Chloroplast Haplotypes of Northern Red Oak (Quercus rubra L.) Stands in Germany Suggest Their Origin from Northeastern Canada
Abstract
:1. Introduction
2. Materials and Methods
2.1. Samples
2.2. DNA Isolation
2.3. Chloroplast Microsatellites
2.4. Chloroplast CAPS Markers
2.5. Chloroplast Haplotypes, Haplotype Diversity and Inter-Population Differentiation
2.6. Minimum Spanning Tree
3. Results
3.1. Minimum Spanning Tree
3.2. Haplotype Diversity
3.3. Haplotype Structure and Distribution
3.4. Haplotype Diversity and Inter-Population Differentiation
4. Discussion
4.1. Haplotype Diversity and Distribution
4.2. Haplotype Distribution and German Red Oak Origin
4.3. Red Oak Stands in North Rhine-Westphalia Might Have Originated from Nova Scotia
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
References
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# | Population | Country | State | N | Longtitude | Latitude |
---|---|---|---|---|---|---|
1 | Achern, Großweiher 1 | Germany | Baden Wuerttemberg | 10 | 8°02′15.7″ E | 48°39′15.2″ N |
2 | Oberkirchen, Renchen 1 | Germany | Baden Wuerttemberg | 10 | 7°59′55.3″ E | 48°34′23.0″ N |
3 | Schutterwald 1 1 | Germany | Baden Wuerttemberg | 10 | 7°52′04.3″ E | 48°27′31.4″ N |
4 | Schutterwald 2 1 | Germany | Baden Wuerttemberg | 10 | 7°51′33.1″ E | 48°27′12.5″ N |
5 | Schutterwald 3 1 | Germany | Baden Wuerttemberg | 10 | 7°51′42.6″ E | 48°27′36.3″ N |
6 | Schutterwald 4 1 | Germany | Baden Wuerttemberg | 10 | 7°51′34.9″ E | 48°27′10.8″ N |
7 | Baruth 1 | Germany | Brandenburg | 10 | 13°22′17.7″ E | 51°59′20.2″ N |
8 | Großbeeren 1 | Germany | Brandenburg | 10 | 13°21′05.9″ E | 52°21′49.2″ N |
9 | Güterfelde 1 1 | Germany | Brandenburg | 10 | 13°04′46.2″ E | 52°27′18.2″ N |
10 | Güterfelde 2 1 | Germany | Brandenburg | 9 | 13°00′15.5″ E | 52°24′55.7″ N |
11 | Güterfelde 3 1 | Germany | Brandenburg | 10 | 13°00′21.9″ E | 52°23′00.8″ N |
12 | Lehnin 1 | Germany | Brandenburg | 9 | 12°27′53.1″ E | 52°24′58.7″ N |
13 | Rathenow, Kater 1 | Germany | Brandenburg | 8 | 12°13′49.4″ E | 52°33′14.4″ N |
14 | Beerbusch 1 | Germany | Lower Saxony | 10 | 9°49′50.0″ E | 52°24′22.3″ N |
15 | Dassel 1 | Germany | Lower Saxony | 10 | 9°35′20.4″ E | 51°46′47.0″ N |
16 | Diensthoop 1 | Germany | Lower Saxony | 10 | 9°22′00.3″ E | 52°56′46.5″ N |
17 | Hepstedt FLA 8 1 | Germany | Lower Saxony | 10 | 9°11′02.0″ E | 53°10′49.7″ N |
18 | Hepstedt FLA 10 1 | Germany | Lower Saxony | 10 | 9°11′11.0″ E | 53°14′59.0″ N |
19 | Luhne 1 | Germany | Lower Saxony | 10 | 9°22′12.5″ E | 53°08′25.8″ N |
20 | Spange FLA 2 1 | Germany | Lower Saxony | 10 | 9°15′43.7″ E | 53°00′09.8″ N |
21 | Spange FLA 3 1 | Germany | Lower Saxony | 10 | 9°15′43.7″ E | 53°00′09.8″ N |
22 | Thörenwald 1 | Germany | Lower Saxony | 10 | 9°21′14.8″ E | 53°20′36.7″ N |
