Complex Modes of Inheritance in Hereditary Red Blood Cell Disorders: A Case Series Study of 155 Patients
Abstract
:1. Introduction
2. Materials and Methods
2.1. Patients and Genomic DNA Preparation
2.2. Libraries Establishment
2.3. Sequencing and Data Analysis
2.4. Gene Ranking
2.5. Statistical Analysis
3. Results
3.1. NGS-Based Genetic Testing for Identification of Multiple Disease-Causing Genotypes
3.2. Blood Count, Hemolytic Markers, and Iron Balance of Dual Inheritance Patients
3.3. Hydration and Deformability Status of Dual Inheritance Patients
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Conflicts of Interest
References
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Gene | HGVS Nomenclature | ACMG Rules † | Method | Class | |||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
cDNA-level | Protein-level | PVS1 | PS1 | PS2 | PS3 | PS4 | PS5 | PM1 | PM2 | PM3 | PM4 | PM5 | PM6 | PM7 | PP1 | PP2 | PP3 | PP4 | PP5 | PP6 | BA1 | BS1 | BS2 | BS3 | BS4 | BS5 | BP1 | BP2 | BP3 | BP4 | BP5 | BP6 | BP7 | BP8 | |||
ABCB6 | c.1361T>C | p.Val454Ala | Automated | B | |||||||||||||||||||||||||||||||||
Adjusted | LP | ||||||||||||||||||||||||||||||||||||
ABCB6 | c.1402G>T | p.Ala468Ser | Automated | V | |||||||||||||||||||||||||||||||||
Adjusted | LP | ||||||||||||||||||||||||||||||||||||
ABCB6 | c.1474G>A | p.Ala492Thr | Automated | B | |||||||||||||||||||||||||||||||||
Adjusted | LP | ||||||||||||||||||||||||||||||||||||
ABCB6 | c.1691T>C | p.Met564Thr | Automated | V | |||||||||||||||||||||||||||||||||
Adjusted | V | ||||||||||||||||||||||||||||||||||||
ABCB6 | c.1762G>A | p.Gly588Ser | Automated | B | |||||||||||||||||||||||||||||||||
Adjusted | V | ||||||||||||||||||||||||||||||||||||
ABCB6 | c.2215C>T | p.Arg739Cys | Automated | V | |||||||||||||||||||||||||||||||||
Adjusted | LP | ||||||||||||||||||||||||||||||||||||
ANK1 | c.613-1G>C | - | Automated | P | |||||||||||||||||||||||||||||||||
- | - | ||||||||||||||||||||||||||||||||||||
ANK1 | c.1540G>T | p.Gly514Cys | Automated | V | |||||||||||||||||||||||||||||||||
Adjusted | LP | ||||||||||||||||||||||||||||||||||||
G6PD | c.1360C>T | p.Arg454Cys | Automated | P | |||||||||||||||||||||||||||||||||
- | - | ||||||||||||||||||||||||||||||||||||
KCNN4 | c.983A>G | p.His328Arg | Automated | V | |||||||||||||||||||||||||||||||||
Adjusted | LP | ||||||||||||||||||||||||||||||||||||
KCNN4 | c.1018C>A | p.His340Asn | Automated | V | |||||||||||||||||||||||||||||||||
Adjusted | LP | ||||||||||||||||||||||||||||||||||||
LARS2 | c.457A>C | p.Asn153His | Automated | V | |||||||||||||||||||||||||||||||||
Adjusted | LP | ||||||||||||||||||||||||||||||||||||
PIEZO1 | c.608T>C | p.Leu203Pro | Automated | LB | |||||||||||||||||||||||||||||||||
Adjusted | V | ||||||||||||||||||||||||||||||||||||
PIEZO1 | c.1001C>T | p.Ala334Val | Automated | V | |||||||||||||||||||||||||||||||||
Adjusted | LP | ||||||||||||||||||||||||||||||||||||
