Search Results (2,743)

Members of the genus Rhizobium are best known for nitrogen-fixing symbioses with legumes, yet their diversity and evolutionary roles in non-legume hosts remain poorly explored, particularly in arid ecosystems. We report the isolation and characterization of strain AGC32, an endophytic bacterium obtained from surface-sterilized roots of the desert medicinal plant Peganum harmala collected in Moroccan drylands. Phylogenomic analyses placed AGC32 within the genus Rhizobium but clearly distinct from described species, with average nucleotide identity values below 96% and digital DNA–DNA hybridization values below 70%, supporting its designation as a novel species for which the name Rhizobium moroccans sp. nov. is proposed. Comparative genomics revealed extensive structural genome rearrangements relative to its closest sequenced relative, Rhizobium deserti, indicating a divergent evolutionary trajectory. The high-quality draft genome encodes metabolic pathways associated with adaptation to nutrient limitation and environmental stress, including complete allantoin utilization, polyphosphate metabolism, organic acid assimilation, and multiple systems involved in oxidative and osmotic stress tolerance. Phenotypic assays corroborated these genomic predictions, demonstrating the ability to metabolize diverse organic acids and carbohydrates and to express multiple plant growth–promoting traits, including nitrogen fixation and the solubilization of phosphorus, potassium, and silicon. Collectively, these findings expand the ecological and evolutionary diversity of Rhizobium, demonstrate its capacity to associate with non-legume medicinal plants in extreme environments, and highlight desert ecosystems as reservoirs of previously unrecognized microbial diversity with potential applications in sustainable agriculture in arid regions. Full article

Clostridium butyricum is a well-known Gram-positive, spore-forming, obligate anaerobic, and butyrate-producing bacterium with a few species of next-generation probiotic strains. By far, the most well-known strain is Clostridium butyricum CBM588 (also known as MIYAIRI 588). This strain has gained significant attention for its therapeutic potential across a variety of human health conditions. Preclinical studies have shown its ability to stabilize gut microbiota, enhance short-chain fatty acid (SCFA) production, and modulate immune responses, which contribute to its therapeutic effects in conditions such as ulcerative colitis, allergies, and cancer. We examined 28 interventional clinical trials and 7 observational studies investigating the effect of Clostridium butyricum strains. These studies have supported the findings of preclinical trials and demonstrated symptom improvement and immune modulation in diverse conditions. Clostridium butyricum CBM588 has shown efficacy in managing gastrointestinal diseases, such as acute gastroenteritis and inflammatory bowel disease, and has also proven beneficial in immune modulation, as evidenced by its positive effects in allergic rhinitis and cancer immunotherapy. Additionally, CBM588 has been reported to have a favorable safety and tolerability profile in various patient populations, including children, adults, and critically ill patients. Despite these promising results, clinical studies face limitations such as small sample sizes, varied protocols, and short study durations. Future well-designed, large-scale trials are necessary to further validate the long-term safety and efficacy of Clostridium butyricum in clinical practice. Full article

The skin’s physiological response to repetitive stress is not well understood in prosthesis users. Improving this understanding could facilitate the design of a diagnostic tool to determine if the skin is adapting to tolerate stress from a prosthetic socket. The objective of this research was to develop a physical system that mechanically stresses the skin in a controlled manner and then implements the imaging modalities of infrared (IR) imaging and optical coherence tomography (OCT). IR imaging characterizes the skin’s temperature response, while OCT characterizes vessel diameter changes over time in the skin. The system was implemented in a single individual with a transtibial amputation. The system reliably maintained the force profile throughout testing. IR and OCT imaging were initiated after load application, and all curves demonstrated an initial rise in temperature immediately after load removal followed by a decrease towards baseline. The system was able to effectively detect a peak outcome (temperature and vessel area) with both imaging modalities. The system’s ability to maintain the loading throughout and begin imaging to capture the peak provides promise for expanded use to better understand the skin’s physiological response to loading in prosthesis users. This improved understanding may better inform treatment strategies to optimize patient outcomes. Full article

