y.; Zhang, X. Construction of aptamer sensor based on Au nanozymes for ultrasensitive SERS detection of tobramycin. J. Food Compos. Anal. 2023, 123, 105617. [Google Scholar] [CrossRef]
- de la Rica, R.; Stevens, M.M. Plasmonic ELISA for the ultrasensitive detection of disease biomarkers with the naked eye. Nat. Nanotechnol. 2012, 7, 821–824. [Google Scholar] [CrossRef]
- Huang, C.C.; Tseng, W.L. Role of fluorosurfactant-modified gold nanoparticles in selective detection of homocysteine thiolactone: Remover and sensor. Anal. Chem. 2008, 80, 6345–6350. [Google Scholar] [CrossRef]
- Qiang, L.; Zhang, Y.; Guo, X.; Gao, Y.; Han, Y.; Sun, J.; Han, L. A rapid and ultrasensitive colorimetric biosensor based on aptamer functionalized Au nanoparticles for detection of saxitoxin. RSC Adv. 2020, 10, 15293–15298. [Google Scholar] [CrossRef]
- Si, P.; Razmi, N.; Nur, O.; Solanki, S.; Pandey, C.M.; Gupta, R.K.; Malhotra, B.D.; Willander, M.; de la Zerda, A. Gold nanomaterials for optical biosensing and bioimaging. Nanoscale Adv. 2021, 3, 2679–2698. [Google Scholar] [CrossRef]
- Wen, C.; Wang, L.; Liu, L.; Shen, X.C.; Chen, H. Surface-Enhanced Raman Probes Based on Gold Nanomaterials for in vivo Diagnosis and Imaging. Chem. Asian J. 2022, 17, e202200014. [Google Scholar] [CrossRef]
- He, J.; Wei, Q.; Wang, S.; Hua, S.; Zhou, M. Bioinspired protein corona strategy enhanced biocompatibility of Ag-Hybrid hollow Au nanoshells for surface-enhanced Raman scattering imaging and on-demand activation tumor-phototherapy. Biomaterials 2021, 271, 120734. [Google Scholar] [CrossRef]
- Liu, S.; Huo, Y.; Deng, S.; Li, G.; Li, S.; Huang, L.; Ren, S.; Gao, Z. A facile dual-mode aptasensor based on AuNPs@MIL-101 nanohybrids for ultrasensitive fluorescence and surface-enhanced Raman spectroscopy detection of tetrodotoxin. Biosens. Bioelectron. 2022, 201, 113891. [Google Scholar] [CrossRef]
- Wu, Z.; He, D.; Cui, B.; Jin, Z. A bimodal (SERS and colorimetric) aptasensor for the detection of Pseudomonas aeruginosa. Mikrochim. Acta 2018, 185, 528. [Google Scholar] [CrossRef]
- Ren, K.; Duan, M.; Su, T.; Ying, D.; Wu, S.; Wang, Z.; Duan, N. A colorimetric and SERS dual-mode aptasensor for the detection of Shiga toxin type II based on Mn/Fe-MIL(53)@AuNSs. Talanta 2024, 270, 125636. [Google Scholar] [CrossRef]
- Zhang, N.; Lv, H.; Wang, J.; Yang, Z.; Ding, Y.; Zhao, B.; Tian, Y. An aptamer-based colorimetric/SERS dual-mode sensing strategy for the detection of sulfadimethoxine residues in animal-derived foods. Anal. Methods 2023, 15, 1047–1053. [Google Scholar] [CrossRef] [PubMed]
- Yang, W.; Luo, D.; Xiao, Y.; Zheng, S.; Wang, Z.; Fu, F. Isolation and characterization of the quinclorac-specific aptamer toward a colorimetric sensor for the visual detection of quinclorac in water and soil. Sens. Actuators B Chem. 2023, 393, 134185. [Google Scholar] [CrossRef]
- Yang, K.A.; Pei, R.; Stojanovic, M.N. In vitro selection and amplification protocols for isolation of aptameric sensors for small molecules. Methods 2016, 106, 58–65. [Google Scholar] [CrossRef]
