Search Results (5,221)

Triplophysa siluroides, a unique species of plateau fish, holds significant economic value. However, its natural population has sharply declined due to overfishing and the construction of water conservancy projects. Investigating the various conditions necessary for its growth is a crucial prerequisite for successful artificial breeding. This study used Edwardsiella tarda as the pathogenic bacterium to determine the median lethal concentration following infection of T. siluroides, as well as to examine changes in tissues, organs, and gene expression. The study found that dead T. siluroides displayed symptoms such as abdominal distension, fluid accumulation, and a reddened anus, and the median lethal concentration of E. tarda for T. siluroides was calculated to be 1.00 × 10⁶ CFU/mL. Following infection with E. tarda, the liver, intestine, gills, spleen, and kidneys exhibited varying degrees of lesions. Transcriptome sequencing identified a total of 54,667 genes. Compared to the blank control group, 192 genes were downregulated and 125 genes were upregulated in T. siluroides infected with E. tarda. In contrast, after infection with the poly(I:C) viral mimic, 225 genes were downregulated and 436 genes were upregulated. This study determined the median lethal concentration of E. tarda for T. siluroides via intraperitoneal injection under laboratory conditions. The results may contribute to disease prevention and control in the breeding of T. siluroides, as well as inform future risk assessments of infection in aquaculture water bodies. Full article

Cyanobacterial species in the Arabian Peninsula region display a diverse range of potential biotechnological application. This review summarizes the cyanobacteria diversity found in the Peninsula region, the bioactive compounds found in these species, and the several health benefits and applications. The Arabian Peninsula region comprises a wide range of cyanobacteria with representatives from the orders Oscillatoriales, Chroococcales, Stigonematales, and Nostocales. These microorganisms produce specialized metabolites such as photosynthetic pigments, pigment–protein complexes, lipopeptides, phenolic compounds, and unique secondary metabolites. Many of the metabolites offer beneficial biological functions including antioxidants, antibacterial, anti-cancer, anti-inflammatory antiviral, and neuroprotective ones. In addition to the medical-related practices, cyanobacteria in the Peninsula region might have several other applications. Other probable uses include their potential bioremediation capability to remove pollutants or heavy metals, as a potential biohydrogen source for renewable energy, and as biofertilizers and soil enhancement to support sustainable agriculture; other useful applications include bioplastics production (polyhydroxyalkanoates), soil microbiota improvement, and methane reduction. The review highlights the potential diverse biotechnological applications of Arabian Peninsula cyanobacteria toward bioremediation, bioplastics, ecosystem regeneration, biofertilizers, bioenergy, and agro-sustainability, as well as human health. This review highlights the importance of the further exploration and exploitation of these resourceful microorganisms for sustainable development in the Arabian Peninsula region. Full article

Allium aralii Balos, Köse & Sonay sp. nov. (Amaryllidaceae, sect. Codonoprasum) is described as a new species from southeastern Anatolia, Türkiye. The species is morphologically distinguished from its closest relatives—A. euphraticum, A. turcicum subsp. turcicum, A. turcicum subsp. fusciflorum, and A. yilandaghense—by a unique combination of characters: blackish outer bulb tunics, semi-cylindrical solid leaves exceeding the inflorescence, an extremely long persistent two-valved spathe (4.5–28.0 cm), a lax hemispherical inflorescence (3–4 cm diam., 10–70 flowers), a goblet-shaped perigon with dentate inner tepals, exserted bicolored stamens (white at base and apex, purple in the middle), a reticulate-foveate ovary, and verrucate seed ornamentation with undulate anticlinal walls. Seed micromorphology examined by scanning electron microscopy (SEM) further supports species delimitation. Molecular phylogenetic analyses based on nuclear ITS and chloroplast matK sequences place A. aralii within a well-supported clade containing A. turcicum and allied species, corresponding to the eastern Mediterranean lineage of sect. Codonoprasum. ITS genetic distances between A. aralii and its morphologically closest relatives range 0.0632, falling within the typical interspecific range for Allium. The species is known from a single locality in Bozova district (Şanlıurfa) with fewer than 100 mature individuals and is assessed as Critically Endangered (CR) according to IUCN criteria. This discovery highlights southeastern Anatolia as an underexplored center of Allium diversification and underscores the importance of integrative taxonomy for species delimitation within this taxonomically complex group. Full article