Species distribution models (SDMs) are widely used to define climatic constraints on species ranges, yet their ability to reflect demographic processes remains poorly understood. We integrated annually calibrated SDMs (1981–2005) with tree-ring width data from 15 European forest species in the Iberian Peninsula to evaluate if climatic suitability mirrors tree growth, particularly for populations at their climatic tolerance limits. Our results show that higher suitability consistently relates to reduced growth decline, acting as a reliable proxy for forest vigor. Notably, interannual variability in climatic suitability was positively associated with growth, suggesting that climatic fluctuations may enhance physiological resilience. We also found that Mediterranean species exhibit higher growth sensitivity to climatic suitability changes than Eurosiberian species. These findings demonstrate that SDMs can capture functional constraints beyond mere presence, positioning annual climatic suitability as a key predictor of radial growth and offering valuable insights for forest management under climate change. Full article

In the post-antibiotic era, the Bacillus-based direct-fed beneficial microorganisms are emerging as a cornerstone for sustainable animal farming. This study aimed to screen and evaluate Bacillus strains with probiotic potential for use as feed additives. A total of 394 Bacillus strains were initially screened based on their extracellular enzyme production (cellulase, protease, and amylase) and antibacterial activities against Escherichia coli, Staphylococcus aureus, and Salmonella enterica. Two strains, Bacillus velezensis FJAT-10508 and FJAT-13563, were selected and subsequently subjected to in vitro probiotic characterization, safety assessment, and whole-genome analysis. The results demonstrated that both strains exhibited α-hemolysis, acceptable antibiotic susceptibility profiles, absence of invasion and cytotoxicity effect on the Caco-2 cells, and no mobile virulence or antibiotic resistance genes, indicating their safety as probiotic candidates. High endospore-forming efficiencies (72.4–90.8%), strong auto-aggregation (74–85%) and co-aggregation abilities (52–82%) were observed. In addition, both strains showed considerable tolerance to simulated gastrointestinal conditions, with vegetative cell and endospore survival rates of 28.33–38.33% and 85–89.67% at pH 2.0, and 38.33–43.33% and 90.33–96.33% in 0.3% bile salts, respectively. Overall, B. velezensis FJAT-10508 and FJAT-13563 demonstrated robust in vitro probiotic properties, supporting their potential application as reliable Bacillus-based feed additives. Full article

Bacteria adapted to elevated temperatures are commonly associated with geothermal environments and are recognized for their functional diversity. In this study, cultivable bacteria were isolated from a geothermal spring in northern Sinaloa, Mexico, and characterized through physicochemical analysis, molecular identification, growth kinetics, and functional screening. The isolates were identified as Bacillus licheniformis (strains J1, J3, and J8) and Brevibacillus borstelensis (strains J6 and J9). Growth analyses showed that, in nutrient broth at 45 °C, the evaluated strains exhibited specific growth rates ranging from 1.25 to 1.78 h⁻¹ and short doubling times between 23 and 33 min, with B. borstelensis J6 displaying the highest rate. At 50 °C, μmax values ranged from 0.77 to 1.08 h⁻¹, indicating sustained growth at elevated temperatures. Functional assays demonstrated extracellular proteolytic, amylolytic, and cellulolytic activities, mainly associated with B. licheniformis strains, in addition to tolerance to the pesticides fluazinam and benomyl. Antagonistic tests showed that B. licheniformis J8 inhibited the phytopathogenic fungi Sclerotinia sclerotiorum and Sclerotium rolfsii, while qualitative mineral solubilization assays indicated the ability of selected isolates to mobilize phosphate and potassium. These findings highlight geothermal ecosystems as valuable reservoirs of thermotolerant bacteria with enzymatic versatility and environmental relevance, supporting further molecular and process-optimization studies. Full article

