Search Results (741)

Seed oil represents a key trait in soybeans, which holds substantial economic significance, contributing to roughly 60% of global oilseed production. This research employed genome-wide association mapping to identify genetic loci associated with oil content in soybean seeds. A panel comprising 341 soybean accessions, primarily sourced from Northeast China, was assessed for seed oil content at Heilongjiang Province in three replications over two growing seasons (2021 and 2023) and underwent genotyping via whole-genome resequencing, resulting in 1,048,576 high-quality SNP markers. Phenotypic analysis indicated notable variation in oil content, ranging from 11.00% to 21.77%, with an average increase of 1.73% to 2.28% across all growing regions between 2021 and 2023. A genome-wide association study (GWAS) analysis revealed 119 significant single-nucleotide polymorphism (SNP) loci associated with oil content, with a prominent cluster of 77 SNPs located on chromosome 8. Candidate gene analysis identified four key genes potentially implicated in oil content regulation, selected based on proximity to significant SNPs (≤10 kb) and functional annotation related to lipid metabolism and signal transduction. Notably, Glyma.08G123500, encoding a receptor-like kinase involved in signal transduction, contained multiple significant SNPs with PROVEAN scores ranging from deleterious (−1.633) to neutral (0.933), indicating complex functional impacts on protein function. Additional candidate genes include Glyma.08G110000 (hydroxycinnamoyl-CoA transferase), Glyma.08G117400 (PPR repeat protein), and Glyma.08G117600 (WD40 repeat protein), each showing distinct expression patterns and functional roles. Some SNP clusters were associated with increased oil content, while others correlated with decreased oil content, indicating complex genetic regulation of this trait. The findings provide molecular markers with potential for marker-assisted selection (MAS) in breeding programs aimed at increasing soybean oil content and enhancing our understanding of the genetic architecture governing this critical agricultural trait. Full article

Germination and physical field treatments are processing techniques that have been successfully used to change the amount of active ingredients in flaxseed. However, it is unknown if they work synergistically. This study investigated the effect of microwave-assisted germination on the lignan concentration and antioxidant activity of several flaxseed tissue components. Lignans were primarily dispersed in the flaxseed seed coat. Microwave treatment and germination significantly affected the levels of lignans in various flaxseed sections. Flaxseed hulls’ lignan content and antioxidant activity could be increased by microwave treatment (130 W for 14 s) after germination of 0, 48, or 96 h. Flaxseed kernels lignan content and antioxidant activity could be increased by microwave treatment (130 W for 10 s) before germination. Whole flaxseeds could be improved by microwave treatment (130 W for 10 s) after germination for 72 h. The findings provided a theoretical basis for reducing the loss of lignan resources in flaxseed, enhancing its use as a functional food ingredient, and clarifying the targeted utilization of various lignan sources. Full article

Soil salinity adversely affects crop growth and development, leading to reduced soil fertility and agricultural productivity. The indigenous salt-tolerant plant growth-promoting rhizobacteria (PGPR), as a sustainable microbial resource, do not only promote growth and alleviate salt stress, but also improve the soil microecology of crops. The strain H5 isolated from saline-alkali soil in Bachu of Xinjiang was studied through whole-genome analysis, functional annotation, and plant growth-promoting, salt-tolerant trait gene analysis. Phylogenetic tree analysis and 16S rDNA sequencing confirmed its classification within the genus Halomonas. Functional annotation revealed that the H5 genome harbored multiple functional gene clusters associated with plant growth promotion and salt tolerance, which were critically involved in key biological processes such as bacterial survival, nutrient acquisition, environmental adaptation, and plant growth promotion. The pot experiment under moderate salt stress demonstrated that seed inoculation with Halomonas sp. H5 not only significantly improved the agronomic traits of tomato seedlings, but also increased plant antioxidant enzyme activities under salt stress. Additionally, soil analysis revealed H5 treatment significantly decreased the total salt (9.33%) and electrical conductivity (8.09%), while significantly improving organic matter content (11.19%) and total nitrogen content (10.81%), respectively (p < 0.05). Inoculation of strain H5 induced taxonomic and functional shifts in the rhizosphere microbial community, increasing the relative abundance of microorganisms associated with plant growth-promoting and carbon and nitrogen cycles, and reduced the relative abundance of the genera Alternaria (15.14%) and Fusarium (9.76%), which are closely related to tomato diseases (p < 0.05). Overall, this strain exhibits significant potential in alleviating abiotic stress, enhancing growth, improving disease resistance, and optimizing soil microecological conditions in tomato plants. These results provide a valuable microbial resource for saline soil remediation and utilization. Full article

