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Keywords = tropical conservation

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15 pages, 7500 KiB  
Article
Large-Scale Spatiotemporal Patterns of Burned Areas and Fire-Driven Mortality in Boreal Forests (North America)
by Wendi Zhao, Qingchen Zhu, Qiuling Chen, Xiaohan Meng, Kexu Song, Diego I. Rodriguez-Hernandez, Manuel Esteban Lucas-Borja, Demetrio Antonio Zema, Tong Zhang and Xiali Guo
Forests 2025, 16(8), 1282; https://doi.org/10.3390/f16081282 - 6 Aug 2025
Abstract
Due to climate effects and human influences, wildfire regimes in boreal forests are changing, leading to profound ecological consequences, including shortened fire return intervals and elevated tree mortality. However, a critical knowledge gap exists concerning the spatiotemporal dynamics of fire-induced tree mortality specifically [...] Read more.
Due to climate effects and human influences, wildfire regimes in boreal forests are changing, leading to profound ecological consequences, including shortened fire return intervals and elevated tree mortality. However, a critical knowledge gap exists concerning the spatiotemporal dynamics of fire-induced tree mortality specifically within the vast North American boreal forest, as previous studies have predominantly focused on Mediterranean and tropical forests. Therefore, in this study, we used satellite observation data obtained by the Moderate Resolution Imaging Spectroradiometer (MODIS) Aqua and Terra MCD64A1 and related database data to study the spatial and temporal variability in burned area and forest mortality due to wildfires in North America (Alaska and Canada) over an 18-year period (2003 to 2020). By calculating the satellite reflectance data before and after the fire, fire-driven forest mortality is defined as the ratio of the area of forest loss in a given period relative to the total forest area in that period, i.e., the area of forest loss divided by the total forest area. Our findings have shown average values of burned area and forest mortality close to 8000 km2/yr and 40%, respectively. Burning and tree loss are mainly concentrated between May and September, with a corresponding temporal trend in the occurrence of forest fires and high mortality. In addition, large-scale forest fires were primarily concentrated in Central Canada, which, however, did not show the highest forest mortality (in contrast to the results recorded in Northern Canada). Critically, based on generalized linear models (GLMs), the results showed that fire size and duration, but not the burned area, had significant effects on post-fire forest mortality. Overall, this study shed light on the most sensitive forest areas and time periods to the detrimental effects of forest wildfire in boreal forests of North America, highlighting distinct spatial and temporal vulnerabilities within the boreal forest and demonstrating that fire regimes (size and duration) are primary drivers of ecological impact. These insights are crucial for refining models of boreal forest carbon dynamics, assessing ecosystem resilience under changing fire regimes, and informing targeted forest management and conservation strategies to mitigate wildfire impacts in this globally significant biome. Full article
(This article belongs to the Special Issue Forest Disturbance and Management)
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19 pages, 1447 KiB  
Article
Soil Quality Indicators for Different Land Uses in the Ecuadorian Amazon Rainforest
by Thony Huera-Lucero, Antonio Lopez-Piñeiro and Carlos Bravo-Medina
Forests 2025, 16(8), 1275; https://doi.org/10.3390/f16081275 - 4 Aug 2025
Abstract
Deforestation and land-use changes lead to significant soil degradation and erosion, particularly in Amazonian ecosystems, due to the region’s climate and geology. This study characterizes soil quality using physical, chemical, and biological parameters across different land uses. It uses a soil quality index [...] Read more.