Heliobacteraceae are unique endospore-forming photosynthetic bacteria that are known for possessing the simplest photosynthetic apparatus of any known organism. More genomic and physiological analysis is needed to further understand the evolution of photosynthesis and the unique metabolic pathways of nitrogen and sulfur metabolism in this family. Here, we present the genome and phylogenetic analysis of “Heliomicrobium sulfidophilum” strain BR4^T, which was isolated previously from an alkaline sulfide-containing hot spring. In addition to the presence of a Type I reaction center, genes for bacteriochlorophyll g synthesis and nitrogenase system, the genomic analysis also explains the need for biotin as a supplied growth factor in Heliomicrobium species. The Heliobacteriaceae genome comparison also revealed a previously unidentified gene cluster of heterodisulfide reductase-like proteins (Hdr genes) and molybdopterin-based enzymes for polysulfide reductase. The whole-genome comparison, including ANI, dDDH, and single-gene phylogenetic analyses, confirms the correct placement of strain BR4 in the Heliomicrobium genus and strengthens the overall phylogenetic distribution of the Heliobacteriaceae. Full article

This study investigates the volatile composition of twelve medicinal plant species belonging to the Lamiaceae family, which are widely recognized for their diverse biological activities, including antioxidant, antibacterial, and antifungal properties. Despite extensive studies on essential oils, comparative analyses using solvent-free techniques under different microclimatic conditions remain limited. This study investigates the volatile compounds in twelve medicinal plants from the Lamiaceae family using headspace solid-phase microextraction coupled with gas chromatography–mass spectrometry (HS-SPME/GC-MS). Lamiaceae plants are recognized for their diverse medicinal properties, including antioxidative, antibacterial, and antifungal effects. A total of 74 volatile compounds were identified, encompassing terpenes, alcohols, esters, aldehydes, and ketones. Notably, Lavandula spica L. exhibited the highest number of unique volatiles (28), while Melissa officinalis L. had the fewest (16). Key compounds included Citral (65.48%) in Melissa officinalis L., Menthol (33.37%) and Menthyl acetate (30.53%) in Mentha piperita L., Carvone (45.86%) in Mentha spicata L., and Eucalyptol (54.71%) in Origanum syriacum L. Plants from Adana Botanic Park were rich in terpenes and ketones, whereas those from Osmaniye contained higher levels of alcohols, aldehydes, and esters. The findings emphasize the impact of geographic location on volatile profiles and suggest avenues for further research into medicinal efficacy and optimal dosage. This study supports the sustainable use of plant biodiversity (SDG 15) and highlights the importance of bioactive compounds for human health and well-being (SDG 3). Full article

The aroma of camel milk is a key sensory indicator for evaluating its quality and flavor. Camel milk collected at different lactation stages exhibits unique flavor characteristics. However, no systematic study has yet explored the aroma characteristics and variation patterns of camel milk across these stages. This study employs HS-SPME-GC-MS, multivariate statistical analysis, and metagenomics to systematically reveal differences in aroma formation in camel milk across lactation periods and their interactions with microbial communities. A total of 577 metabolites is detected. Through OPLS-DA screening, 24 key differential flavor compounds are identified. ROAV analysis indicates that 2,4-undecadienal and (E)-2-undecenal are the main contributors to the fatty, creamy, fresh green, and citrus aromas of camel milk. Some compounds are more abundant in colostrum, while others are richer in mature milk. For microbiota, colostrum is dominated by Proteobacteria, Psychrobacter, and Janthinobacterium, whereas mature milk is dominated by Acinetobacter and Moraxella. Mature milk shows significantly higher alpha diversity and species richness. Spearman correlation analysis shows that core bacterial groups such as Enterococcus and Lactococcus are significantly positively correlated with characteristic flavor compounds, including aldehydes and lactones. This finding suggests that HS-SPME-GC-MS, combined with multivariate analysis, effectively distinguishes patterns associated with microbes and flavor metabolites in camel milk at different lactation stages, which provides a theoretical basis for quality control and further processing of camel milk. Full article

Background: As a transcription factor superfamily unique to plants, WRKY plays broad roles in both secondary development and secondary metabolic processes. Robinia pseudoacacia is renowned for its durable and naturally durable heartwood, which holds significant commercial value. However, their potential association with heartwood formation remains largely unexplored. Results: Leveraging published genomic data from Robinia pseudoacacia, we conducted a comprehensive bioinformatics analysis that identified 85 WRKY transcription factors. An uneven distribution across 11 chromosomes was observed for the RpWRKY genes, which were systematically named RpWRKY1 to RpWRKY85 according to their genomic locations, as determined by chromosomal localization. By conducting a phylogenetic comparison between RpWRKY and AtWRKY (from Arabidopsis thaliana), the RpWRKY family was categorized into three primary clades (I, II, and III), wherein group II was additionally partitioned into subgroups designated IIa through IIe. Conserved structural features and motif patterns were observed among members of each subgroup. Purifying selection was suggested by collinearity analysis as the primary evolutionary driver of RpWRKY, leading to structural and functional diversification. Finally, four candidate genes (RpWRKY78, RpWRKY45, RpWRKY50, RpWRKY80) potentially involved in heartwood formation regulation were identified through analysis of xylem tissue-specific expression patterns. Conclusions: For this economically important tree species, the present study not only provides the first systematic characterization of RpWRKY but also identifies potential regulators of heartwood development. Thus, the present study lays the groundwork for subsequent research aimed at uncovering the molecular processes that regulate heartwood development. Full article

