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Applied Sciences
  • Review
  • Open Access

19 April 2023

A Survey on Diabetic Retinopathy Lesion Detection and Segmentation

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Department of Computer Science and Engineering, Qatar University, Doha P.O. Box 2713, Qatar
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This article belongs to the Special Issue The Application of Machine Learning in Medical Image Processing

Abstract

Diabetes is a global problem which impacts people of all ages. Diabetic retinopathy (DR) is a main ailment of the eyes resulting from diabetes which can result in loss of eyesight if not detected and treated on time. The current process of detecting DR and its progress involves manual examination by experts, which is time-consuming. Extracting the retinal vasculature, and segmentation of the optic disc (OD)/fovea play a significant part in detecting DR. Detecting DR lesions like microaneurysms (MA), hemorrhages (HM), and exudates (EX), helps to establish the current stage of DR. Recently with the advancement in artificial intelligence (AI), and deep learning(DL), which is a division of AI, is widely being used in DR related studies. Our study surveys the latest literature in “DR segmentation and lesion detection from fundus images using DL”.

1. Introduction

The number of people diagnosed with diabetes has been increasing at an alarming rate during the past two decades. This accounts for almost half a billion people in the world as per the IDF Diabetes Atlas [1], which makes it a global health concern. This includes people of all ages. By 2045, this figure is supposed to reach seven hundred million and by the year 2040, one in three persons with this ailment will have DR, which is an ailment characterized by the occurrence of damaged blood vessels in the back of the retina. If it is not detected in a timely manner, it can lead to serious problems, like loss of sight. This makes DR a topic of the utmost importance. Doctors must physically analyze fundus images to determine the presence of this disease and to grade it. Fundus images offer graphical records that detail the current ophthalmic form of an indvidual’s retina. This is a very time-consuming process, and in many countries the number of available trained professionals may not be proportionate to the number of patients. This may hinder providing timely treatment to many patients. Diabetes patients are instructed by doctors to have a routine medical screening of their fundus. Still many DR cases are left unnoticed until they reach a critical state. Due to this reason, it is advantageous to have computerized systems that assist in the diagnosis of DR.
Researchers are developing automated systems for DR diagnosis by identifying the existence of certain DR lesions in fundus images. Few of the DR lesions include MA, HM, EX consisting of soft exudates (SE) and hard exudates(HE). DR grades are also established with the help of lesions present in the fundus. For example, the preliminary stage of DR is marked by the beginning of the growth of new blood vessels whose walls weaken, and tiny bulges or MA protrude from them. Later, when DR progresses to proliferative DR, other lesions like HE and SE may develop. HE are little white/yellowish-white deposits with crisp boundaries whereas, SE/Cotton-wool spots are light yellow or white areas which have unclear edges. Additionally, abnormal blood vessels may grow and bleed causing HM. Hence, some researchers are focusing on the detection and segmentation of DR lesions like MA, HM, and EX which will aid in developing better DR diagnoses/grading for automated systems. For example, Figure 1 shows each of these DR lesions, whereas Figure 2 provides a visualization of a healthy retina vs an unhealthy retina.
Figure 1. Diabetic Retinopathy Lesions [2].
Figure 2. Visualization of a healthy retina and an unhealthy retina [3].
There are many challenges to developing such automated systems. The size of these lesions vary in a temporal manner and the OD, and fovea may be mistaken for lesions. Due to this reason, some researchers are focusing on OD/fovea detection which can also help to improve such systems. Another category of studies that are related to DR include retinal blood vessel segmentation studies. These are important to detect several medical disorders like DR and hypertensive retinopathy. Atypical variations in the retinal vessel will give an idea of the severity of several non-ophthalmic ailments like DR, diabetes mellitus, hypertension, arteriosclerosis, cardiovascular disease, and stroke [4]. Hence, it is important for diagnosing these diseases, especially DR.
Several DL methods were used by researchers to accomplish these types of DR studies. We present a review of the current literature in this field by emphasising how DL has been applied to DR segmentation and lesion detection from fundus images. Deep learning is a section of artificial intelligence which uses artificial neural networks with many processing layers for steadily extracting high-level features from the data.
This article is organized as follows: the studies that were reviewed associated with segmentation and lesion detection are shown in Section 2. Section 3 illustrates the datasets used. These are followed by an evaluation and discussion of these methods in Section 4. After this we have compiled a list of some possible future directions in this area of study in Section 5. Lastly, a conclusion is provided in Section 6.