PIEZO1 | c.1447G>A | p.Val483Met | Automated | V | |||||||||||||||||||||||||||||||||
Adjusted | V | ||||||||||||||||||||||||||||||||||||
PIEZO1 | c.1813A>G | p.Met605Val | Automated | V | |||||||||||||||||||||||||||||||||
Adjusted | LP | ||||||||||||||||||||||||||||||||||||
PIEZO1 | c.3935C>T | p.Ala1312Val | Automated | B | |||||||||||||||||||||||||||||||||
Adjusted | LP | ||||||||||||||||||||||||||||||||||||
PIEZO1 | c.4481A>C | p.Glu1494Ala | Automated | V | |||||||||||||||||||||||||||||||||
Adjusted | LP | ||||||||||||||||||||||||||||||||||||
PIEZO1 | c.5195C>T | p.Thr1732Met | Automated | B | |||||||||||||||||||||||||||||||||
Adjusted | V | ||||||||||||||||||||||||||||||||||||
PIEZO1 | c.5835C>G | p.Phe1945Leu | Automated | V | |||||||||||||||||||||||||||||||||
Adjusted | LP | ||||||||||||||||||||||||||||||||||||
PIEZO1 | c.5981C>G | p.Ser1994Cys | Automated | V | |||||||||||||||||||||||||||||||||
Adjusted | LP | ||||||||||||||||||||||||||||||||||||
PIEZO1 | c.6205G>A | p.Val2069Met | Automated | V | |||||||||||||||||||||||||||||||||
Adjusted | LP | ||||||||||||||||||||||||||||||||||||
PIEZO1 | c.6796G>A | p.Val2266Ile | Automated | V | |||||||||||||||||||||||||||||||||
Adjusted | P | ||||||||||||||||||||||||||||||||||||
PIEZO1 | c.7180G>A | p.Gly2394Ser | Automated | LB | |||||||||||||||||||||||||||||||||
Adjusted | P | ||||||||||||||||||||||||||||||||||||
PIEZO1 | c.7219G>C | p.Glu2407Gln | Automated | V | |||||||||||||||||||||||||||||||||
Adjusted | P | ||||||||||||||||||||||||||||||||||||
PIEZO1 | c.7367G>A | p.Arg2456His | Automated | LP | |||||||||||||||||||||||||||||||||
Adjusted | P | ||||||||||||||||||||||||||||||||||||
PIEZO1 | c.7529C>T | p.Pro2510Leu | Automated | B | |||||||||||||||||||||||||||||||||
Adjusted | LP | ||||||||||||||||||||||||||||||||||||
PIEZO1 | c.7558A>G | p.Lys2520Glu | Automated | B | |||||||||||||||||||||||||||||||||
Adjusted | LP | ||||||||||||||||||||||||||||||||||||
PKLR | c.1675C>T | p.Arg559* | Automated | P | |||||||||||||||||||||||||||||||||
- | - | ||||||||||||||||||||||||||||||||||||
SEC23B | c.1233+4C>T | - | Automated | V | |||||||||||||||||||||||||||||||||
Adjusted | V | ||||||||||||||||||||||||||||||||||||
SLC4A1 | c.1462G>A | p.Val488Met | Automated | P | |||||||||||||||||||||||||||||||||
- | - | ||||||||||||||||||||||||||||||||||||
SLC4A1 | c.2608C>T | p.Arg870Trp | Automated | V | |||||||||||||||||||||||||||||||||
Adjusted | LP | ||||||||||||||||||||||||||||||||||||
SLC4A1 | c.2621T>C | p.Leu874Pro | Automated | V | |||||||||||||||||||||||||||||||||
Adjusted | V | ||||||||||||||||||||||||||||||||||||
SPTA1 | c.460_462dupTTG | p.Leu155dup | Automated | V | |||||||||||||||||||||||||||||||||
Adjusted | P | ||||||||||||||||||||||||||||||||||||
SPTA1 | c.1958A>G | p.Tyr653Cys | Automated | B | |||||||||||||||||||||||||||||||||
Adjusted | LP | ||||||||||||||||||||||||||||||||||||
SPTA1 | c.2173C>T | p.Arg725* | Automated | P | |||||||||||||||||||||||||||||||||
- | - | ||||||||||||||||||||||||||||||||||||