Deforestation and land-use changes lead to significant soil degradation and erosion, particularly in Amazonian ecosystems, due to the region’s climate and geology. This study characterizes soil quality using physical, chemical, and biological parameters across different land uses. It uses a soil quality index (SQI) based on a minimum data set (MDS), from 19 evaluated parameters. The land uses evaluated were cacao monoculture (CMC), agroforestry systems associated with fruit and timber species (FAFS and TAFS, respectively), and a secondary forest. The SQI was composed of six variables, bulk density (BD), soil organic matter (SOM), urease activity (UR), pH, dehydrogenase activity (DH), and leaf litter, which are considered relevant indicators that allow for an adequate evaluation of soil quality. According to the SQI assessment, FAFS has a moderate-quality rating (0.40), followed by secondary forest (0.35), TAFS (0.33), and CMC (0.30), the last three categorized as low-quality. The methods used are replicable and efficient for evaluating changes in soil properties based on different land uses and management systems in landscapes similar to those of the Ecuadorian Amazon. Also worth mentioning is the potential of agroforestry as a sustainable land-use strategy that can enhance above- and below-ground biodiversity and nutrient cycling. Therefore, implementing agroforestry practices can contribute to long-term soil conservation and the resilience of tropical ecosystems. Full article
(This article belongs to the Special Issue Forest Soil Physical, Chemical, and Biological Properties)
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13 pages, 9267 KiB  
Article
Curcuma nivea (Zingiberaceae), a New Compact Species with Horticultural Potential from Eastern Thailand
by Piyaporn Saensouk, Surapon Saensouk, Charun Maknoi, Det Song and Thawatphong Boonma
Horticulturae 2025, 11(8), 908; https://doi.org/10.3390/horticulturae11080908 (registering DOI) - 4 Aug 2025
Viewed by 46
Abstract
The genus Curcuma (Zingiberaceae) is a diverse group of plants widely distributed across tropical Asia, with several new species recently described in Thailand. This study documents and clarifies the taxonomic status of a new species, Curcuma nivea Saensouk, P.Saensouk & Boonma sp. nov., [...] Read more.
The genus Curcuma (Zingiberaceae) is a diverse group of plants widely distributed across tropical Asia, with several new species recently described in Thailand. This study documents and clarifies the taxonomic status of a new species, Curcuma nivea Saensouk, P.Saensouk & Boonma sp. nov., discovered in eastern Thailand, and evaluates its horticultural potential. Morphological comparisons were conducted with closely related species in the Curcuma subgenus Hitcheniopsis (Baker) K. Schum., focusing on diagnostic vegetative and floral traits. Curcuma nivea is characterized by its compact habit and white flowers marked with two reddish lines at the base of the labellum, lacking the yellow blotch typical of related species. Additionally, it shows the absence of both epigynous glands and anther spurs, consistent with subgeneric features. Its distinctive morphology and attractive floral display have led to its cultivation as an ornamental pot plant. The discovery of C. nivea contributes to the growing documentation of Curcuma diversity in Thailand and underscores the significance of ongoing botanical exploration and conservation. Furthermore, its compact form and unique floral traits highlight its promise for use in ornamental horticulture and breeding programs. Full article
(This article belongs to the Section Medicinals, Herbs, and Specialty Crops)
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19 pages, 1721 KiB  
Article
Demography and Biomass Productivity in Colombian Sub-Andean Forests in Cueva de los Guácharos National Park (Huila): A Comparison Between Primary and Secondary Forests
by Laura I. Ramos, Cecilia M. Prada and Pablo R. Stevenson
Forests 2025, 16(8), 1256; https://doi.org/10.3390/f16081256 - 1 Aug 2025
Viewed by 498
Abstract
Understanding species composition and forest dynamics is essential for predicting biomass productivity and informing conservation in tropical montane ecosystems. We evaluated floristic, demographic, and biomass changes in eighteen 0.1 ha permanent plots in the Colombian Sub-Andean forest, including both primary (ca. 60 y [...] Read more.
