Genetic, Epigenetic, and Non-Genetic Factors in Testicular Dysgenesis Syndrome: A Narrative Review
Abstract
1. Introduction
2. Materials and Methods
3. Genetic and Epigenetic Causes of TDS
3.1. Cryptorchidism
3.2. Hypospadias
3.3. Testicular Cancer
3.4. Male Infertility
4. Maternal and Fetal Factors Associated with TDS
4.1. Characteristics of Pregnancy
4.2. Birth Weight
4.3. Systemic Arterial Hypertension and Diabetes Mellitus
4.4. Maternal Weight and Physical Activity
4.5. Smoking Habit
4.6. Alcohol and Caffeine
4.7. Assisted Reproductive Technology
4.8. Drugs
4.9. Socioeconomic Status
5. Paternal Factors Associated with TDS
6. Endocrine-Disrupting Chemicals
6.1. Mechanism of Action
6.2. Evidence Regarding TDS
7. Shared Risk Factors Among TDS Components
8. Possible Mechanistic Models of Synergic Effect of Environmental Factors and Genetic Background on Pathogenesis of TDS
9. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
Abbreviations
| TDS | Testicular dysgenesis syndrome |
| GCTs | Germ cells tumors |
| AGD | Anogenital distance |
| INSL3 | Insulin-like factor 3 |
| AR | Androgen receptor |
| EDCs | Endocrine-disrupting chemicals |
| DSDs | Disorders of sex development |
| KCTD13 | Potassium-channel-tetramerization-domain-containing-13 |
| GWAS | Genome-wide association studies |
| SF1 | Steroidogenic Factor 1 |
| DMRT1 | Doublesex and Mab-3 Related Transcription Factor 1 |
| SNP | Single Nucleotide Polimorphism |
| MPW | Male programming window |
| WES | Whole-exome sequencing |
| DHT | Dihydrotestosterone |
| DMRs | Differentially methylated regions |
| WHO | World Health Organization |
| GCNIS | Germ cell neoplasia in situ |
| CIS | Carcinoma-in situ |
| IGCNU | Intratubular germ cell neoplasia unclassified |
| TIN | Testicular intra-epithelial neoplasia |
| ASEX | Arizona Sexual Experiences Scale |
| SFRP1 | Secreted frizzled-related protein 1 |
| IGFBP6 | Insulin-like growth factor binding protein-6 |
| HDAC3 | Histone deacetylase 3 |
| DCN | Decorin |
| ESCs | Embryonic stem cells |
| HDP | Hypertensive disorders of pregnancy |
| LBW | Low birth weight |
| SGA | Small for gestational age |
| ROS | Reactive oxygen species |
| hCG | Human Chorionic Gonadotrophin |
| ART | Assisted Reproductive Technology |
| IVF | In Vitro Fertilization |
| ICSI | Intracytoplasmic Sperm Injection |
| NSAIDs | Non-Steroidal Anti-inflammatory Drugs |
| PFAS | Per- and polyfluoroalkyl Substances |
| PCBs | Polychlorinated biphenyls |
| BPA | Bisphenol A |
| ER | Estrogen receptor |
| DDT | Dichlorodiphenyltrichloroethane |
| DEHP/DBP | Di-2-ethylhexyl phthalate/dibutyl phthalate |
| LH | Luteinizing hormone |
| DES | Diethylstilbestrol |
| DINP | Diisononyl phthalate |
| PFOA | Perfluorooctanoic acid |
| PFOS | Perfluorooctanesulfonic acid |
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| Gene | Function/Pathway | Documented Role | Evidence/Notes Regarding Cryptorchidism |
|---|---|---|---|
| INSL3 | Fetal hormone involved in transabdominal testicular descent | Rare mutations associated with bilateral cryptorchidism; essential in mouse models [49,51] | Recessive variants can cause isolated cryptorchidism |
| RXFP2 | Receptor of INSL3 | Mutations linked to persistent or bilateral cryptorchidism; limited role in sporadic cases [52] | Some variants confirmed in families with autosomal recessive inheritance |
| AR | Androgen receptor | CAG/GGN repeat polymorphisms linked to reduced androgen sensitivity [55] | Association with cryptorchidism remains poorly replicable |
| NR5A1 | SF-1, regulator of steroidogenesis | Mutations linked to DSD, infertility, and variable phenotypes; occasionally present in cryptorchidism [53,54] | Responsible for ~10–15% of DSD cases; cryptorchidism often part of broader phenotype |
| WT1, SOX9, GATA4, DHH | Testicular development and gonadal differentiation | Variants associated with gonadal dysgenesis and testicular dysfunction [53,54] | Indirect or secondary role in cryptorchidism |
| KCTD13 | Unknown role in genitourinary tract. Loss of KCTD13 in germ lines was associated with decreased intracellular AR levels. | Prevalence of variants significantly higher in patients with genitourinary abnormalities in comparison to control [56] | Haploinsufficiency and homozygote deletion in mice caused cryptorchidism. |