Mycogenic nanomaterials, nanoparticles (NPs) biosynthesized through fungal enzymatic and metabolic activity, have emerged as a compelling alternative to chemically synthesized nanomaterials, offering fundamental biocompatibility, green production conditions, and biologically functional surface coatings. Fungi, acting as natural “nanofactories,” harness reductases, oxidoreductases, secreted proteins, and secondary metabolites to reduce metal ions into stable NPs under ambient conditions, simultaneously capping the particles with biomolecules that enhance colloidal stability, biocompatibility, and secondary biological activity. Unlike previous reviews that have addressed either biosynthesis mechanisms or applications in isolation, this review uniquely adopts a structured “Promise vs. Barrier” framework across six interconnected thematic pillars, offering the first comprehensive critical synthesis that simultaneously maps mechanistic frontiers, biodiversity gaps, and translational barriers within mycogenic nanotechnology. The present review critically examines both the extraordinary promise and the persistent barriers facing mycogenic nanotechnology across biosynthetic mechanisms, fungal biodiversity, nanomaterial portfolio expansion, biomedical applications, environmental and agricultural utility, and industrial scalability. We highlight how emerging multiomics approaches, integrating transcriptomics, proteomics, and metabolomics, are beginning to decode the molecular blueprints of fungal NP synthesis, while acknowledging that mechanistic knowledge gaps, limited genetic toolkits for non-model fungi, and the absence of standardized protocols continue to impede progress. The fungal kingdom represents a vast, underexplored reservoir of nanofactory potential, with fewer than 1% of known species evaluated to date; strategic bioprospecting using genome mining and machine learning is beginning to unlock this diversity. Mycogenic NPs demonstrate broad-spectrum antimicrobial activity against multidrug-resistant pathogens, selective anticancer activity, biosensing capacity, and applications in wound healing, sustainable agriculture, environmental remediation, and smart food packaging. However, critical deficits persist in clinical validation, long-term toxicity data, manufacturing reproducibility, and regulatory clarity. The review concludes with a tiered roadmap, spanning immediate mechanistic priorities through to long-term synthetic biology and AI-integrated commercialization, and calls for coordinated international action on standardization, reference material development, and harmonized regulatory frameworks to bridge the gap between laboratory promise and real-world application. Full article

The marine environment is an underutilised resource in probiotic research despite its potential for unique and beneficial microbes. Bacterial probionts derived from the ocean are emerging in the probiotic research field as an area of interest. Bacillus species (spp.) are Gram-positive, endospore-forming bacteria. Due to their unique resilience and their generally recognised as safe (GRAS) status, they have gained traction as putative probiotics. Existing large-scale reviews into the probiotic potential of Bacillus spp. have focused on terrestrial species, with limited attention given to marine-derived species. This review aims to address this gap by evaluating marine-derived Bacillus spp. with a focus on their diversity, origins, sources and demonstrated potential as probionts. Full article

