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Epigenomes, Volume 1, Issue 3

2017 December - 11 articles

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Articles (11)

  • Article
  • Open Access
1 Citations
9,656 Views
22 Pages

Large-Scale Integrative Analysis of Epigenetic Modifications Induced by Isotretinoin, Doxycycline and Metronidazole in Murine Colonic Intestinal Epithelial Cells

  • Eugenia Becker,
  • Susan Bengs,
  • Sirisha Aluri,
  • Lennart Opitz,
  • Kirstin Atrott,
  • Felix Rost,
  • Irina Leonardi,
  • Claudia Stanzel,
  • Tina Raselli and
  • Gerhard Rogler
  • + 2 authors

18 December 2017

Environmental factors are playing a central role in triggering inflammatory responses in the intestine. There is increasing evidence that the development of inflammatory bowel disease (IBD) is deriving from an aberrant immune response to the commensa...

  • Article
  • Open Access
1 Citations
7,735 Views
11 Pages

The Genome-Wide DNA Methylation Profile of Peripheral Blood Is Not Systematically Changed by Short-Time Storage at Room Temperature

  • Nicklas Heine Staunstrup,
  • Anna Starnawska,
  • Mette Nyegaard,
  • Anders Lade Nielsen,
  • Anders Dupont Børglum and
  • Ole Mors

15 December 2017

Background: Epigenetic epidemiology has proven an important research discipline in the delineation of diseases of complex etiology. The approach, in such studies, is often to use bio-banked clinical material, however, many such samples were collected...

  • Article
  • Open Access
1 Citations
6,655 Views
31 Pages

PRC1 Prevents Replication Stress during Chondrogenic Transit Amplification

  • Frank Spaapen,
  • Lars M. T. Eijssen,
  • Michiel E. Adriaens,
  • Tim J. Welting,
  • Peggy Prickaerts,
  • Juliette Salvaing,
  • Vivian E. H. Dahlmans,
  • Donald A. M. Surtel,
  • Frans Kruitz and
  • Jan Willem Voncken
  • + 6 authors

11 December 2017

Transit amplification (TA), a state of combined, rapid proliferative expansion and differentiation of stem cell-descendants, remains poorly defined at the molecular level. The Polycomb Repressive Complex 1 (PRC1) protein BMI1 has been localized to TA...

  • Review
  • Open Access
9 Citations
10,319 Views
22 Pages

Switch-Like Roles for Polycomb Proteins from Neurodevelopment to Neurodegeneration

  • Anke Hoffmann,
  • Vincenza Sportelli,
  • Michael Ziller and
  • Dietmar Spengler

Polycomb Group (PcG) proteins are best-known for maintaining repressive or active chromatin states that are passed on across multiple cell divisions, and thus sustain long-term memory of gene expression. PcG proteins engage different, partly gene- an...

  • Review
  • Open Access
8 Citations
8,400 Views
16 Pages

Regulation and Functional Significance of 5-Hydroxymethylcytosine in Cancer

  • Vittal Rangan Arvinden,
  • Arunagiri Kuha Deva Magendhra Rao,
  • Thangarajan Rajkumar and
  • Samson Mani

23 November 2017

Epigenetic modes of gene regulation are important for physiological conditions and its aberrant changes can lead to disease like cancer. 5-hydroxymethylcytosine (5hmC) is an oxidized form of 5-methylcytosine (5mC) catalyzed by Ten Eleven Translocatio...

  • Review
  • Open Access
13 Citations
8,921 Views
17 Pages

Genome-Wide Epigenetic Studies in Chicken: A Review

  • Sarah-Anne David,
  • Marjorie Mersch,
  • Sylvain Foissac,
  • Anne Collin,
  • Frédérique Pitel and
  • Vincent Coustham

23 November 2017

Over the years, farmed birds have been selected on various performance traits mainly through genetic selection. However, many studies have shown that genetics may not be the sole contributor to phenotypic plasticity. Gene expression programs can be i...

  • Review
  • Open Access
1 Citations
4,712 Views
9 Pages

EZH2 Single Nucleotide Variants (SNVs): Diagnostic and Prognostic Role in 10 Solid Tumor Types

  • Elisa Paolicchi,
  • Lorenzo Fornaro,
  • Stefano Landi,
  • Sushilaben Rigas and
  • Francesco Crea

The enhancer of zeste homolog 2 (EZH2) gene encodes a histone methyltransferase that is a catalytic subunit of the Polycomb repressive complex 2 (PRC2) group of proteins that act to repress gene expression. The EZH2 locus is rarely mutated in solid t...

  • Review
  • Open Access
8 Citations
8,973 Views
21 Pages

Molecular and Epigenetic Mechanisms Underlying Cognitive and Adaptive Responses to Stress

  • Alexandra F. Trollope,
  • Karen R. Mifsud,
  • Emily A. Saunderson and
  • Johannes M. H. M. Reul

Consolidation of contextual memories after a stressful encounter is essential for the survival of an organism and in allowing a more appropriate response to be elicited should the perceived threat reoccur. Recent evidence has explored the complex rol...

  • Article
  • Open Access
16 Citations
6,511 Views
11 Pages

Tissue-Specific Response to Experimental Demethylation at Seed Germination in the Non-Model Herb Erodium cicutarium

  • Conchita Alonso,
  • Mónica Medrano,
  • Ricardo Pérez,
  • Pilar Bazaga and
  • Carlos M. Herrera

Experimental alteration of DNA methylation is a suitable tool to infer the relationship between phenotypic and epigenetic variation in plants. A detailed analysis of the genome-wide effect of demethylating agents, such as 5-azacytidine (5azaC), and z...

  • Article
  • Open Access
8 Citations
9,362 Views
17 Pages

Saliva as a Blood Alternative for Genome-Wide DNA Methylation Profiling by Methylated DNA Immunoprecipitation (MeDIP) Sequencing

  • Nicklas Heine Staunstrup,
  • Anna Starnawska,
  • Mette Nyegaard,
  • Anders Lade Nielsen,
  • Anders Børglum and
  • Ole Mors

Abstract: Background: Interrogation of DNA methylation profiles hold promise for improved diagnostics, as well as the delineation of the aetiology for common human diseases. However, as the primary tissue of the disease is often inaccessible without...

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Epigenomes - ISSN 2075-4655