SPTA1 | c.2464+1G>A | - | Automated | P | |||||||||||||||||||||||||||||||||
- | - | ||||||||||||||||||||||||||||||||||||
SPTA1 | c.4708G>A | p.Ala1570Thr | Automated | V | |||||||||||||||||||||||||||||||||
Adjusted | V | ||||||||||||||||||||||||||||||||||||
SPTA1 | c.5029G>A | p.Gly1677Arg | Automated | V | |||||||||||||||||||||||||||||||||
Adjusted | LP | ||||||||||||||||||||||||||||||||||||
SPTA1 | c.5183G>A | p.Trp1728* | Automated | P | |||||||||||||||||||||||||||||||||
- | - | ||||||||||||||||||||||||||||||||||||
SPTB | c.40C>T | p.Pro14Ser | Automated | V | |||||||||||||||||||||||||||||||||
Adjusted | V | ||||||||||||||||||||||||||||||||||||
SPTB | c.871G>A | p.Gly291Ser | Automated | V | |||||||||||||||||||||||||||||||||
Adjusted | LP | ||||||||||||||||||||||||||||||||||||
SPTB | c.1606G>A | p.Asp536Asn | Automated | B | |||||||||||||||||||||||||||||||||
Adjusted | V |
Patient ID | Disease | Gene | HGVS Nomenclature | Zygosity | RefSeq ID | AF | HGMD ID | |
---|---|---|---|---|---|---|---|---|
cDNA-Level | Protein-Level | gnomAD § | ||||||
P1 | HS/FP | ABCB6 | NM_005689:c.C2215T | p.Arg739Cys | Het | rs141840760 | 0.0004 | - |
SPTA1 | NM_003126:c.5183G>A | p.Trp1728* | Comp het | - | - | - | ||
SPTA1 | NM_003126:c.6531-12C>T | - | Comp het | rs28525570 | 0.23 | CS995155 | ||
P2 | HS/CDAII | SEC23B | NM_006363:c.1233+4C>T | - | Hom | rs201883785 | - | - |
SPTA1 | NM_003126:c.4708G>A | p.Ala1570Thr | Hom | rs778626016 | - | - | ||
SPTA1 | NM_003126:c.6531-12C>T | - | Hom | rs28525570 | 0.23 | CS995155 | ||
P3 | DHS1/HS | SPTA1 | NM_003126:c.6531-12C>T | - | Comp het | rs28525570 | 0.23 | CS995155 |
SPTA1 | NM_003126:c.5029G>A | p.Gly1677Arg | Comp het | rs771033064 | 0 | CM187374 | ||
PIEZO1 | NM_001142864:c.7558A>G | p.Lys2520Glu | Het | rs570744198 | 0.001 | CM187408 | ||
P4 | DHS1/HE | SPTB | NM_001355437:c.871G>A | p.Gly291Ser | Het | rs143599352 | 0.0002 | - |
PIEZO1 | NM_001142864:c.7219G>C | p.Glu2407Gln | Het | rs200291894 | 0.0001 | CM1922287 | ||
P5 | DHS1/HE | SPTB | NM_001355437:c.40C>T | p.Pro14Ser | Het | rs147059670 | 0.0001 | - |
PIEZO1 | NM_001142864:c.7180G>A | p.Gly2394Ser | Het | rs201950081 | 0.0001 | CM187364 | ||
P6 | DHS1/HS | PIEZO1 | NM_001142864:c.608T>C | p.Leu203Pro | Het | rs977249154 | 0 | - |
SPTA1 | NM_003126:c.6531-12C>T | - | Het | rs28525570 | 0.23 | CS995155 | ||
SPTA1 | NM_003126:c.1958A>G | p.Tyr653Cys | Het | rs148912436 | 0.008 | CM187425 | ||
P7 | DHS1/HS | PIEZO1 | NM_001142864:c.4481A>C | p.Glu1494Ala | Het | - | - | - |
SPTA1 | NM_003126:c.2464+1G>A | - | Hom | rs774632615 | 0 | - | ||
P8 | DHS2/FP/HLASA | ABCB6 | NM_005689:c.1402G>T | p.Ala468Ser | Het | rs777270402 | 0 | - |
LARS2 | NM_015340:c.457A>C | p.Asn153His | Hom | rs786205560 | - | CM1615275 | ||
KCNN4 | NM_002250:c.1018C>A | p.His340Asn | Het | rs76935412 | 0.002 | - | ||
P9 | HS/FP | ABCB6 | NM_005689:c.1762G>A | p.Gly588Ser | Het | rs145526996 | 0.004 | CM128905 |