23 | Zienitz 1 | Germany | Lower Saxony | 10 | 10°51′16.2″ E | 53°06′00.9″ N |
24 | Diergardt 1 (“Bornheimer Roteiche”) | Germany | North Rhine-Westphalia (originally from Virginia, USA) | 50 | 7°00′23.2″ E | 50°46′52.2″ N |
25 | Diergardt 2 (“Bornheimer Roteiche”) | Germany | North Rhine-Westphalia (originally from Virginia, USA) | 50 | 7°00′22.9″ E | 50°46′57.6″ N |
26 | Fander Ville 1 | Germany | North Rhine-Westphalia | 49 | 6°51′09.9″ E | 50°49′42.5″ N |
37 | Fander Ville 2 | Germany | North Rhine-Westphalia | 49 | 6°52′29.3″ E | 50°47′25.2″ N |
27 | Leucht FLA 14 1 | Germany | North Rhine-Westphalia | 10 | 6°29′13.0″ E | 51°32′43.4″ N |
28 | Leucht FLA 15 1 | Germany | North Rhine-Westphalia | 10 | 6°30′24.7″ E | 51°32′16.8″ N |
29 | Leucht FLA 16 1 | Germany | North Rhine-Westphalia | 10 | 6°30′29.7″ E | 51°33′30.4″ N |
30 | Leucht FLA 18 1 | Germany | North Rhine-Westphalia | 10 | 6°29′27.6″ E | 51°32′14.7″ N |
31 | Leucht FLA 19 1 | Germany | North Rhine-Westphalia | 10 | 6°29′11.8″ E | 51°32′39.2″ N |
32 | Leucht FLA 20 1 | Germany | North Rhine-Westphalia | 10 | 6°29′52.9″ E | 51°32′22.1″ N |
33 | NRW 11 1 | Germany | North Rhine-Westphalia | 10 | 6°48′08.2″ E | 51°02′20.8″ N |
34 | NRW 17 1 | Germany | North Rhine-Westphalia | 10 | 6°30′38.0″ E | 51°32′18.7″ N |
35 | Schwalm-Nette FLA 12 1 | Germany | North Rhine-Westphalia | 10 | 6°11′41.0″ E | 51°09′00.1″ N |
36 | Schwalm-Nette FLA 13 1 | Germany | North Rhine-Westphalia | 10 | 6°10′54.2″ E | 51°09′49.9″ N |
38 | Holzland1 | Germany | Thuringia | 10 | 11°38′24.8″ E | 50°46′31.8″ N |
39 | Leina 1 | Germany | Thuringia | 10 | 12°32′37.1″ E | 50°58′23.1″ N |
40 | Stößwitz 1 1 | Germany | Thuringia | 9 | 11°43′29.4″ E | 50°46′00.9″ N |
41 | Stößwitz 2 1 | Germany | Thuringia | 10 | 11°43′27.1″ E | 50°45′51.9″ N |
42 | Treben 1 1 | Germany | Thuringia | 10 | 12°25′21.5″ E | 51°03′47.3″ N |
43 | Treben 2 1 | Germany | Thuringia | 9 | 12°30′18.9″ E | 51°03′30.5″ N |
44 | Volkenroda 1 | Germany | Thuringia | 10 | 10°40′00.7″ E | 51°17′59.8″ N |
45 | Chattahoochee 4 | USA | Georgia | 5 | 84°13′54.2″ W | 34°50′31.5″ N |
46 | Rabun 121 | USA | Georgia | 4 | 83°25′21.8″ W | 34°49′20.5″ N |
47 | Dekalb Auburn | USA | Indiana | 4 | 85°03′33.7″ W | 41°22′48.5″ N |
48 | Madison, Anderson 4 | USA | Indiana | 6 | 85°38′18.7″ W | 40°05′53.2″ N |
49 | Steuben Angola | USA | Indiana | 7 | 84°59′26.8″ W | 41°37′57.9″ N |
50 | Brockway Mountain 2 | USA | Michigan | 8 | 87°54′59.2″ W | 47°27′57.5″ N |
51 | Chippewah County 4 | USA | Michigan | 6 | 84°25′54.1″ W | 46°26′59.1″ N |
52 | Ford Forestry Center A 2 | USA | Michigan | 5 | 88°36′06.0″ W | 46°39′09.0″ N |
53 | Ford Forestry Center B 2 | USA | Michigan | 5 | 88°31′27.0″ W | 46°40′27.0″ N |
54 | Huron Mountain Reserve Ives Hill 2 | USA | Michigan | 8 | 87°50′42.8″ W | 46°51′12.9″ N |