Acinetobacter baumannii is a leading cause of healthcare-associated infections and is classified among the highest-priority antimicrobial-resistant pathogens. Its clinical success reflects the convergence of antimicrobial resistance (AMR) and biological traits that promote environmental persistence and transmission. Acinetobacter baumannii has undergone a remarkable transformation over the past few decades, evolving from a relatively obscure environmental bacterium into a globally recognized multidrug-resistant pathogen. Its prevalence in healthcare settings, particularly intensive care units, has made it a leading cause of ventilator-associated pneumonia, bloodstream infections, wound infections, and urinary tract infections. Beyond its antibiotic resistance, the bacterium’s ability to persist in hospital environments and adapt to host defences has amplified its clinical significance. Recent research has uncovered complex networks of virulence factors, regulatory systems, and metabolic strategies that enable A. baumannii to thrive in hostile environments and evade host immunity, providing new insights into its pathogenesis and potential therapeutic vulnerabilities. This review summarizes the main mechanisms underlying its pathogenicity, including desiccation tolerance, biofilm formation, disinfectant resistance, metal acquisition, motility, and the ability to enter viable but non-culturable states. In A. baumannii, AMR functions as a pathogenesis-adjacent trait, enhancing survival and clonal dissemination through genomic plasticity, resistance islands, efflux systems, and envelope remodeling. Key resistance pathways involve carbapenem-hydrolyzing oxacillinases, metallo-β-lactamases, permeability defects, and multidrug efflux, often coexisting within high-risk clones. From a clinical perspective, management of carbapenem-resistant strains requires accurate infection diagnosis, reliable susceptibility testing, site-specific and PK/PD-optimized therapy, and early reassessment. Overall, the success of A. baumannii reflects the integration of resistance and persistence within healthcare ecosystems, highlighting the need for coordinated strategies combining stewardship, infection control, improved diagnostics, and anti-biofilm or anti-virulence approaches. Full article

Phytoremediation is increasingly recognized as a sustainable and low-impact approach for the remediation of contaminated and marginal soils, particularly when combined with the cultivation of resilient non-food crops. Castor bean (Ricinus communis L.) is a multipurpose industrial oilseed crop characterized by high biomass production, strong tolerance to abiotic stresses, and a remarkable ability to accumulate and tolerate potentially toxic elements. This review provides a comprehensive overview of the role of castor bean in phytoremediation systems, integrating agronomic management, physiological traits, traditional and industrial uses, and sustainability perspectives. Particular attention is given to agronomic practices that enhance plant establishment and remediation efficiency on contaminated lands. Beyond its environmental role, this review highlights the long-standing traditional uses of castor oil and the growing importance of castor bean as an energy and industrial crop, supplying renewable feedstocks for biofuels, bio-based chemicals, and materials within a circular economy framework. While genetic improvement and molecular tools offer future opportunities to optimize specific traits, the current potential of castor bean relies largely on its agronomic adaptability and multifunctionality. Overall, R. communis emerges as a strategic species for integrated phytoremediation systems that couple soil restoration with renewable resource production and sustainable land management. Full article

Ferulic acid, a derivative of hydroxycinnamic acid, is a potent antioxidant used in dermatology for its ability to neutralize reactive oxygen species and stabilize vitamins C and E. Its multidirectional action includes photoprotection, anti-inflammatory effects, and inhibition of melanogenesis. The study aimed to quantitatively evaluate the impact of 20% ferulic acid peels on skin barrier function, sebum level, pH, and biomechanical properties (elasticity). A group of 18 subjects underwent a series of three treatments. Objective skin parameters were measured. Assessments were conducted at baseline and 14 days post-treatment. A statistically significant increase in stratum corneum hydration was observed on the cheek. Barrier function improved significantly, with transepidermal water loss (TEWL) decreasing in both analyzed areas. Biomechanical analysis revealed a statistically significant improvement in elasticity (R2 parameter) on the cheek and forehead (p < 0.05). Ferulic acid has the potential to improve epidermal hydration and support the skin’s permeability barrier, as evidenced by reduced TEWL. The stability of skin pH suggests high tolerability, confirming ferulic acid as an effective therapeutic agent for mature and sensitive skin. Full article