Understanding species composition and forest dynamics is essential for predicting biomass productivity and informing conservation in tropical montane ecosystems. We evaluated floristic, demographic, and biomass changes in eighteen 0.1 ha permanent plots in the Colombian Sub-Andean forest, including both primary (ca. 60 y old) and secondary forests (ca. 30 years old). Two censuses of individuals (DBH ≥ 2.5 cm) were conducted over 7–13 years. We recorded 516 species across 202 genera and 89 families. Floristic composition differed significantly between forest types (PERMANOVA, p = 0.001), and black oak (Trigonobalanus excelsa Lozano, Hern. Cam. & Henao) forests formed distinct assemblages. Demographic rates were higher in secondary forests, with mortality (4.17% yr), recruitment (4.51% yr), and relative growth rate (0.02% yr) exceeding those of primary forests. The mean aboveground biomass accumulation and the rate of annual change were higher in primary forests (447.5 Mg ha−1 and 466.8 Mg ha−1 yr−1, respectively) than in secondary forests (217.2 Mg ha−1 and 217.2 Mg ha−1 yr−1, respectively). Notably, black oak forests showed the greatest biomass accumulation and rate of change in biomass. Annual net biomass production was higher in secondary forests (8.72 Mg ha−1 yr−1) than in primary forests (5.66 Mg ha−1 yr−1). These findings highlight the ecological distinctiveness and recovery potential of secondary Sub-Andean forests and underscore the value of multitemporal monitoring to understand forest resilience and assess vulnerability to environmental change. Full article
(This article belongs to the Special Issue Forest Inventory: The Monitoring of Biomass and Carbon Stocks)
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15 pages, 6769 KiB  
Article
Pine Cones in Plantations as Refuge and Substrate of Lichens and Bryophytes in the Tropical Andes
by Ángel Benítez
Diversity 2025, 17(8), 548; https://doi.org/10.3390/d17080548 - 1 Aug 2025
Viewed by 176
Abstract
Deforestation driven by plantations, such as Pinus patula Schiede ex Schltdl. et Cham., is a major cause of biodiversity and functional loss in tropical ecosystems. We assessed the diversity and composition of lichens and bryophytes in four size categories of pine cones, small [...] Read more.
Deforestation driven by plantations, such as Pinus patula Schiede ex Schltdl. et Cham., is a major cause of biodiversity and functional loss in tropical ecosystems. We assessed the diversity and composition of lichens and bryophytes in four size categories of pine cones, small (3–5 cm), medium (5.1–8 cm), large (8.1–10 cm), and very large (10.1–13 cm), with a total of 150 pine cones examined, where the occurrence and cover of lichen and bryophyte species were recorded. Identification keys based on morpho-anatomical features were used to identify lichens and bryophytes. In addition, for lichens, secondary metabolites were tested using spot reactions with potassium hydroxide, commercial bleach, and Lugol’s solution, and by examining the specimens under ultraviolet light. To evaluate the effect of pine cone size on species richness, the Kruskal–Wallis test was conducted, and species composition among cones sizes was compared using multivariate analysis. A total of 48 taxa were recorded on cones, including 41 lichens and 7 bryophytes. A total of 39 species were found on very large cones, 37 species on large cones, 35 species on medium cones, and 24 species on small cones. This is comparable to the diversity found in epiphytic communities of pine plantations. Species composition was influenced by pine cone size, differing from small in comparison with very large ones. The PERMANOVA analyses revealed that lichen and bryophyte composition varied significantly among the pine cone categories, explaining 21% of the variance. Very large cones with specific characteristics harbored different communities than those on small pine cones. The presence of lichen and bryophyte species on the pine cones from managed Ecuadorian P. patula plantations may serve as refugia for the conservation of biodiversity. Pine cones and their scales (which range from 102 to 210 per cone) may facilitate colonization of new areas by dispersal agents such as birds and rodents. The scales often harbor lichen and bryophyte propagules as well as intact thalli, which can be effectively dispersed, when the cones are moved. The prolonged presence of pine cones in the environment further enhances their role as possible dispersal substrates over extended periods. To our knowledge, this is the first study worldwide to examine pine cones as substrates for lichens and bryophytes, providing novel insights into their potential role as microhabitats within P. patula plantations and forest landscapes across both temperate and tropical zones. Full article
(This article belongs to the Section Microbial Diversity and Culture Collections)
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22 pages, 6172 KiB  
Article
Ethnomedicinal Properties of Wild Edible Fruit Plants and Their Horticultural Potential Among Indigenous Isan Communities in Roi Et Province, Northeastern Thailand
by Piyaporn Saensouk, Surapon Saensouk, Thawatphong Boonma, Auemporn Junsongduang, Min Khant Naing and Tammanoon Jitpromma
Horticulturae 2025, 11(8), 885; https://doi.org/10.3390/horticulturae11080885 (registering DOI) - 1 Aug 2025
Viewed by 220
Abstract
Wild edible fruit plants are integral to the cultural, nutritional, medicinal, and economic practices of Indigenous Isan communities in Roi Et Province, northeastern Thailand, a region characterized by plateau and lowland topography and a tropical monsoon climate. This study aimed to document the [...] Read more.