Amaranth (Amaranthus spp.) is a multifaceted genus of C4 plants with significant nutritional and agronomic potential, yet it remains underutilized in mainstream agriculture. Despite growing interest in Amaranth, most germplasm studies have used either phenotypic or molecular approaches alone, lacking integration. Multivariate methods have not been systematically applied to identify promising genotypes, and species-specific selection indices for grain Amaranth remain unexplored. To address these gaps, this study comprehensively characterized 84 Amaranth genotypes representing multiple species (A. caudatus, A. cruentus, A. hypochondriacus, A. hybridus, A. spinosus, A. powellii, A. tricolor, and 38 accessions of unknown taxonomic status) using field experiments in a randomized complete block design with three replications and DNA barcoding with chloroplast (psbA-trnH) and nuclear (ITS) markers. Analysis of variance revealed highly significant differences (p < 0.01) among genotypes for all six agronomic traits evaluated, confirming substantial genetic variability with grain yield exhibiting the widest variation (CV = 28.55%), ranging from 0.25 to 125.56 g/plant. High broad-sense heritability estimates (0.79–0.99) coupled with high genetic advance, particularly for grain yield (117.54%), indicated that these traits would respond favorably to selection. Path analysis and stepwise regression identified early flowering, long inflorescences, and heavy seeds as the primary determinants of grain yield, collectively explaining 27% of yield variation. Mahalanobis D² analysis identified nine multivariate outliers with distinct phenotypic profiles, among which G39 emerged as the most promising breeding candidate, combining exceptional yield (90.50 g/plant) with desirable architecture, long inflorescence, and large seeds. Principal component analysis further resolved trait complexes, identifying 11 PC1-selected promising genotypes as donors for plant architecture and three PC2-selected promising genotypes as donors for seed size characteristics. Molecular analysis revealed distinct genetic relationships. A. caudatus (kiwicha) exhibited limited haplotype diversity indicating a narrow genetic base, while A. cruentus and A. hypochondriacus showed broader diversity, with the nuclear ITS network providing clearer resolution than chloroplast markers due to biparental inheritance. Outlier genotypes, including G82, G83, G13, G10, and G39, occupied unique haplotype positions, confirming that their phenotypic distinctiveness corresponds to genuine genetic differentiation. The novelty of this study lies in integrating multivariate biostatistical techniques (heritability, path analysis, Mahalanobis D², PCA, and stepwise regression) with two complementary DNA barcode systems (chloroplast and nuclear) within a single germplasm collection. This integrated approach provides breeders with well-characterized germplasm, validated selection criteria, and prioritized parental materials for Amaranth improvement. Further multi-location and multi-season evaluations are recommended to ensure the stability and adaptability of these promising germplasm accessions. Full article

Crete, a major Mediterranean biodiversity hotspot, hosts many local endemic, threatened and/or protected plant taxa (species and subspecies). Besides their ecological and conservation significance, these unique phytogenetic resources hold significant economic potential for sustainable utilization. Since DNA barcoding is critical for conservation, taxonomy, and plant-derived product authentication, we studied 15 local Cretan endemic taxa using three chloroplast DNA (cpDNA) regions (rbcL, trnL, trnH-psbA). A comparative analysis against GenBank (NCBI) records revealed significant new data: (i) the first genetic information for five taxa (Centaurea redempta subsp. redempta, Galium fruticosum, Micromeria hispida, Salix kaptarae, Teucrium cuneifolium); (ii) new marker-specific sequences for seven taxa (Helichrysum heldreichii, Scutellaria hirta, Sesleria doerfleri, Staehelina petiolata, Teucrium alpestre, Campanula pelviformis, Phlomis lanata); and (iii) novel genotypes of already represented markers for three species (Phlomis lanata, Scutellaria sieberi, Staehelina petiolata). Phylogenetic analyses were performed for all three molecular markers across selected members of Scutellaria section Scutellaria, Teucrium section Polium, and Campanula section Quinqueloculares. The overall results indicated that, amongst the studied species, the trnH-psbA marker is more suitable for species-level identification, whereas the rbcL and trnL markers were more helpful to genus-level identification within Lamiaceae and Campanulaceae. These results enrich the DNA barcoding reference library and form a concrete contribution towards the protection, conservation and traceability of Crete’s unique botanical heritage. Full article

The Nipponia nippon is a critically endangered species, and its breeding efforts are of vital importance for its conservation. Although artificial shell removal is sometimes employed in current breeding programs to increase survival rates, it may also have unknown impacts on chicks’ development. To investigate the influence of artificial shell removal on the gut microbiota composition in Nipponia nippon, metagenomic sequencing and untargeted LC-MS/MS analyses were performed. Samples from the early, mid, and late stages of natural hatching (ZE, ZM, ZL) and artificial shell removal (RE, RM, RL) were compared. Results indicated that the natural hatching groups formed a unique, highly diverse, and stable community by the late stage (ZL). Conversely, artificial peeling caused the microbial community succession to stagnate at an intermediate state. The RL group experienced a sharp decline in alpha diversity and a significant enrichment of opportunistic pathogens, such as Edwardsiella, Clostridium, and Fusobacterium. Functionally, the microbial community in the RL group remained in a stage of expanding basic functions rather than reaching an advanced equilibrium state. Metabolomic analysis confirmed this developmental arrest, revealing abnormal accumulations of organic acids, such as citric acid, and indole derivatives in the RL group. This indicates metabolic dysregulation, stress, and altered microbial–host chemical signaling. Furthermore, the significant biomarker Edwardsiella was strongly correlated with multiple differential metabolites in the RL group. Ultimately, these results indicate that artificial peeling intervention disrupts environmental adaptation and induces metabolic alterations in the intestinal development of the Nipponia nippon chicks. Full article