3. Datasets Used for Diabetic Retinopathy Segmentation/Lesion Detection

The datasets being employed have a significant role in the accomplishment of the DL studies reviewed here. Some factors like the quality of these datasets, as well as the precision of their annotations, impact the results of such studies. Therefore, it will be useful to have a list of a few generally utilized fundus image datasets for DR segmentation/lesion detection. We have presented such a list in Table 3.
Table 3. Datasets used for Diabetic Retinopathy Segmentation/Lesion Detection.
Some of the generally utilized, publicly accessible datasets in such studies include DRIVE, STARE, IDRiD, E-ophtha, MESSIDOR, DIARET DB1, and DIARET DB0. Images gathered during a DR assessment program in the Netherlands were employed to create the dataset known as Digital Retinal Images for Vessel Extraction (DRIVE). It consists of twenty images each for training and testing sets [96]. The STARE dataset was collected as part of a project known as STARE (Structured Analysis of the Retina). It provides forty hand-labeled images for blood vessel segmentation [97]. The Indian DR Image Dataset (IDRiD) provides groundtruth for DR and Diabetic Macular Edema (DME). It contains annotations for DR grading, DR lesions, and optic disc [98]. The E-Optha dataset comprises of two sub-datasets called E-Optha-MA and E-Optha-EX [99]. Just as their names indicate these datasets have been annotated for EX and MA correspondingly. Another dataset known as DIARETDB1 has been annotated by four medical experts for DR lesions like MA and EX [100]. The MESSIDOR dataset was part of the MESSIDOR project and has been publicly available since 2008 [101]. The DDR dataset was collected from 9598 patients and 757 images with DR have been annotated for DR lesions [102].
Out of these datasets, DRIVE and STARE datasets are the highly applied datasets for retinal blood vessel segmentation. However, since manual annotation of the retinal blood vessels is time consuming and tedious, these datasets have very few images. Datasets like IDRiD, E-Optha MA, DIARET DB0, and DIARET DB1 have been annotated for MA detection. E-Optha EX, IDRiD, DIARET DB0, and DIARET DB1 have been annotated for EX detection. Whereas the annotation for OD is available for MESSIDOR and DIARET DB1 datasets. It was noted that only very few datasets are annotated for retinal blood vessel segmentation and for lesion detection. This may be because marking retinal blood vessels manually will require a lot of time, as well as effort, and annotating lesions demands intra-annotator agreement and high annotation precision. Due to this reason, the majority of the studies utilized more than one dataset for training as well as validation.

4. Discussion

Several DL architectures were used to effectively perform DR segmentation and lesion detection tasks in the studies reviewed in the previous section. Some examples of these architectures/models are ResNet, Inception, EfficientNet, U-Net, and Encoder-Decoder. Apart from these, most studies used different pre-processing techniques for gaining better performance and for image enhancement. This can include different steps like intensity conversion, image variation attenuation, contrast enhancement, and denoising [103]. Since there will be a huge disparity in the retinal color of different patients, attenuation of fundus images may have to be done. Additionally, to make the features in an image distinctly visible, intensity conversion can be used. Another pre-processing step is the denoising of fundus images. This is necessary, since throughout the image acquisition procedure plenty of noise may have been introduced in these images. Lastly, since there will be highest contrast at the image centre for fundus images, which steadily reduces when moving away from the centre, contrast enhancement may have to be performed. Additional pre-processing steps consist of image resizing, grayscale conversion, gaussian filtering, applying CLAHE [74], and doing several image augmentations using techniques like rotation, flip, and zoom. Some morphological operations like erosion, dilation, top-hat transformation, and bottom-hat transformation were accomplished on the green channel images of the fundus images as pre-processing in [90]. Hasan et al. [92] resized and standardized the images as part of pre-processing. They also performed image augmentation and generated 2D heatmaps as pre-processing.
The studies under review can be compared using several metrics like accuracy, sensitivity, and specificity. These are some of the most commonly used metrics in computer vision. This part presents the results attained per dataset by utilizing the cited methods for segmentation or lesion detection. This has been done by reporting the results with the help of tables and figures to identify the best-performing deep-learning architectures for these tasks. Table 4, Table 5 and Table 6 present an evaluation of the results achieved by a few studies which were assessed in this study. A visual comparison of some studies that performed retinal blood vessel segmentation, MA detection, and HE detection have been provided in Figure 4 and Figure 5. Finally, Figure 6 provides a comparison of the results attained by researchers for deep-learning-based HE and MA detection on the IDRiD dataset, which is one of the biggest and most highly used datasets preferred by researchers for DR segmentation/lesion detection.
Table 4. Performance comparison of deep-learning based diabetic retinopathy segmentation.The bold and underlined fonts correspondingly show the first and second place.
Table 5. Performance comparison of deep-learning based diabetic retinopathy segmentation. The bold and underlined fonts correspondingly show the first and second place.
Table 6. Performance comparison of deep-learning based diabetic retinopathy lesion-detection. The bold and underlined fonts correspondingly show the first and second place.
Figure 4. Retinal blood vessel segmentation results on the DRIVE dataset using [75,76] methods, respectively. Left: Original Image. Middle: Ground-truth, Right: Segmentation Result.
Figure 5. Comparison of deep-learning-based diabetic retinopathy microaneurysm detection and hard exudates detection results performed by [35,43] respectively on the IDRiD dataset.
Figure 6. Performance comparison of deep-learning based diabetic retinopathy with hard exudate and microaneurysm detection studies which employed the IDRiD dataset [22,28,31,33,38,40,41,50,53,54].