Wild edible fruit plants are integral to the cultural, nutritional, medicinal, and economic practices of Indigenous Isan communities in Roi Et Province, northeastern Thailand, a region characterized by plateau and lowland topography and a tropical monsoon climate. This study aimed to document the diversity, traditional uses, phenology, and conservation status of these species to inform sustainable management and conservation efforts. Field surveys and ethnobotanical interviews with 200 informants (100 men, 100 women; random ages) were conducted across 20 local communities to identify species diversity and usage patterns, while phenological observations and conservation assessments were performed to understand reproductive cycles and species vulnerability between January and December 2023. A total of 68 species from 32 families were recorded, with peak flowering in March–April and fruiting in May–June. Analyses of Species Use Value (0.19–0.48) and Relative Frequency of Citation (0.15–0.44) identified key species with significant roles in food security and traditional medicine. Uvaria rufa had the highest SUV (0.48) and RFC (0.44). Informant consensus on medicinal applications was strong for ailments such as gastrointestinal and lymphatic disorders. Economically important species were also identified, with some contributing notable income through local trade. Conservation proposed one species as Critically Endangered and several others as Vulnerable. The results highlight the need for integrated conservation strategies, including community-based initiatives and recognition of Other Effective area-based Conservation Measures (OECMs), to ensure the preservation of biodiversity, traditional knowledge, and local livelihoods. Full article
(This article belongs to the Section Medicinals, Herbs, and Specialty Crops)
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19 pages, 2237 KiB  
Article
Flood Season Division Model Based on Goose Optimization Algorithm–Minimum Deviation Combination Weighting
by Yukai Wang, Jun Li and Jing Fu
Sustainability 2025, 17(15), 6968; https://doi.org/10.3390/su17156968 - 31 Jul 2025
Viewed by 186
Abstract
The division of the flood season is of great significance for the precise operation of water conservancy projects, flood control and disaster reduction, and the rational allocation of water resources, alleviating the contradiction of the uneven spatial and temporal distribution of water resources. [...] Read more.
The division of the flood season is of great significance for the precise operation of water conservancy projects, flood control and disaster reduction, and the rational allocation of water resources, alleviating the contradiction of the uneven spatial and temporal distribution of water resources. The single weighting method can only determine the weight of the flood season division indicators from a certain perspective and cannot comprehensively reflect the time-series attributes of the indicators. This study proposes a Flood Season Division Model based on the Goose Optimization Algorithm and Minimum Deviation Combined Weighting (FSDGOAMDCW). The model uses the Goose Optimization Algorithm (GOA) to solve the Minimum Deviation Combination model, integrating weights from two subjective methods (Expert Scoring and G1) and three objective methods (Entropy Weight, CV, and CRITIC). Combined with the Set Pair Analysis Method (SPAM), it realizes comprehensive flood season division. Based on daily precipitation data of the Nandujiang River (1961–2022), the study determines its flood season from 1 May to 30 October. Comparisons show that: ① GOA converges faster than the Genetic Algorithm, stabilizing at T = 5 and achieving full convergence at T = 24; and ② The model’s division results have the smallest Intra-Class Differences, avoiding indistinguishability between flood and non-flood seasons under special conditions. This research aims to support flood season division studies in tropical islands. Full article
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14 pages, 1727 KiB  
Article
Endemic Species of Butterflies: Importance of Protected Areas in Tropical Montane Endemism Conservation
by Mónica Higuera-Díaz, Andrea León-Parra and Giovanny Fagua
Diversity 2025, 17(8), 536; https://doi.org/10.3390/d17080536 - 31 Jul 2025
Viewed by 230
Abstract
Protected areas play a key role in containing and protecting most of the endemic biodiversity of megadiverse places, underscoring their importance as custodians of biological richness. Colombia, one of the most species-rich countries, also has one of the highest rates of deforestation globally. [...] Read more.