Tomato processing waste (TPW) represents a valuable but underutilized by-product of the food industry with potential for valorization within bioeconomy models. This study investigated the chemical composition, antioxidant profile, and sanitary safety of TPW, analyzing the whole TPW; its fractions (peels and seeds) and oil are obtained from TPW seeds. All samples showed contaminant levels within regulatory limits, confirming their safety for further applications. Various drying methods (air-drying at 70 °C and at 50 °C, lyophilization and vacuum drying) and grinding intensities were evaluated to determine their impact on TPW bioactive compounds retention and organoleptic characteristics. TPW exhibited valuable nutritional properties, particularly high protein and dietary fiber content while TPW oil was characterized with high monounsaturated fatty acid content. Results demonstrated that drying method and particle size significantly influenced the yield of bioactive compound and organoleptic properties, with either lyophilization or vacuum drying and finer milling generally enhancing the recovery of polyphenols, β-carotene, and lycopene and improving color intensity. This research provides the first characterization of the TPW obtained from Croatian indigenous tomato varieties, establishing a scientific foundation for its sustainable valorization and, in broader terms, supporting circular economy objectives and contributing to more resource-efficient food systems. Full article

This study aimed to assess the use of selected raw materials, such as whole-grain oat flakes, pumpkin seeds, sunflower seeds, and flaxseeds, to obtain bars using baking and drying methods. Modifying the bars’ composition involved selecting the fibre preparation, replacing water with NFC juice, and using fresh apple juice and apple pomace. The Psyllium fibre preparation, also in the form of a mixture with apple fibre, was the most useful in dough cohesion and the quality of the bars. Baked bars were characterised by higher sensory quality than those obtained by drying. Microwave–convection drying was a good alternative to baking, primarily due to the lower temperature resulting in a lower acrylamide content and comparable product quality. The basic grain ingredients and fibre preparations mainly shaped the nutritional and energy value and the sensory and microbiological quality. Modifying the recipe using NFC or fresh juice and apple pomace allowed the bars to develop new properties and quality characteristics. The use of NFC juices resulted in a reduction in the pH of the bars, which is associated with a higher microbiological quality of the bars. All bars had low acrylamide content, significantly lower than the permissible level. Using fresh pomace or fibre preparations made from by-products is a possibility to increase the fibre content in the bars and a method of managing by-products. Full article

Isatis tinctoria L. (Brassicaceae), also known as woad or dyer’s woad, is an ancient plant with a rosy future ahead. Most of the knowledge about woad is related to indigo dye production and its medicinal applications, especially its leaves. The general interest in woad has decreased with the rise of petroleum-based products. However, nowadays this plant is attracting interest again with industries reintroducing natural dyes. To meet the market demand in a sustainable manner, recent studies have focused specifically on woad seeds, leading to a valorization of the whole woad plant. This review provides an overview of the botanical, phytochemical composition, and properties of woad seeds, primarily supporting their cosmetic and pharmaceutical potential. From a chemical point of view, woad seeds mainly contain fatty acids, amino acids, phytosterols and glucosinolates. These compounds have been investigated through their extraction and analytical methods, as well as their properties and industrial applications. Full article