Antibiotic-induced dysbiosis disrupts gut microbiome diversity and functionality, often leading to negative health outcomes, including reduced short-chain fatty acid production, increased susceptibility to opportunistic pathogens, and an increased number of bacterial colonies exhibiting antibiotic resistance. This study investigates the effects of prebiotics (inulin-type fructans) and probiotic supplementation on microbiome recovery in a murine model. Broad spectrum antibiotics induced near-total microbiome depletion, significantly reducing microbial diversity and metabolite production. Prebiotic supplementation demonstrated superior efficacy during recovery in restoring microbiome diversity (~180 species), improving microbiome diversity metrics, and promoting metabolites, particularly butyrate and valerate, compared to probiotics or unmanipulated recovery. While effective in suppressing opportunistic bacterial growth, probiotics significantly delayed total microbial diversity recovery and resulted in lower diversity metrics (~50 species). However, prebiotic-treated microbiomes exhibited a wider antibiotic resistance profile in culturable bacteria, highlighting prebiotics’ unique impact on the resistome. These findings underscore the potential of prebiotics for recovery from gut dysbiosis while emphasizing the need for further research to address safety considerations regarding their impacts on antibiotic resistance. Importance: This study explores the impact of prebiotic vs. probiotic manipulation of the microbiome in an antibiotic-induced dysbiosis mouse model. Our data demonstrate that prebiotics are more efficacious at enhancing total diversity and limiting the expansion of potentially harmful opportunist bacteria. This is the first study to indicate that prebiotics increase the number of culturable bacterial colonies resistant to antibiotics. These results contribute to our understanding of microbiome manipulation to promote health and limit disease. Full article

Background/Objectives: The wall-associated kinases (WAKs) and WAK-like proteins (WAKLs) comprise a unique receptor-like kinase subfamily in plants, which have been shown to regulate plant development and defense responses by sensing cell wall-derived components, such as pectin or pectin fragments. In this study, we aimed to characterize the function of WAKL10 in flg22-triggered immunity in Arabidopsis. Methods: Through functional analyses of WAKL genes in Arabidopsis, we identified WAKL10 as the most pronouncedly induced WAKL member in response to flg22 treatment. Gain- and loss-of-function genetic analyses were performed to assess its role in flg22-triggered immune responses, including mitogen-activated protein kinase (MAPK) activation, reactive oxygen species (ROS) burst, and defense gene induction. Transgenic Arabidopsis plants expressing a kinase domain-deleted mutant (WAKL10-ΔK) were generated. Co-immunoprecipitation assays were conducted to examine interactions with FLAGELLIN-SENSITIVE 2 (FLS2) and BRI1-ASSOCIATED RECEPTOR KINASE 1 (BAK1). Heterologous overexpression of WAKL10 in tomato was also tested for bacterial disease resistance. Results: WAKL10 positively regulates flg22-triggered immune responses. Interestingly, WAKL10-ΔK retains the capacity to potentiate these responses. Co-immunoprecipitation assays showed that both wild-type WAKL10 and WAKL10-ΔK constitutively associate with FLS2 and BAK1. Overexpression of WAKL10 in tomato confers enhanced bacterial disease resistance. Conclusions: The extracellular domain of WAKL10 promotes FLS2-BAK1 complex formation, thereby contributing to flg22 signaling. This study reveals a new function of WAKLs, distinguished from their proposed role in sensing cell wall components. The functional conservation of WAKL10 suggests its potential application in engineering disease resistance in crop plants. Full article

A quantitative NMR assay was utilized to identify methylglyoxal-scavenging natural products from Rhodophytes, Chondrus crispus and Gracilaria vermiculophylla. This revealed the activity of guanylurea-containing amino acid derivatives, gongrine and gigartinine. The molecules share structural features with the frontline blood glucose-lowering drug and plant natural product derivative, metformin, and scavenge methylglyoxal via the same mechanism, resulting in an imidazole-containing Advanced Glycation Endproduct or AGE. The protective effect of the molecules reported here was evaluated in a cell-based model for reactive aldehyde stress using methylglyoxal exposure to reduce cell viability. Gongrine, gigartinine, and metformin all preserve cell viability in HepG2 following methylglyoxal exposure. This is the first report of methylglyoxal scavenging and cell viability protection of these macroalgae-derived guanylurea-containing natural products, which can be found in high abundance in commonly consumed and industrially produced macroalgae species. The compounds presented here, along with their algal sources, offer a unique opportunity to produce guanylureas with therapeutic potential through sustainable production methods from easily cultivated algal sources. Full article