Protected areas play a key role in containing and protecting most of the endemic biodiversity of megadiverse places, underscoring their importance as custodians of biological richness. Colombia, one of the most species-rich countries, also has one of the highest rates of deforestation globally. The Colombian National Natural Parks (NNPs) system is one of the mechanisms for protecting natural landscape ecosystems and biota. Based on the role of butterflies as bioindicators in biodiversity mapping, we compiled records of endemic butterfly species from entomological collections and the literature to assess the importance of protected areas in endemic species conservation. The NNPs harbor records of 127 endemic species, representing 65% of the 196 endemic butterfly species recorded in Colombia. Most of these endemic species, 93 species, have been recorded in only one NNP, here defined as “unique” species. These species are mainly distributed along the Andes Cordillera. Among all the NNPs, Sierra Nevada de Santa Marta holds the highest number of both total and unique endemic species. Extrapolating this pattern to the broader Andean Biota supports the idea that protected areas play a key role in containing and protecting much of Northern South American endemic biodiversity, underscoring their importance as custodians of biological richness. Full article
(This article belongs to the Special Issue Diversity, Biodiversity, Threats and Conservation of Arthropods)
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16 pages, 1285 KiB  
Article
The Physiological Cost of Being Hot: High Thermal Stress and Disturbance Decrease Energy Reserves in Dragonflies in the Wild
by Eduardo Ulises Castillo-Pérez, Angélica S. Ensaldo-Cárdenas, Catalina M. Suárez-Tovar, José D. Rivera-Duarte, Daniel González-Tokman and Alex Córdoba-Aguilar
Biology 2025, 14(8), 956; https://doi.org/10.3390/biology14080956 - 29 Jul 2025
Viewed by 204
Abstract
Anthropogenic disturbance alters macro- and microclimatic conditions, often increasing ambient temperatures. These changes can strongly affect insects, particularly those experiencing high thermal stress (i.e., large differences between body and environmental temperature), as prolonged exposure to elevated temperatures can reduce their energetic reserves due [...] Read more.
Anthropogenic disturbance alters macro- and microclimatic conditions, often increasing ambient temperatures. These changes can strongly affect insects, particularly those experiencing high thermal stress (i.e., large differences between body and environmental temperature), as prolonged exposure to elevated temperatures can reduce their energetic reserves due to increased metabolic demands and physiological stress. We evaluated thermal stress in 16 insect dragonfly species during two sampling periods (2019 and 2022) in preserved and disturbed sites within a tropical dry forest in western Mexico. Also, we compared energetic condition (lipid and protein content) and thoracic mass for the seven most abundant species between both habitat types. In preserved sites, insects showed higher thermal stress at lower maximum temperatures, which decreased as temperatures increased. Dragonflies in disturbed sites maintained consistent levels of thermal stress across the temperature gradient. Thermal stress was linked to lower lipid and protein content, and individuals from disturbed sites had reduced energy reserves. We also found a weak but consistent positive relationship between mean ambient temperature and protein content. In preserved sites, thoracic mass increased with thermal stress, but only at high mean temperatures. These findings suggest that although species can persist in disturbed environments, their energetic condition may be compromised, potentially affecting their performance and fitness. Preserving suitable habitats is essential for preserving both biodiversity and ecological function. Full article
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16 pages, 1101 KiB  
Article
Nutritional Characterization of Fruits from Three African Plant Species: Dialium guineense Willd, Parkia biglobosa Jacq. and Andansonia digitata L.
by Manuela Lageiro, Jaime Fernandes, Ana C. Marques, Manuela Simões and Ana Rita F. Coelho
Plants 2025, 14(15), 2344; https://doi.org/10.3390/plants14152344 - 29 Jul 2025
Viewed by 274
Abstract
Dialium guineense (velvet tamarind), Parkia biglobosa Jacq. (African locust bean) and Adanosonia digitata L. (baobab) are fruits from African plants whose nutritional potential remains poorly characterised. As such, their pulps and seeds were analysed for colour (CIELab system), moisture, ash, protein, fat, soluble [...] Read more.