| DMRT1 | Germ cell regulation and Sertoli cell differentiation | Deletions/mutations linked to gonadal dysgenesis and infertility; possible link to testicular cancer [59] | Limited direct evidence for cryptorchidism involvement |
| AXIN1 | WNT pathway | SNPs associated with increased risk of cryptorchidism [60] | Evidence derived from small cohorts |
| ATRX, PIWIL1, CPEB1, DAZL | Spermatogenesis regulation and germ cell development | Prioritized from gene network analysis and human/mouse expression data [61,62] | Indirect but potentially relevant contribution |
| Germ Cell Tumors | |
|---|---|
| Derived from GCNIS | Unrelated to GCNIS |
| Seminoma | Spermatocytic tumor Yolk sac tumor (prepubertal-type) Teratoma (prepubertal-type) Testicular NET |
Non seminomatous GCTs
| |
| Sex Cord Stromal Tumors | |
| Leydig cell tumor | |
| Sertoli cell tumor | |
| Granulosa cell tumor | |
| The fibroma thecoma family of tumors | |
| Mixed and other sex cord stromal tumors | |
| Class | Main Uses | Current Regulatory Status (Banned/Restricted) | Metabolism and Exposure |
|---|---|---|---|
| Phthalates | Plasticizers in packaging, medical devices, toys, and personal care products. | Some (e.g., diethylhexyl phthalate, dibutyl phthalate) restricted or banned in the EU and USA due to reproductive toxicity. | Rapid metabolism: hydrolyzed to monoesters and conjugated; excreted in urine. Exposure occurs via ingestion, inhalation, and dermal contact [237]. |
| Phenols (e.g., Bisphenol A, Bisphenol S) | Used in the production of polycarbonate plastics, epoxy resins, food packaging, and thermal paper. | Bisphenol A banned in baby bottles and food-contact materials in the EU and several countries; BPS and BPF increasingly monitored as substitutes. | Relatively rapid metabolism through conjugation (glucuronidation/sulfation); exposure mainly via ingestion, inhalation of dust, and dermal contact [238] |
| Pesticides | Insecticides, herbicides, and fungicides used in agriculture and public health. | Many banned or restricted in the EU and North America; some persistent organic pollutants still detected globally. | Variable: organophosphates are metabolized quickly, while organochlorines are persistent and bioaccumulative. Exposure through food, air, and occupational contact [239] |
| Polychlorinated Biphenyls (PCBs) | Formerly used as dielectric fluids in transformers, capacitors, and lubricants. | Banned worldwide since the 1970s–1980s under the Stockholm Convention, but residues persist in the environment. | Very slow metabolism; lipophilic and bioaccumulative in adipose tissue; exposure mainly via diet (fish, meat, dairy) [240]. |
| Per- and polyfluoroalkyl substances PFAS | Water- and oil-repellent coatings, firefighting foams, textiles | Perfluorooctanoic acid (PFOA) and Perfluorooctanesulfonic acid (PFOS) restricted or banned in EU and USA for certain industrial uses | Highly persistent, bioaccumulative; main exposure via food and water [241] |
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Ciarloni, A.; delli Muti, N.; Sacco, S.; Ambo, N.; Di Giacomi, V.; Perrone, M.; Rossi, S.; Balercia, M.; Salvio, G.; Balercia, G. Genetic, Epigenetic, and Non-Genetic Factors in Testicular Dysgenesis Syndrome: A Narrative Review. Genes 2026, 17, 40. https://doi.org/10.3390/genes17010040
Ciarloni A, delli Muti N, Sacco S, Ambo N, Di Giacomi V, Perrone M, Rossi S, Balercia M, Salvio G, Balercia G. Genetic, Epigenetic, and Non-Genetic Factors in Testicular Dysgenesis Syndrome: A Narrative Review. Genes. 2026; 17(1):40. https://doi.org/10.3390/genes17010040
Chicago/Turabian StyleCiarloni, Alessandro, Nicola delli Muti, Sara Sacco, Nicola Ambo, Valentina Di Giacomi, Michele Perrone, Silvia Rossi, Marinella Balercia, Gianmaria Salvio, and Giancarlo Balercia. 2026. "Genetic, Epigenetic, and Non-Genetic Factors in Testicular Dysgenesis Syndrome: A Narrative Review" Genes 17, no. 1: 40. https://doi.org/10.3390/genes17010040
APA StyleCiarloni, A., delli Muti, N., Sacco, S., Ambo, N., Di Giacomi, V., Perrone, M., Rossi, S., Balercia, M., Salvio, G., & Balercia, G. (2026). Genetic, Epigenetic, and Non-Genetic Factors in Testicular Dysgenesis Syndrome: A Narrative Review. Genes, 17(1), 40. https://doi.org/10.3390/genes17010040