- Li, D.; Wang, S.; Wang, L.; Zhang, H.; Hu, J. A simple colorimetric probe based on anti-aggregation of AuNPs for rapid and sensitive detection of malathion in environmental samples. Anal. Bioanal. Chem. 2019, 411, 2645–2652. [Google Scholar] [CrossRef]
- Xu, Y.; Han, T.; Li, X.; Sun, L.; Zhang, Y.; Zhang, Y. Colorimetric detection of kanamycin based on analyte-protected silver nanoparticles and aptamer-selective sensing mechanism. Anal. Chim. Acta 2015, 891, 298–303. [Google Scholar] [CrossRef] [PubMed]
- Wei, H.; Li, B.; Li, J.; Wang, E.; Dong, S. Simple and sensitive aptamer-based colorimetric sensing of protein using unmodified gold nanoparticle probes. Chem. Commun. 2007, 3735–3737. [Google Scholar] [CrossRef] [PubMed]
- Song, P.; Peng, G.; Yue, H.; Ogawa, T.; Ikeda, S.; Okumura, K.; Ogawa, H.; Niyonsaba, F. Candidalysin, a Virulence Factor of Candida albicans, Stimulates Mast Cells by Mediating Cross-Talk Between Signaling Pathways Activated by the Dectin-1 Receptor and MAPKs. J. Clin. Immunol. 2022, 42, 1009–1025. [Google Scholar] [CrossRef] [PubMed]
- Mogavero, S.; Sauer, F.M.; Brunke, S.; Allert, S.; Schulz, D.; Wisgott, S.; Jablonowski, N.; Elshafee, O.; Krüger, T.; Kniemeyer, O.; et al. Candidalysin delivery to the invasion pocket is critical for host epithelial damage induced by Candida albicans. Cell. Microbiol. 2021, 23, e13378. [Google Scholar] [CrossRef] [PubMed]








| Name | Sequence (5′ to 3′) | Length (NT) |
|---|---|---|
| Apt4 | GGGTAACGGGCCCGAAGCCCTCCTACCGACGTGCAG | 36 |
| Apt6 | TTCCCCGTGGTCTGTGGTTGTCACTGTGCTGCAGTC | 36 |
| Apt7 | CGCTCCCCCTGGTGATCTACCTCCCACCCATGTATC | 36 |
| Apt8 | TGCCCCTTACGGTGATTCCTCAGCCCTGTCCCAGAT | 36 |
| Apt11 | TGCGGACGGCAGTTTGATAGTTCGTAGGGTCAGGTC | 36 |
| Apt13 | GTCCGGCCAGGTATTCACAGTGCGCGACACCCGCGT | 36 |
| Apt15 | GGAGCGCAGATTACGGCTCGTGTGATGTACACCGGG | 36 |
| Apt40 | CTGTCGAATTTAATTTTGGTCGGGGCAGGGGTTGGG | 36 |
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. |
© 2026 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license.
Share and Cite
Sun, Y.; Zheng, C.; Shi, Y.; Sun, M.; Wang, C.; Han, L.; Zhang, Y.; Hou, T.; Qiang, L. Discovery of the High-Affinity Aptamer for Candidalysin Using a Dual-Mode Colorimetric–SERS Platform. Biosensors 2026, 16, 35. https://doi.org/10.3390/bios16010035
Sun Y, Zheng C, Shi Y, Sun M, Wang C, Han L, Zhang Y, Hou T, Qiang L. Discovery of the High-Affinity Aptamer for Candidalysin Using a Dual-Mode Colorimetric–SERS Platform. Biosensors. 2026; 16(1):35. https://doi.org/10.3390/bios16010035
Chicago/Turabian StyleSun, Yige, Canlan Zheng, Yuxuan Shi, Mingyuan Sun, Chao Wang, Lin Han, Yu Zhang, Tiezhou Hou, and Le Qiang. 2026. "Discovery of the High-Affinity Aptamer for Candidalysin Using a Dual-Mode Colorimetric–SERS Platform" Biosensors 16, no. 1: 35. https://doi.org/10.3390/bios16010035
APA StyleSun, Y., Zheng, C., Shi, Y., Sun, M., Wang, C., Han, L., Zhang, Y., Hou, T., & Qiang, L. (2026). Discovery of the High-Affinity Aptamer for Candidalysin Using a Dual-Mode Colorimetric–SERS Platform. Biosensors, 16(1), 35. https://doi.org/10.3390/bios16010035