Dialium guineense (velvet tamarind), Parkia biglobosa Jacq. (African locust bean) and Adanosonia digitata L. (baobab) are fruits from African plants whose nutritional potential remains poorly characterised. As such, their pulps and seeds were analysed for colour (CIELab system), moisture, ash, protein, fat, soluble and insoluble dietary fibre, free sugars (HPLC-RI), organic acids (HPLC-PDA), macro and microelements (XRF analyser) and amygdalin (HPLC-PDA). The colours of their pulps differed considerable (ΔE > 38 between the velvet tamarind and African locust bean) and the moisture content was lower in seeds (about 7%) compared to pulps (9–13%). Seeds were more concentrated in protein (20–28%) and fat (5–22%), whereas pulps were richer in sugar (1–12%). African locust bean pulp was the sweetest (39% total sugar), while baobab pulp contained the highest soluble fibre (>30%) and citric acid (3.2%), and velvet tamarind pulp was distinguished by its tartaric acid content (3.4%). Seeds of the African fruits presented higher Ca, P, S and Fe contents, whereas pulps had higher K content. No amygdalin (<6.34 mg per 100 g of dry weight) or toxic heavy metal contents were detected. The PCA segregated samples by pulp and seed and the PC1 explains the sugar and moisture of the pulps, while protein, fat and minerals are associated with the seeds. These data confirm that African fruit pulps and seeds have distinct functional profiles, are safe for food use and can be consumed, which is important for efforts to promote the conservation of these tropical plant species. Full article
(This article belongs to the Section Plant Nutrition)
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17 pages, 7301 KiB  
Article
Environmental Analysis for the Implementation of Underwater Paths on Sepultura Beach, Southern Brazil: The Case of Palythoa caribaeorum Bleaching Events at the Global Southern Limit of Species Distribution
by Rafael Schroeder, Lucas Gavazzoni, Carlos E. N. de Oliveira, Pedro H. M. L. Marques and Ewerton Wegner
Coasts 2025, 5(3), 26; https://doi.org/10.3390/coasts5030026 - 28 Jul 2025
Viewed by 205
Abstract
Recreational diving depends on healthy marine ecosystems, yet it can harm biodiversity through species displacement and habitat damage. Bombinhas, a biodiverse diving hotspot in southern Brazil, faces growing threats from human activity and climate change. This study assessed the ecological structure of Sepultura [...] Read more.
Recreational diving depends on healthy marine ecosystems, yet it can harm biodiversity through species displacement and habitat damage. Bombinhas, a biodiverse diving hotspot in southern Brazil, faces growing threats from human activity and climate change. This study assessed the ecological structure of Sepultura Beach (2018) for potential diving trails, comparing it with historical data from Porto Belo Island. Using visual censuses, transects, and photo-quadrats across six sampling campaigns, researchers documented 2419 organisms from five zoological groups, identifying 14 dominant species, including Haemulon aurolineatum and Diplodus argenteus. Cluster analysis revealed three ecological zones, with higher biodiversity at the site’s edges (Groups 1 and 3), but these areas also hosted endangered species like Epinephelus marginatus, complicating trail planning. A major concern was the widespread bleaching of the zoanthid Palythoa caribaeorum, a key ecosystem engineer, likely due to rising sea temperatures (+1.68 °C from 1961–2018) and declining chlorophyll-a levels post-2015. Comparisons with past data showed a 0.33 °C increase in species’ thermal preferences over 17 years, alongside lower trophic levels and greater ecological vulnerability, indicating tropicalization from the expanding Brazil Current. While Sepultura Beach’s biodiversity supports diving tourism, conservation efforts must address coral bleaching and endangered species protection. Long-term monitoring is crucial to track warming impacts, and adaptive management is needed for sustainable trail development. The study highlights the urgent need to balance ecotourism with climate resilience in subtropical marine ecosystems. Full article
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24 pages, 5785 KiB  
Article
Phylogenetic Reassessment of Murinae Inferred from the Mitogenome of the Monotypic Genus Dacnomys Endemic to Southeast Asia: New Insights into Genetic Diversity Erosion
by Zhongsong Wang, Di Zhao, Wenyu Song and Wenge Dong
Biology 2025, 14(8), 948; https://doi.org/10.3390/biology14080948 - 28 Jul 2025
Viewed by 325
Abstract
The Millard’s rat (Dacnomys millardi), a threatened murid endemic to Southeast Asian montane rainforests and the sole member of its monotypic genus, faces escalating endangered risks as a Near Threatened species in China’s Biodiversity Red List. This ecologically specialized rodent exhibits [...] Read more.