Sideroxylon cinereum, an endemic Mauritian fruit, was investigated through comprehensive chemical analyses of solvent extracts from its pulp and seed. Dried fruit materials were subjected to maceration using water and organic solvents including methanol, ethanol, propanol, and acetone to obtain extracts of varying polarity. Preliminary phytochemical screening revealed the presence of several bioactive compounds, with pulp extracts generally richer in phytochemicals than seed extracts. UV-Vis and FTIR analyses confirmed key organic constituents, including sulfoxides in seeds. HPLC quantification showed notable citric acid content in the pulp (15.63 mg/g dry weight). Antioxidant assays indicated that organic solvent extracts of the pulp had superior free radical scavenging activity, while the seed’s aqueous extract exhibited the highest ferric reducing power. GC–MS profiling identified a diverse bioactive profile rich in terpenes, notably lanosterol acetate (>45% in both pulp and seeds). It is important to note that these findings are based on solvent extracts, which may differ from the phytochemical composition of the whole fruit as typically consumed. Among the extracts, aqueous fractions are likely the most relevant to dietary intake. Overall, the extracts of Sideroxylon cinereum pulp and seed show potential as sources of bioactive compounds for functional product development. Full article

Seed vigor testing traditionally requires large sample sizes and extended durations. The biospeckle laser (BSL) technique offers a faster, image-based alternative for seed analysis though the standardization of set protocols. This study evaluated the efficiency of local and global BSL analyses in bean seeds (Phaseolus vulgaris L.). Two groups of seeds (872 in total) were classified into high- and low-vigor seeds using the emergence test over 800 samples. The BSL test was then applied to 72 seeds (36 per group), analyzing biological activity locally (vascular and embryonic areas) and globally (whole image). BSL analysis detected significant differences between the groups (p < 0.05). Among the methods, the local analysis of the embryonic axis was most effective (F = 44.252, p = 0.000), showing a clearer distinction than the global analysis (F = 19.484, p = 0.000). The vascular area analysis did not yield significant results. These findings highlight the efficiency of the local BSL analysis at the embryonic axis for vigor tests compared to the global analysis. However, it was observed that the selected point in the local analysis affects the reliability of the vigor test. It was a relevant step toward standardization demanding additional tests in other species and varieties. Full article

KNOX genes play crucial roles in cell-fate determination and body plan specification during early embryogenesis. However, the specific gene structure and functional differentiation of KNOXs in Brassica napus is still unclear. We investigated KNOX genes in Brassica rapa (B. rapa), Brassica oleracea (B. oleracea), and Brassica napus (B. napus), which are polyploidy models with genome triplication after Arabidopsis-Brassiceae divergence. In total, 15, 14, and 32 KNOX genes were identified in B. rapa, B. oleracea, and B. napus, respectively. Phylogenetic analysis classified BnKNOXs (B. napus) into three classes with conserved domain organization. Synteny analysis indicated that BnKNOXs family expansion during allopolyploidization was mainly due to whole-gene and segmental duplications. Cis-element, gene structure, and expression pattern analyses showed high conservation within the same group. RNA-seq and qRT-PCR results divided BnKNOXs into three classes with distinct expression patterns: Class I exhibited moderate and specific expression in buds and inflorescence tips; Class III showed specific low expression in seeds and stamens; while the second class showed expression in most tissues. Sub-cellular localization results showed that the three candidate genes from the three classes exhibited distinct subcellular localizations, with BnSTM-C and BnKNAT3a-A predominantly in the nucleus and BnKNATM1-A in the cytoplasm indicating different expression patterns. Collectively, these findings provide a foundation for further functional studies of BnKNOX genes in B. napus. Full article

