Building a Plant DNA Barcode Reference Library for a Diverse Tropical Flora: An Example from Queensland, Australia
Abstract
:1. Introduction
2. Methods
3. Results and Discussion
3.1. Taxonomic Coverage
3.2. Variation within Species across Geographic Breaks
3.3. Burdekin Gap
3.4. Black Mountain Corridor
3.5. Normanby Gap
4. Conclusions
4.1. DNA Barcodes as a Tool for Studying Biogeography
4.2. Data Resources
Acknowledgments
Author Contributions
Conflicts of Interest
References
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Order | Families | Genera | Species | Samples |
---|---|---|---|---|
Alismatales | 1 | 5 | 5 | 5 |
Apiales | 4 | 10 | 13 | 26 |
Aquifoliales | 2 | 4 | 4 | 5 |
Arecales | 1 | 9 | 9 | 18 |
Asparagales | 3 | 35 | 36 | 41 |
Asterales | 3 | 6 | 6 | 9 |
Austrobaileyales | 1 | 1 | 1 | 3 |
Boraginales | 1 | 4 | 4 | 7 |
Brassicales | 1 | 1 | 1 | 2 |
Canellales | 1 | 1 | 1 | 3 |
Caryophyllales | 3 | 4 | 4 | 5 |
Celastrales | 1 | 8 | 9 | 22 |
Commelinales | 2 | 4 | 4 | 5 |
Cucurbitales | 2 | 5 | 6 | 10 |
Dilleniales | 1 | 2 | 3 | 4 |
Dioscoreales | 1 | 1 | 1 | 1 |
Ericales | 6 | 18 | 53 | 112 |
Escalloniales | 1 | 1 | 4 | 5 |
Fabales | 2 | 28 | 38 | 66 |
Gentianales | 4 | 44 | 69 | 134 |
Huerteales | 1 | 1 | 1 | 3 |
Lamiales | 6 | 23 | 25 | 45 |
Laurales | 4 | 13 | 54 | 131 |
Liliales | 3 | 4 | 4 | 6 |
Magnoliales | 3 | 14 | 25 | 75 |
Malpighiales | 15 | 44 | 68 | 129 |
Malvales | 3 | 15 | 24 | 61 |
Myrtales | 4 | 27 | 67 | 141 |
Oxalidales | 3 | 11 | 20 | 38 |
Pandanales | 1 | 1 | 1 | 1 |
Paracryphiales | 1 | 2 | 2 | 3 |
Piperales | 1 | 1 | 3 | 6 |
Poales | 2 | 26 | 28 | 29 |
Proteales | 1 | 18 | 20 | 40 |
Ranunculales | 1 | 8 | 8 | 9 |
Rosales | 6 | 21 | 36 | 65 |
Santalales | 4 | 9 | 9 | 14 |
Sapindales | 6 | 51 | 101 | 237 |
Saxifragales | 1 | 2 | 2 | 4 |
Solanales | 2 | 8 | 10 | 17 |
Vitales | 1 | 5 | 6 | 8 |
Zingiberales | 2 | 6 | 6 | 6 |
Total | 113 | 496 | 857 | 1572 |
Family | Species | Infra-Variation (bp) |
---|---|---|
Euphorbiaceae | Croton acronychioides F. Muell. | 2 |
Malvaceae | Brachychiton australis (Schott & Endl.) A. Terracc. | 1 |
Monimiaceae | Wilkiea macrophylla (A.Cunn.) A. DC. | 1 |
Podocarpaceae | Podocarpus grayae de Laub. | 1 |
Rubiaceae | Everistia vacciniifolia (F. Muell.) S. T. Reynolds & R. J. F. Hend. | 4 |
Family | Species | Infra-Variation (bp) |
---|---|---|
Annonaceae | Goniothalamus australis Jessup | 1 |
Apocynaceae | Tabernaemontana pandacaqui Lam. | 4 |
Celastraceae | Hippocratea barbata F. Muell. | 2 |
Eupomatiaceae | Eupomatia laurina R. Br. | 1 |
Fabaceae | Archidendron ramiflorum (F. Muell.) Kosterm. | 1 |
Fabaceae | Acacia celsa Tindale | 2 |
Fabaceae | Castanospermum australe A. Cunn. ex Mudie | 8 |
Fabaceae | Entada phaseoloides (L.) Merr. | 13 |
Icacinaceae | Apodytes brachystylis F. Muell. | 2 |
Lauraceae | Cryptocarya lividula B. Hyland | 1 |
Lauraceae | Endiandra impressicosta C. K. Allen | 1 |
Lauraceae | Endiandra leptodendron B. Hyland | 1 |
Lauraceae | Cryptocarya bellendenkerana B. Hyland | 2 |
Lauraceae | Cryptocarya densiflora Blume | 5 |
Lauraceae | Endiandra insignis (F. M. Bailey) F. M. Bailey | 5 |
Lauraceae | Endiandra longipedicellata C. T. White & W. D. Francis | 5 |