The Millard’s rat (Dacnomys millardi), a threatened murid endemic to Southeast Asian montane rainforests and the sole member of its monotypic genus, faces escalating endangered risks as a Near Threatened species in China’s Biodiversity Red List. This ecologically specialized rodent exhibits diagnostic morphological adaptations—hypertrophied upper molars and cryptic pelage—that underpin niche differentiation in undisturbed tropical/subtropical forests. Despite its evolutionary distinctiveness, the conservation prioritization given to Dacnomys is hindered due to a deficiency of data and unresolved phylogenetic relationships. Here, we integrated morphological analyses with the first complete mitogenome (16,289 bp in size; no structural rearrangements) of D. millardi to validate its phylogenetic placement within the subfamily Murinae and provide novel insights into genetic diversity erosion. Bayesian and maximum likelihood phylogenies robustly supported Dacnomys as sister to Leopoldamys (PP = 1.0; BS = 100%), with an early Pliocene divergence (~4.8 Mya, 95% HPD: 3.65–5.47 Mya). Additionally, based on its basal phylogenetic position within Murinae, we propose reclassifying Micromys from Rattini to the tribe Micromyini. Codon usage bias analyses revealed pervasive purifying selection (Ka/Ks < 1), constraining mitogenome evolution. Genetic diversity analyses showed low genetic variation (CYTB: π = 0.0135 ± 0.0023; COX1: π = 0.0101 ± 0.0025) in fragmented populations. We propose three new insights into this genetic diversity erosion. (1) Evolutionary constraints: genome-wide evolutionary conservation and shallow evolutionary history (~4.8 Mya) limited mutation accumulation. (2) Anthropogenic pressures: deforestation-driven fragmentation of habitats (>20,000 km2/year loss since 2000) has reduced effective population size, exacerbating genetic drift. (3) Ecological specialization: long-term adaptation to stable niches favored genomic optimization over adaptive flexibility. These findings necessitate suitable conservation action by enforcing protection of core habitats to prevent deforestation-driven population collapses and advocating IUCN reclassification of D. millardi from Data Deficient to Near Threatened. Full article
(This article belongs to the Section Genetics and Genomics)
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2 pages, 133 KiB  
Correction
Correction: Kularatna et al. Comparative Growth of Elephant Ear Taro (Alocasia macrorrhiza) and Giant Swamp Taro (Cyrtosperma merkusii) in Hawai‘i. Crops 2024, 4, 55–71
by Thathmini D. Kularatna, Norman Q. Arancon and Jesse A. Eiben
Crops 2025, 5(4), 48; https://doi.org/10.3390/crops5040048 - 28 Jul 2025
Viewed by 80
Abstract
In the original publication [...] Full article
21 pages, 9690 KiB  
Article
Comparative Transcriptomic Analysis for Identification of Environmental-Responsive Genes in Seven Species of Threadfin Breams (Nemipterus)
by Zhaoke Dang, Qiaer Wu, Yanbo Zhou, Liangming Wang, Yan Liu, Changping Yang, Manting Liu, Qijian Xie, Cheng Chen, Shengwei Ma and Binbin Shan
Int. J. Mol. Sci. 2025, 26(15), 7118; https://doi.org/10.3390/ijms26157118 - 23 Jul 2025
Viewed by 247
Abstract
Members of the genus Nemipterus are economically important fish species distributed in the tropical and subtropical Indo-West Pacific region. The majority of species in this genus inhabit waters with sandy–muddy substrates on the continental shelf, although different species are found at slightly varying [...] Read more.