Soil cadmium (Cd) contamination is a persistent threat to global food security, requiring sustainable in situ remediation strategies. While hyperaccumulating plants possess specialized traits for metal extraction, their low biomass limits large-scale application. This study investigates the potential of a core endophytic synthetic community (SynCom-NS)—characterized by heavy metal tolerance and growth-promoting traits, originally derived from the hyperaccumulator Sedum alfredii—by assessing its ability to modulate the remediation phenotype of a high-biomass non-host crop, Brassica juncea. Pot experiments revealed that SynCom-NS root-zone application significantly alleviated Cd toxicity, increasing total fresh weight by 82% and chlorophyll content by 33%. Crucially, the consortium bypassed the “growth-dilution” trade-off, facilitating a 4.07-fold increase in shoot Cd accumulation. Multi-omics analysis demonstrated a systemic modulation of the host’s defense machinery, marked by a >3-fold surge in glutathione (GSH) levels and the induction of phenylpropanoid biosynthesis for cell wall reinforcement. SynCom-NS application also mediated tissue-specific regulation of the key metal transporter HMA4, upregulating its expression in roots to accelerate long-distance translocation while downregulating it in shoots. These findings demonstrate that specialized core microbiomes function as potent bio-inoculants, offering a promising biological strategy for engineering high-efficiency phytoremediation systems. Full article

Imine reductases (IREDs) have emerged as valuable biocatalysts for the asymmetric synthesis of chiral amines, key intermediates in numerous active pharmaceutical ingredients. Their ability to operate under mild reaction conditions with high chemo- and stereoselectivity provides an attractive alternative to conventional metal-catalyzed or chemical reduction processes. However, the broader industrial application of wild-type IREDs is often constrained by their limited substrate scope and moderate catalytic efficiency. Recent advances in biocatalysis have demonstrated that engineered IREDs can catalyze the reduction of a wide range of natural and non-natural imines, significantly expanding their applicability in pharmaceutical and fine chemical synthesis. In parallel, enzyme immobilization strategies have proven highly effective for improving operational stability, facilitating enzyme reuse, and enabling continuous flow biocatalytic processes. Efficient cofactor regeneration systems have further enhanced the practical implementation of IRED-based transformations. Advances in protein engineering, including structure-guided design, semi-rational mutagenesis, and directed evolution, have generated enzyme variants with improved catalytic activity, stereoselectivity, and substrate tolerance. The integration of high-throughput screening technologies and machine-learning-assisted enzyme design has further accelerated the discovery and optimization of efficient IRED biocatalysts. This review summarizes recent progress in the protein engineering and immobilization of IREDs and discusses future perspectives for their industrial application. Full article

The formulation of rhizobial bioinoculants remains a critical bottleneck for the large-scale deployment of biological nitrogen fixation in sustainable agriculture, mainly due to limitations in the stability and viability of conventional liquid products. In this study, a spray-drying-based process was developed and optimized to produce a stable and functional bioinoculant using Ensifer meliloti Rm8530, an EPS II–producing strain with enhanced stress tolerance. Strain robustness was evaluated through thermal and osmotic stress assays, together with growth performance across relevant temperature and pH ranges. Six carrier-based formulations combining polysaccharides and proteins were then tested under controlled spray-drying conditions. Process performance was assessed in terms of powder recovery, residual moisture, bacterial survival, yield, and storage stability over 16 weeks. The morphological integrity of spray-dried particles and rehydrated cells was analyzed by scanning electron microscopy. The biological functionality of selected formulations was subsequently validated in planta using alfalfa as a host model. Among the formulations tested, a mixed alginate–gum Arabic matrix showed the best overall balance between process efficiency, post-drying viability, long-term stability, and symbiotic performance. Spray-dried cells retained the ability to induce nodulation and support early plant responses under the conditions evaluated. These results demonstrate that spray drying, combined with appropriate strain selection and formulation design, constitutes a viable and scalable platform for producing stable, functional rhizobial bioinoculants. Full article