Lauraceae | Beilschmiedia bancroftii (F. M. Bailey) C. T. White | 15 |
Malvaceae | Argyrodendron peralatum (F. M. Bailey) Edlin ex J. H. Boas | 1 |
Monimiaceae | Steganthera laxiflora (Benth.) Whiffin & Foreman | 4 |
Moraceae | Streblus glaber (Merr.) Corner | 1 |
Myristicaceae | Myristica globosa Warb. | 1 |
Myrtaceae | Syzygium johnsonii (F. Muell.) B. Hyland | 1 |
Myrtaceae | Syzygium kuranda (F. M. Bailey) B. Hyland | 1 |
Myrtaceae | Leptospermum wooroonooran F. M. Bailey | 2 |
Myrtaceae | Sphaerantia discolor Peter G. Wilson & B. Hyland | 4 |
Myrtaceae | Rhodamnia sessiliflora Benth. | 9 |
Phyllanthaceae | Glochidion sessiliflorum var. pedicellatum Airy Shaw | 7 |
Rhamnaceae | Emmenosperma cunninghamii Benth. | 1 |
Rubiaceae | Atractocarpus fitzalanii (F. Muell.) Puttock | 2 |
Rubiaceae | Atractocarpus hirtus (F. Muell.) Puttock | 2 |
Rutaceae | Melicope stipitata C. T. White & W. D. Francis | 2 |
Sapindaceae | Harpullia rhyticarpa C. T. White & W. D. Francis | 2 |
Sapindaceae | Diploglottis harpullioides S. T. Reynolds | 3 |
Sapindaceae | Sarcotoechia cuneata Radlk. | 3 |
Sapindaceae | Diploglottis smithii S. T. Reynolds | 5 |
Sapindaceae | Rhysotoechia robertsonii (F. Muell.) Radlk. | 6 |
Symplocaceae | Symplocos ampulliformis C. T. White | 5 |
Family | Species | Infra-Variation (bp) |
---|---|---|
Annonaceae | Miliusa traceyi Jessup | 2 |
Lauraceae | Endiandra longipedicellata C. T. White & W. D. Francis | 5 |
Malvaceae | Argyrodendron polyandrum L. S. Sm. | 1 |
Moraceae | Ficus variegata Blume | 2 |
Myrtaceae | Gossia retusa N. Snow & Guymer | 4 |
Myrtaceae | Rhodomyrtus macrocarpa Benth. | 4 |
Myrtaceae | Syzygium fibrosum (F. M. Bailey) T. G. Hartley & L. M. Perry | 1 |
Phyllanthaceae | Breynia cernua (Poir.) Mull. Arg. | 3 |
Proteaceae | Helicia australasica F. Muell. | 3 |
Rhamnaceae | Emmenosperma cunninghamii Benth. | 1 |
Rubiaceae | Ixora timorensis Decne. | 3 |
Rutaceae | Bosistoa brassii T. G. Hartley | 9 |
Rutaceae | Medicosma sessiliflora (C. T. White) T. G. Hartley | 9 |
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Costion, C.M.; Lowe, A.J.; Rossetto, M.; Kooyman, R.M.; Breed, M.F.; Ford, A.; Crayn, D.M. Building a Plant DNA Barcode Reference Library for a Diverse Tropical Flora: An Example from Queensland, Australia. Diversity 2016, 8, 5. https://doi.org/10.3390/d8010005
Costion CM, Lowe AJ, Rossetto M, Kooyman RM, Breed MF, Ford A, Crayn DM. Building a Plant DNA Barcode Reference Library for a Diverse Tropical Flora: An Example from Queensland, Australia. Diversity. 2016; 8(1):5. https://doi.org/10.3390/d8010005
Chicago/Turabian StyleCostion, Craig M., Andrew J. Lowe, Maurizio Rossetto, Robert M. Kooyman, Martin F. Breed, Andrew Ford, and Darren M. Crayn. 2016. "Building a Plant DNA Barcode Reference Library for a Diverse Tropical Flora: An Example from Queensland, Australia" Diversity 8, no. 1: 5. https://doi.org/10.3390/d8010005
APA StyleCostion, C. M., Lowe, A. J., Rossetto, M., Kooyman, R. M., Breed, M. F., Ford, A., & Crayn, D. M. (2016). Building a Plant DNA Barcode Reference Library for a Diverse Tropical Flora: An Example from Queensland, Australia. Diversity, 8(1), 5. https://doi.org/10.3390/d8010005