SLC4A1 | NM_000342:c.2621T>C | p.Leu874Pro | Het | - | - | - | ||
P10 | PKD/DHS1 | PKLR | NM_000298:c.1675C>T | p.Arg559* | Hom | rs532230312 | 0 | CM981585 |
PIEZO1 | NM_001142864:c.6796G>A | p.Val2266Ile | Het | rs546338962 | 0 | CM187363 | ||
P11 | DHS1/HE | PIEZO1 | NM_001142864:c.5195C>T | p.Thr1732Met | Het | rs139051768 | 0.011 | - |
SPTB | NM_001024858:c.1606G>A | p.Asp536Asn | Het | rs145675502 | 0.001 | CM187385 | ||
P12 | DHS1/FP | PIEZO1 | NM_001142864:c.7367G>A | p.Arg2456His | Het | rs587776988 | - | CM127746 |
ABCB6 | NM_005689:c.1474G>A | p.Ala492Thr | Het | rs147445258 | 0.007 | CM169662 | ||
P13 | DHS1/FP | ABCB6 | NM_005689:c.1361T>C | p.Val454Ala | Het | rs61733629 | 0.006 | CM169864 |
PIEZO1 | NM_001142864:c.5981C>G | p.Ser1994Cys | Het | - | - | - | ||
P14 | DHS1/HS | SLC4A1 | NM_000342:c.1462G>A | p.Val488Met | Het | rs28931584 | 0 | CM971385 |
PIEZO1 | NM_001142864:c.5195C>T | p.Thr1732Met | Het | rs139051768 | 0.011 | CM200163 | ||
P15 | DHS1/HS | SLC4A1 | NM_000342:c.2608C>T | p.Arg870Trp | Het | rs28931585 | - | CM951173 |
PIEZO1 | NM_001142864:c.1001C>T | p.Ala334Val | Het | rs574402639 | 0.0003 | - | ||
P16 | DHS2/HS | KCNN4 | NM_002250: c.1018C>A | p.His340Asn | Het | rs76935412 | 0.002 | - |
SPTA1 | NM_003126:c.460_462dupTTG | p.Leu155dup | Het | rs757679761 | 0 | CI890173 | ||
SPTA1 | NM_003126:c.6531-12C>T | - | Het | rs28525570 | 0.23 | CS995155 | ||
P17 | DHS1/DHS2 | PIEZO1 | NM_001142864:c.1813A>G | p.Met605Val | Het | rs1490094586 | - | CM1911810 |
KCNN4 | NM_002250:c.983A>G | p.His328Arg | Het | rs780167756 | - | - | ||
P18 | DHS1/HS | ANK1 | NM_020476:c.613-1G>C | - | Het | - | - | - |
PIEZO1 | NM_001142864:c.3935C>T | p.Ala1312Val | Het | rs34246477 | 0.0014 | - | ||
P19 | DHS1/HS | PIEZO1 | NM_001142864:c.3935C>T | p.Ala1312Val | Het | rs34246477 | 0.001 | - |
ANK1 | NM_020476:c.613-1G>C | - | Het | - | - | - | ||
P20 | DHS1/HS | PIEZO1 | NM_001355436:c.7529C>T | p.Pro2510Leu | Het | rs61745086 | 0.007 | CM1812923 |
ANK1 | NM_000037:c.1540G>T | p.Gly514Cys | Het | rs199975878 | 0 | - | ||
P21 | DHS1/HS | PIEZO1 | NM_001142864:c.1447G>A | p.Val483Met | Het | rs747301309 | 0 | - |
SPTA1 | NM_003126:c.2173C>T | p.Arg725* | Het | - | - | - | ||
SPTA1 | NM_003126:c.2909C>A | p.Ala970Asp | Het | rs35948326 | 0.03 | CM930690 | ||
P22 | DHS1/FP | PIEZO1 | NM_001142864:c.5835C>G | p.Phe1945Leu | Het | rs776602133 | 0 | - |
ABCB6 | NM_005689:c.1691T>C | p.Met564Thr | Het | rs1233572695 | - | - | ||
P23 | DHS1/G6PD | PIEZO1 | NM_001142864:c.6205G>A | p.Val2069Met | Het | rs199752762 | 0.001 | - |
G6PD | NM_001042351:c.1360C>T | p.Arg454Cys | Hem | rs398123546 | 0.0001 | CM920290 |
Analysis | Unit | DHS1 Cases | HS Cases | Dual Inheritance | Reference Range | P § | P1 | P2 | P3 |
---|---|---|---|---|---|---|---|---|---|
(n = 37) | (n = 21) | (n = 16) | |||||||
Age | years | 20.5 ± 3.2 (20.0; 28) | 27.8 ± 4.0 (25.0; 20) | 23.9 ± 5.1 (18.5; 16) | - | 0.32 | - | - | - |