Members of the genus Nemipterus are economically important fish species distributed in the tropical and subtropical Indo-West Pacific region. The majority of species in this genus inhabit waters with sandy–muddy substrates on the continental shelf, although different species are found at slightly varying water depths. In this study, we sequenced seven species within the genus Nemipterus after identifying the specimens using complementary morphological analysis and DNA barcoding. Each species yielded over 40,000,000 clean reads, totaling over 300,000,000 clean reads across the seven species. A total of 276,389 unigenes were obtained after de novo assembly and a total of 168,010 (60.79%) unigenes were annotated in the protein database. The comprehensive functional annotation based on the KOG, GO, and KEGG databases revealed that these unigenes are mainly associated with numerous physiological, metabolic, and molecular processes, and that the seven species exhibit similarity in these aspects. By constructing a phylogenetic tree and conducting divergence time analysis, we found that N. bathybius and N. virgatus diverged most recently, approximately during the Neogene Period (14.9 Mya). Compared with other species, N. bathybius and N. virgatus are distributed in deeper water layers. Therefore, we conducted selection pressure analysis using these two species as the foreground branches and identified several environmental-responsive genes. The results indicate that genes such as aqp1, arrdc3, ISP2, Hip, ndufa1, ndufa3, pcyt1a, ctsk, col6a2, casp2 exhibit faster evolutionary rates during long-term adaptation to deep-water environments. Specifically, these genes are considered to be associated with adaptation to aquatic osmoregulation, temperature fluctuations, and skeletal development. This comprehensive analysis provides valuable insights into the evolutionary biology and environmental adaptability of threadfin breams, contributing to the conservation and sustainable management of these species. Full article
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21 pages, 2472 KiB  
Article
Threats and Opportunities for Biodiversity Conservation and Sustainable Use in the Buffer Zones of National Parks in the Brazilian Cerrado
by Ana Cristina da Silva Soares, Edson Eyji Sano, Fabiana de Góis Aquino and Tati de Almeida
Sustainability 2025, 17(14), 6597; https://doi.org/10.3390/su17146597 - 19 Jul 2025
Viewed by 435
Abstract
In recent decades, the Brazilian Cerrado has faced rapid land conversion, resulting in the loss of approximately half of its original vegetation cover. Most existing conservation units within the biome are increasingly threatened by the expansion of land use around their boundaries. The [...] Read more.
In recent decades, the Brazilian Cerrado has faced rapid land conversion, resulting in the loss of approximately half of its original vegetation cover. Most existing conservation units within the biome are increasingly threatened by the expansion of land use around their boundaries. The establishment of buffer zones with land use regulations may protect biodiversity within these protected areas. In this study, we evaluated and ranked the 10 km buffer zones of 15 national parks (NPs) located in the Cerrado biome, identifying their priority for biodiversity conservation and sustainable land use interventions. The analysis considered the following data: land use and land cover change from 2012 to 2020, extent of natural vegetation fragments, presence or absence of state and municipal conservation units within the buffer zones, and drainage density. Two multicriteria analysis methods, the analytic hierarchy process and the weighted linear combination, were applied to classify the buffer zones into five levels of threat: very high, high, moderate, low, and very low. Among the 15 buffer zones analyzed, 11 were classified as having high to very high priority for conservation actions. The buffer zones surrounding the Serra da Bodoquena, Emas, Canastra, and Brasília NPs were ranked as having very high priority. Between 2012 and 2020, the most severe reductions in ecological connectivity were observed in the buffer zones of Grande Sertão Veredas (44.5%), Nascentes do Rio Parnaíba (40.4%), and Serra das Confusões (36.7%). Given the relatively high proportion of natural vegetation in the buffer zones located in the northern Cerrado, we recommend prioritizing conservation efforts in this region. In contrast, in the southern portion of the biome, where land occupation is more intense, strategies should focus on promoting environmentally sustainable land use practices. Full article
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