55 | Huron Mountain Reserve Lily Pond 2 | USA | Michigan | 8 | 87°49′48.8″ W | 46°50′59.8″ N |
56 | Keweenaw County | USA | Michigan | 8 | 87°54′59.2″ W | 47°27′57.5″ N |
57 | Calumet Township | USA | Michigan | 8 | 88°25′36.3″ W | 47°15′14.3″ N |
58 | Michigan Tech Trails 2 | USA | Michigan | 8 | 88°32′51″W | 47°06′02″N |
59 | Porcupine | USA | Michigan | 8 | 89°37′27.4″ W | 46°49′01.5″ N |
60 | Bennet Gap Pisgah | USA | North Carolina | 8 | 82°46′11.6″ W | 35°19′21.4″ N |
61 | Clay, Nanthahala, Tusquitee 4 | USA | North Carolina | 7 | 83°45′47.7″ W | 35°05′03.0″ N |
62 | Sullivan Elizabethton | USA | Tennessee | 9 | 82°12′07.5″ W | 36°20′53.6″ N |
63 | Sullivan, Cherokee, Watauga 4 | USA | Tennessee | 5 | 81°48′16.4″ W | 36°12′40.8″ N |
64 | Chequamegon National Forest 3 | USA | Wisconsin | 8 | 91°02′08.0″ W | 46°42′54.0″ N |
65 | Nicolet National Forest 3 | USA | Wisconsin | 8 | 88°23′17″W | 45°20′53″N |
66 | Crafts Cove | Canada | New Brunswick | 31 | 65°59′42.7″ W | 45°44′19.7″ N |
67 | Maitland Bridge | Canada | Nova Scotia | 50 | 65°16′15.1″ W | 44°31′15.1″ N |
68 | Nine Mile Woods | Canada | Nova Scotia | 49 | 65°15′34.8″ W | 44°29′26.3″ N |
69 | Oak Lake | Canada | Nova Scotia | 52 | 65°24′21.9″ W | 44°31′02.6″ N |
70 | Wentzells Lake | Canada | Nova Scotia | 40 | 64°38′41.0″ W | 44°29′22.8″ N |
71 | Constance Bay 4 | Canada | Ontario | 6 | 76°04′29.4″ W | 45°29′27.4″ N |
72 | Elgin Aylmer | Canada | Ontario | 2 | 80°59′17.6″ W | 42°46′31.9″ N |
73 | Hastings Carlow | Canada | Ontario | 2 | 77°37′31.3″ W | 45°08′29.4″ N |
74 | McConnel Road | Canada | Ontario | 51 | 79°09′26.1″ W | 46°39′00.5″ N |
75 | Niagara Point Abino | Canada | Ontario | 2 | 79°05′52.6″ W | 42°51′42.9″ N |
76 | Niagara Ridgeway | Canada | Ontario | 5 | 79°03′21.1″ W | 42°52′49.0″ N |
77 | Phelps | Canada | Ontario | 45 | 79 06 21.8 W | 46 22 30.1 N |
78 | Renfrew, Chalk River 4 | Canada | Ontario | 6 | 77°26′40.7″ W | 46°01′22.4″ N |
79 | Charlottetown East Royalty | Canada | Prince Edward Island | 50 | 63°06′38.5″ W | 46°16′06.2″ N |
80 | Gatineau, Plaines de Kazabazua 4 | Canada | Québec | 6 | 75°24′32.6″ W | 45°34′54.9″ N |
81 | Plaines de Kazabazua 2 | Canada | Québec | 11 | 75°41′21.3″ W | 45°27′50.5″ N |
Haplotype | cpSSR Alleles, bp | cpCAPS Alleles | Occurence | Number | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|
ccmp2 | ccmp4 | ucd4 | udt1 | udt4 | 4.1/HaeIII | 5.2/AciI | 17.1/ApaI | Germany | North America | ||
A.1 | 228 | 116 | 99 | 86 | 145 | cut | uncut | uncut | + | + | 690 |
A.2 | 228 | 116 | 99 | 87 | 145 | cut | uncut | uncut | + | + | 126 |
A.3 | 228 | 116 | 99 | 85 | 145 | cut | uncut | uncut | + | + | 49 |
A.4 | 228 | 116 | 99 | 85 | 145 | cut twice | uncut | uncut | + | 10 | |
A.5 | 228 | 116 | 99 | 86 | 145 | uncut | uncut | uncut | + | + | 39 |