Gender | female/male | 17 (45.9)/20 (54.1) | 16 (76.2)/5 (23.8) | 5 (29.4)/11 (70.6) | - | 0.02 | 0.32 | <0.01 | 0.03 |
Hematological data | |||||||||
RBCs | × 106/µL | 3.1 ± 0.1 (3.0; 36) | 3.9 ± 0.2 (4.3; 19) | 4.0 ± 0.2 (3.9; 15) | 4.0–5.2 | <0.001 | 0.004 | 1.00 | 0.004 |
Hb | g/dL | 12.5 ± 0.4 (12.7; 36) | 11.2 ± 0.6 (11.1; 21) | 10.9 ± 0.5 (10.8; 16) | 11.5–15.5 | 0.06 | - | - | - |
Ht | % | 36.3 ± 1.7 (37.3; 36) | 33.1 ± 1.6 (33.1; 19) | 31.8 ± 1.6 (30.5; 14) | 35–45 | 0.04 | 0.11 | 1.00 | 0.14 |
MCV | fL | 100.5 ± 1.7 (100.0; 36) | 83.2 ± 1.6 (83.8; 21) | 82.5 ± 2. 5 (80.9; 16) | 77–95 | <0.001 | <0.001 | 1.00 | <0.001 |
MCH | pg | 35.9 ± 1.1 (36.0;27) | 28.8 ± 0.9 (29.0; 21) | 27.6 ± 1.1 (27.4; 16) | 25–33 | <0.001 | <0.001 | 1.00 | <0.001 |
MCHC | g/dL | 35.5 ± 0.7 (34.3; 36) | 34.2 ± 0.9 (34.5; 19) | 34.1 ± 0.5 (34.1; 16) | 32–36 | 0.81 | - | - | - |
PLTs | × 103/µL | 414.2 ± 55.3 (375.0; 15) | 276.3 ± 34.1 (270.0; 20) | 288.7 ± 41.8 (232.0; 16) | 150–450 | 0.05 | 0.08 | 1.00 | 0.09 |
ARC | × 103/µL | 164.5 ± 17.9 (145.9; 33) | 238.3 ± 45.9 (234.6; 16) | 217.5 ± 50.5 (144.5; 13) | 20–90 | 0.49 | - | - | - |
Biochemical data and iron balance | |||||||||
Total bilirubin | mg/dL | 3.7 ± 0.6 (3.9; 21) | 2.9 ± 0.6 (2.4; 16) | 3.0 ± 0.5 (3.5; 12) | 0.3–1.0 | 0.59 | - | - | - |
Ferritin | ng/mL | 491.3 ± 82.1 (363.0; 19) | 319.1 ± 117.8 (150.2; 14) | 409.8 ± 154.4 (128.5; 13) | 22–275 | 0.18 | - | - | - |
Ferritin level/dosage age † | - | 38.9 ± 6.5 (30.3; 18) | 10.9 ± 2.9 (7.9; 14) | 36.2 ± 16.1 (11.0; 13) | - | <0.001 | 0.004 | 1.00 | <0.001 |
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Andolfo, I.; Martone, S.; Rosato, B.E.; Marra, R.; Gambale, A.; Forni, G.L.; Pinto, V.; Göransson, M.; Papadopoulou, V.; Gavillet, M.; et al. Complex Modes of Inheritance in Hereditary Red Blood Cell Disorders: A Case Series Study of 155 Patients. Genes 2021, 12, 958. https://doi.org/10.3390/genes12070958
Andolfo I, Martone S, Rosato BE, Marra R, Gambale A, Forni GL, Pinto V, Göransson M, Papadopoulou V, Gavillet M, et al. Complex Modes of Inheritance in Hereditary Red Blood Cell Disorders: A Case Series Study of 155 Patients. Genes. 2021; 12(7):958. https://doi.org/10.3390/genes12070958
Chicago/Turabian StyleAndolfo, Immacolata, Stefania Martone, Barbara Eleni Rosato, Roberta Marra, Antonella Gambale, Gian Luca Forni, Valeria Pinto, Magnus Göransson, Vasiliki Papadopoulou, Mathilde Gavillet, and et al. 2021. "Complex Modes of Inheritance in Hereditary Red Blood Cell Disorders: A Case Series Study of 155 Patients" Genes 12, no. 7: 958. https://doi.org/10.3390/genes12070958
APA StyleAndolfo, I., Martone, S., Rosato, B. E., Marra, R., Gambale, A., Forni, G. L., Pinto, V., Göransson, M., Papadopoulou, V., Gavillet, M., Elalfy, M., Panarelli, A., Tomaiuolo, G., Iolascon, A., & Russo, R. (2021). Complex Modes of Inheritance in Hereditary Red Blood Cell Disorders: A Case Series Study of 155 Patients. Genes, 12(7), 958. https://doi.org/10.3390/genes12070958