The surrounding soil in mining areas generally suffers from severe pollution, characterized primarily by multi-metal contamination, and poses significant challenges in restoration and safe utilization. Therefore, it is urgent to explore low-cost restoration and safe utilization technologies that can achieve simultaneous treatment and utilization. This study selected a typical lead-zinc mining area in eastern Yunnan, China, where there is severe heavy metal pollution. It collected 15 common varieties of castor plants and systematically studied their absorption, accumulation, translocation, and removal characteristics of four heavy metal elements (Cd, Pb, Cu, Zn). The results showed that the heavy metal pollution in the mining area was extremely severe. Castor plants have a strong tolerance to heavy metal stress. There were significant differences in the absorption and accumulation of heavy metals among different castor varieties. The root parts mainly accumulated Pb, the stem parts mainly accumulated Cd, and the seeds had a higher ability to accumulate Cu. In terms of restoration potential, the Tong Castor No. 24, Fen Castor No. 10, and Zi Castor No. 3 plants had relatively large restoration potential. However, considering both biomass and heavy metal removal capacity, Dian Castor No, 2 Zi Castor No. 3, Dian Castor No. 5 plants were more ideal and could be applied in the restoration of heavy metal complex pollution soil in mining areas. Full article

Despite recent advances in artificial intelligence for agriculture, reliable crop recommendation remains constrained by limited access to soil diagnostics, insufficient integration of environmental context, and the absence of transparent, quantitative evaluation frameworks. This study addresses the research question: How can we integrate multiple indicators to generate accurate, explainable, and context-sensitive crop recommendations? To this end, we propose a multimodal decision-support framework that combines image-based soil texture classification with geospatial, and climatic information. A convolutional neural network was trained on a curated dataset of 3250 soil images aggregated from four publicly available sources, covering four primary soil texture classes, alongside tabular soil and nutrient data. The model was evaluated using 5-fold stratified cross-validation, achieving an average classification accuracy of 99.30% (standard deviation ≈ 0.66), and was further validated on an independent hold-out test set to assess generalization performance. To enhance practical applicability, the framework incorporates elevation, rainfall, temperature, and major soil nutrients, and employs a large language model to generate user-oriented, interpretable justifications for each recommendation. Crop recommendations were quantitatively evaluated using a novel Agronomic Suitability Score (ASS), which measures alignment across soil compatibility, climatic suitability, seasonal alignment, and elevation tolerance. Across six geographically diverse case studies, the framework achieved mean ASS values ranging from 3.76 to 4.96, with five regions exceeding 4.45, demonstrating strong agronomic validity, robustness, and scalability. A Streamlit-based application further illustrates the system’s ability to deliver accessible, location-aware, and explainable agronomic guidance. The results indicate that the proposed approach constitutes a scalable decision-support tool with significant potential for sustainable agriculture and food security initiatives. Full article

Lubricating oil (LO) is manufactured in various formulations for different applications. The inappropriate disposal of petroleum hydrocarbons can increase soil contamination, promoting deleterious environmental and human health impacts. More specifically, following prolonged exposure, LO contaminants are known to have carcinogenic and neurotoxic effects in humans. Bioremediation provides an effective and attractive strategy to expedite the clean-up processes of LO contaminants. We isolated and identified environmentally adapted strains of Pseudomonas aeruginosa, Pseudomonas putida, and Proteus vulgaris from Houston watershed bayou soils. Interestingly, all three exhibited increased resistance, vis-a-vis surrogate strains, to various antibiotic challenges (of chloramphenicol, tetracycline, kanamycin, penicillin, streptomycin, etc.) and increased biofilm formation ranging from 1.6 to 6.7-fold. In fact, all three environmental strains were significantly better at producing enhanced biofilm formation in the presence of spent LO rather than clean LO as well as outproducing biofilm made by the surrogate strains. Finally, the environmental isolates P. aeruginosa, P. putida, and P. vulgaris demonstrated an enhanced ability to sequester clean (2-, 2.5- and 1.14-fold) and spent (1.4-, 1.5, and 1.2-fold) LO when compared to their commercially acquired surrogate reference strains. Our three environmentally isolated organisms from Houston watershed soils appeared to be environmentally adapted to tolerate LO exposures. In the presence of LOs, all three environmentally isolated strains exhibited enhanced growth, enhanced biofilm production, and improved bioaccumulation of LOs relative to commercial reference strains. Taken together, environmentally adapted organisms can promote the bioremediation of contaminants threatening our environment and, potentially, human health. Full article