4.1. Diabetic Retinopathy Segmentation

DR segmentation-based studies include those studies that segment retinal blood vessels, OD, or ROI from fundus images. Table 4 and Table 5 provides a comparison of the reviewed DR retinal blood vessel segmentation studies grouped according to the datasets used by them. The segmented results obtained will be helpful for extended research in the area of DR. According to these tables, it is obvious that most of the studies obtained good accuracies but the specificity and sensitivity values are unavailable for some studies. It is clear that on the STARE dataset, the authors of [74] attained the highest accuracy value of 99.7% which is better by 0.6% than the second highest accuracy value of 99.1%, obtained by the authors in [75] and 1.1% better than the accuracy values obtained by other methods. They could also achieve the highest specificity value compared to other methods. Whereas, when sensitivity is taken into account, the highest value was obtained by the authors in [66].
When we look at the values obtained for the DRIVE dataset in the table, the same study that achieved the highest accuracy value for the STARE dataset also obtained the best value for specificity as well as the second-best value for accuracy. Whereas, the highest values for accuracy and sensitivity, 99.9% and 96.7% were obtained by the authors in [83,92], respectively. Figure 4 provides a further comparison of retinal blood vessel segmentation results using the DRIVE dataset by the researchers in [75,76]. We can observe that the former study clearly segments the retinal blood vessels without any trace of OD and fovea, whereas in the second study parts of the OD and fovea are present in the obtained result.
One of the major challenges which researchers find while performing retinal blood vessel segmentation, is the segmention of tiny blood vessels. Hence, more studies are required that can effectively detect these similar to the study of [76]. It would also be beneficial to classify the detected blood vessels into arteries/veins as well as to determine the width of these blood vessels, which will provide valuable information that can be used to determine the present condition of the patient’s eyes. When it comes to OD segmentation, the major challenge is that other DR lesions may be wrongly segmented as OD due to their similar shape, size, and color.