Nitrogen (N) critically regulates wheat growth and grain quality, yet the molecular mechanisms underlying foliar nitrogen application remain unclear. This study evaluated the effects of foliar nitrogen application (12.25 kg ha⁻¹) on the growth, grain yield, and quality of spring wheat, as well as its molecular mechanisms. The results indicated that N was absorbed within 3 h post-application, with leaf nitrogen concentration peaking at 12 h. The N treatment increased whole-plant dry matter accumulation and grain protein content by 11.34% and 6.8%, respectively. Amino acid content peaked 24 h post-application, increasing by 25.3% compared to the control. RNA-sequencing analysis identified 4559 and 3455 differentially expressed genes at 3 h and 24 h after urea treatment, respectively, these DEGs being primarily involved in nitrogen metabolism, photosynthetic carbon fixation, amino acid biosynthesis, antioxidant systems, and nucleotide biosynthesis. Notably, the plastidic glutamine synthetase gene (GS2) is crucial in the initial phase of urea application (3 h post-treatment). The pronounced downregulation of GS2 initiates a reconfiguration of nitrogen assimilation pathways. This downregulation impedes glutamine synthesis, resulting in a transient accumulation of free ammonia. In response to ammonia toxicity, the leaves promptly activate the GDH (glutamate dehydrogenase) pathway to facilitate the temporary translocation of ammonium. This compensatory mechanism suggests that GS2 downregulation may be a key switch that redirects nitrogen metabolism from the GS/GOGAT cycle to the GDH bypass. Additionally, the upregulation of the purine and pyrimidine metabolic routes channels nitrogen resources towards nucleic acid synthesis, and thereby supporting growth. Amino acids are then transported to the seeds, culminating in enhanced seed protein content. This research elucidates the molecular mechanisms underlying the foliar response to urea application, offering significant insights for further investigation. Full article

Auxin/induced-3-acetic acid (Aux/IAA) serves as a key regulator in the auxin signaling pathway of plants, which exhibits crucial functions in the development of plants. However, the Aux/IAA gene family has not yet been characterized in the genome of Castanea mollissima, an important food source in the Northern Hemisphere. During this research, 23 Aux/IAA genes were identified in the C. mollissima genome, which were unevenly distributed across seven chromosomes. CmAux/IAA genes were assigned to four subfamilies by phylogenetic analysis, and members of the same subfamily exhibited similar molecular characteristics. Collinear analysis revealed that the expansion of CmAux/IAA genes was primarily driven by whole-genome duplication (WGD) and purifying selection. The promoter regions of CmAux/IAA genes were enriched with development-related and hormone-related cis-acting elements, suggesting their crucial functions in the growth and hormonal regulation of C. mollissima. Upon the maturation of the seed kernels, the size and starch content exhibited a significant increasing trend, alongside notable changes in hormone levels. Given the connections between expression levels and physiological indicators, as well as weighted gene co-expression network analysis (WGCNA) analysis, CmIAA27a, CmIAA27b, and CmIAA27c were identified as potential regulators involved in the development of C. mollissima seed kernels. Furthermore, the reliability of the transcriptomic data was further confirmed by RT-qPCR experiments. Overall, this study provides a theoretical basis for the evolutionary expansion of the Aux/IAA gene family in C. mollissima, alongside its potential functions in seed kernel development. Full article

In the African Sahel, fonio (Digitaria sp.) is a cereal crop that alleviates mid-season hunger before other main crops are harvested. As fonio is valued for its ability to grow under low nutrient and drought conditions, it was hypothesized that it may contain endophytic bacteria that can tolerate such extreme stress. White fonio seeds were obtained from a dry environment (Mali) and a moderate rainfall environment (Guinea). Plants were grown indoors on field soil mixed with sand to mimic Sahelian soils, grown at 30 °C, and exposed to drought, optimal water, and low nitrogen stress conditions. In total, 73 cultured bacteria were classified using full-length 16S rRNA sequencing followed by searching three 16S reference databases. Selected strains were tested in vitro for tolerance to relevant abiotic stresses. Including nine isolates from seeds, the candidate root/shoot endophytes spanned 27 genera and 18–39 top-match species. Several well-known nitrogen-fixing bacteria were cultured, including Ensifer. Leaves were dominated by Bacilli (spore-formers known to withstand dry conditions). There were five root isolates of Variovorax. Leifsonia was isolated from the leaves and showed 100% sequence identity with seed isolates, suggestive of transmission from seed to shoot. In vitro experiments showed that seed isolates, including Leifsonia, survived diverse abiotic stresses relevant to the Sahel. Combined, these results suggest that white fonio hosts stress-tolerant microbiota, and points to Leifsonia as a candidate seed-to-plant transmitted endophyte, pending confirmation by future whole genome sequencing. This microbial collection serves as a starting point for long-term experiments to understand stress tolerance in this under-studied crop. Full article