A.6 | 228 | 116 | 99 | 86 | 145 | cut twice | uncut | uncut | + | 1 | |
A.7 | 228 | 116 | 97 | 85 | 146 | cut | uncut | uncut | + | 4 | |
A.8 | 228 | 116 | 99 | 85 | 146 | cut twice | uncut | uncut | + | 1 | |
A.9 | 228 | 116 | 99 | 85 | 146 | cut | uncut | uncut | + | 1 | |
A.10 | 228 | 116 | 96 | 86 | 145 | cut | uncut | uncut | + | 1 | |
A.11 | 228 | 116 | 96 | 86 | 146 | cut | uncut | uncut | + | 1 | |
A.12 | 226 | 117 | 99 | 86 | 145 | cut | cut | uncut | + | 1 | |
A.13 | 228 | 116 | 98 | 84 | 146 | cut | uncut | uncut | + | 1 | |
A.14 | 228 | 116 | 99 | 84 | 145 | cut | uncut | uncut | + | 1 | |
A.15 | 228 | 116 | 97 | 84 | 146 | cut | uncut | uncut | + | 1 | |
A.16 | 228 | 116 | 99 | 86 | 145 | cut | uncut | cut | + | 7 | |
A.17 | 228 | 116 | 97 | 86 | 146 | cut | uncut | uncut | + | 4 | |
A.18 | 228 | 117 | 99 | 86 | 145 | cut | uncut | uncut | + | 1 | |
A.19 | 228 | 116 | 99 | 85 | 145 | cut | cut | uncut | + | 1 | |
B.1 | 227 | 115 | 98 | 85 | 146 | cut | uncut | uncut | + | + | 9 |
B.2 | 227 | 115 | 98 | 84 | 146 | uncut | uncut | uncut | + | 1 | |
B.3 | 227 | 115 | 98 | 85 | 146 | uncut | uncut | uncut | + | + | 167 |
B.4 | 227 | 115 | 98 | 85 | 145 | uncut | uncut | uncut | + | 1 | |
B.5 | 227 | 115 | 99 | 85 | 146 | uncut | uncut | uncut | + | + | 6 |
B.6 | 226 | 115 | 99 | 85 | 145 | uncut | uncut | uncut | + | 1 | |
C.1 | 226 | 117 | 97 | 85 | 146 | cut | cut | uncut | + | 4 | |
C.2 | 226 | 117 | 97 | 84 | 146 | cut | cut | uncut | + | 6 | |
C.3 | 226 | 117 | 96 | 85 | 146 | cut | cut | uncut | + | 1 | |
C.4 | 226 | 118 | 98 | 85 | 146 | cut | cut | uncut | + | 7 |
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Götz, J.; Krutovsky, K.V.; Leinemann, L.; Müller, M.; Rajora, O.P.; Gailing, O. Chloroplast Haplotypes of Northern Red Oak (Quercus rubra L.) Stands in Germany Suggest Their Origin from Northeastern Canada. Forests 2020, 11, 1025. https://doi.org/10.3390/f11091025
Götz J, Krutovsky KV, Leinemann L, Müller M, Rajora OP, Gailing O. Chloroplast Haplotypes of Northern Red Oak (Quercus rubra L.) Stands in Germany Suggest Their Origin from Northeastern Canada. Forests. 2020; 11(9):1025. https://doi.org/10.3390/f11091025
Chicago/Turabian StyleGötz, Jeremias, Konstantin V. Krutovsky, Ludger Leinemann, Markus Müller, Om P. Rajora, and Oliver Gailing. 2020. "Chloroplast Haplotypes of Northern Red Oak (Quercus rubra L.) Stands in Germany Suggest Their Origin from Northeastern Canada" Forests 11, no. 9: 1025. https://doi.org/10.3390/f11091025
APA StyleGötz, J., Krutovsky, K. V., Leinemann, L., Müller, M., Rajora, O. P., & Gailing, O. (2020). Chloroplast Haplotypes of Northern Red Oak (Quercus rubra L.) Stands in Germany Suggest Their Origin from Northeastern Canada. Forests, 11(9), 1025. https://doi.org/10.3390/f11091025