4.2. Lesion Detection

DR lesion detection-based studies include studies that detected DR lesions like MA, EX, and HM. This section attempts to compare these studies using three metrics which include accuracy, sensitivity, and specificity. The values for these are stated in many studies. Table 6 provides a comparison of DR lesion-detection-based studies. The studies have been grouped according to the type of lesions they detected as well as according to the datasets used by them. In the case of EX, the maximum number of studies used the DIARET DB1, and the highest value for accuracy was obtained by the authors in [24] which is 0.2% higher than the second-best accuracy value obtained by the authors in [44]. The highest sensitivity value was obtained by the authors in [17], whereas the authors in [26] obtained the highest specificity value. From the table, it can also be seen that the E-Optha dataset has been used by many studies for HE and MA detection. In the first case, the highest accuracy and specificity values of 98.4% and 98.8%, respectively, were achieved by the authors in [39]. They also achieved the best accuracy and specificity values of 99.2% and 99.8%, respectively, for MA detection also. Whereas, the highest values of sensitivity for HE and MA detection on the E-Optha dataset were achieved by the authors in [22,53,54]. In the case of HM, the maximum accuracy of 99.4% on the MESSIDOR dataset was obtained by the authors in [59]. Whereas, the maximum accuracy value of 97.2% on the DIARET DB1 dataset was obtained by the authors in [58].
Figure 5 provides a comparison of MA detection results on the IDRiD dataset by the researchers in [35,43] and a comparison of HE detection results on the IDRiD dataset by the researchers in [35,43]. As seen in the figure, the authors in [43] could effectively detect HE using U-Net and MA using a modified U-Net. Whereas, the authors in [35] could obtain similar results using the JSeg model.
Figure 6 provide a further comparison of the results obtained by researchers for deep-learning-based HE and MA detection on the IDRiD dataset. It can be clearly seen that the authors in Sambyal et al. have obtained the best value of 99.9% for all three metrics for both HE and MA detection on the IDRiD dataset. This is followed by the study by the authors in Xue et al., which achieved very close values for accuracy and specificity. In the case of HE detection, all the studies could achieve accuracy values greater than 98% except for the study by the authors in Gupta et al. [48].
Just like DR segmentation, there are several challenges to performing DR lesion detection. If we take the case of MA detection, the main challenge is their very small size. But MA detection is very important to determine the onset of DR. EX detection is also challenging since they may not have well-defined boundaries. Additionally, as mentioned before, the OD and fovea may be mistakenly detected as lesions due to their similar shape, size, and color. Finally, the size of DR lesions, like EX, vary according to the severity of DR which makes it even more challenging.

5. Future Directions

Diabetic retinopathy is a topic in which a large amount of research is happening lately. In this section, we would like to present some possible directions for future work related to DR segmentation and DR lesion detection.
  • The number of studies which performed optic disc/fovea segmentation are relatively few in the reviewed literature. Hence, more research studies are needed in this area.
  • Similarly, in the case of DR lesion detection, more studies need to be performed for HM/SE detection.
  • Due to the serious complications that can result from proliferative DR, it is desirable to detect DR at an early stage. Hence, it will be beneficial to have more studies which focus on non-proliferative DR lesions.
  • Security is of prime importance for any proposed method for DR segmentation/lesion detection. Hence, studies like the recent one by the authors in [104] are required. They have used adversarial training and feature fusion for DR detection.
  • DR patients are at the risk of developing other conditions like glaucoma. Hence, more studies related to such conditions similar to the latest study by the authors in [105] are needed. They performed glaucoma detection by using a novel deep CNN.

6. Conclusions

The latest literature in the field of “diabetic retinopathy segmentation and lesion detection from fundus images using deep learning” was surveyed. The studies in this field can be grouped as blood vessel segmentation based studies, lesion detection based studies, and OD segmentation-based studies. Lesion detection-based studies can further be classified into MA detection, EX (soft and hard) detection, and HM detection.
We found that almost all recent DL networks/architectures have been utilized effectively for DR segmentation and lesion detection in the studies that were reviewed. It was also observed that there is a spike in the number of these kinds of studies recently. We also created a table of the generally utilized retinal fundus image datasets for DR retinal blood vessel segmentation and lesion detection. Finally, we performed a comparison based on the performance of studies from each type of DR study reviewed here. As future work, we may do a systematic literature review in this field.

Author Contributions

Conceptualization, A.S., O.E. and S.A.-M.; data curation, A.S.; formal analysis, A.S.; methodology, A.S., O.E. and S.A.-M.; project administration, S.A.-M. and N.A.; supervision, S.A.-M. and N.A.; validation, A.S., O.E., S.A.-M. and N.A.; visualization, A.S. and O.E.; writing—original draft, A.S.; writing—review and editing, A.S., O.E., S.A.-M. and N.A. All authors have read and agreed to the published version of the manuscript.

Funding

Open Access funding provided by the Qatar National Library.

Institutional Review Board Statement

Not applicable.

Data Availability Statement

Not applicable.

Acknowledgments

This publication was supported by Qatar University Internal Grant QUHI-CENG22/23-548. The findings achieved herein are solely the responsibility of the authors.

Conflicts of Interest

The authors declare no conflict of interest.

Abbreviations

DRDiabetic retinopathy
DLDeep learning
AIArtificial intelligence
CNNConvolutional neural network
ODOptic disc
MAMicroaneurysms
HMHemorrhages
EXExudates
SESoft exudates
HEHard exudates

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