Based on the complaints of malt barley growers about the insufficient control of rigid ryegrass (Lolium rigidum Gaudin) after applying the ACCase inhibitor pinoxaden, a survey was conducted during the early spring growing season of 2019/20; 20 barley fields located in Thessaloniki and 20 fields in Serres were marked with poor weed control levels. Before the barley harvest, representative weed seeds were collected from all 40 fields. After performing seed germination tests, fourteen populations (six from Thessaloniki and eight from Serres) with the highest seed germination ability were selected for further study. The whole-plant dose–response assays conducted in 2019–2020 indicated that most of the populations were multi-resistant to ACCase and ALS inhibitors. The estimated GR₅₀ values (the herbicide dose required to reduce the fresh weight of treated plants by 50%) for pinoxaden and mesosulfuron-methyl + iodosulfuron-methyl-sodium ranged from 1.15 to 52.41 g ai ha⁻¹ and 4.75 to 31.25 g ai ha⁻¹, respectively. Furthermore, the sequencing of acccase gene fragments from plants that survived pinoxaden application revealed that 11 out of 14 plant populations had a double accase point mutation at Ile1781 and Ile2041 codons. In addition, the sequencing of als gene fragments from the plants that survived mesosulfuron-methyl + iodosulfuron-methyl-sodium application revealed that 11 out of 14 plant populations had a point mutation at the Pro197 codon and 2 of them had a second als mutation at the Trp574 codon. These findings indicate that L. rigidum populations are multi-resistant to ACCase and ALS inhibitors, with individuals exhibiting either double accase or double als mutations. Full article

This work underlines an analogy between urban and biological systems. The dialogic approach of systems biology showed us that parts constitute a whole and, in turn, the whole constitutes the parts. The development of a biological system such as an animal or a plant does not unfold by means of an autonomous internal program. Rather, it stems from the interaction of the organism’s internal response pattern and its external environment. The wide scientific literature on the genome–environment interaction confirms this. Nevertheless, the scientific community still tends to consider the environment as a mere external factor which simply modulates the organism’s program. On the contrary, the environment has a key role in development. For example, when a seed germinates after heavy rain, it does not simply react to an external signal indicating favorable conditions for germination. Rather, it interacts directly with rainwater, which becomes a developmental factor no less important than the seed coat proteins. Similar to what happens during the development of an organism, the interface between any complex system and its environment determines its structural and functional fate. We argue that large cities have blurred the interface with their natural environment and depend on delocalized global sources. They are like organisms kept alive by external devices. Hence, we propose to regenerate a vital interface between cities and their rural and natural environment as the main and promising path towards future urban civilization. Full article

(1) Background: Lima beans (Phaseolus lunatus L.) are underutilized legumes rich in nutrients; however, they are limited by the presence of antinutritional content. In this study, we evaluated the effects of a low-cost germination treatment on the nutritional composition, antinutrient content, and digestibility of whole lima beans. (2) Methods: unlike previous studies focused on common legumes or isolated proteins, this work adopted a whole-seed approach and integrated multiple parameters to provide a comprehensive evaluation. (3) Results: The total polyphenol and flavonoid contents increased significantly, by 215.57 mg GAE/g and 71.84 mg RE/g, respectively, at 72 h of germination (p < 0.05). Antioxidant activity nearly doubled compared to raw beans, while the tannins and phytic acid content decreased significantly (p < 0.05). SDS-PAGE showed that germination enhanced digestibility by breaking down high-molecular-weight proteins into smaller fragments (15–30 kDa). Notably, samples germinated for 12–48 h showed higher digestibility after 2–3 h of limited proteolysis. (4) Conclusions: these findings indicate that germination effectively reduces antinutritional factors and improves digestibility, making processed lima beans a promising nutrient-dense ingredient for food formulations. Full article