Search Results (39)

The Lateral Organ Boundaries Domain (LBD) gene family encodes plant-specific transcription factors that play pivotal roles in growth, development, and stress responses. However, a comprehensive genome-wide analysis of the LBD family in watermelon (Citrullus lanatus) has not been conducted until now. In this study, we identified 39 ClLBD genes using the latest watermelon reference genome and systematically analyzed the function of ClLBD2 in root development. These ClLBDs are unevenly distributed across 10 chromosomes except Chr4. Evolutionary analysis grouped the gene family members into six subgroups: Class I (a–e) and Class II. Physicochemical properties and gene structure analysis showed that the ClLBD protein members are tightly conserved. In the promoter regions of ClLBD genes, we identified abundant cis-acting regulatory elements related to abiotic stress and hormone responses. Through RNA-seq analysis from a cucurbit database, we found that several ClLBD genes showed high relative expression in roots, with ClLBD2 being the most highly expressed. Since its subfamily includes AtLBD25, a known root development-related gene, we hypothesized that ClLBD2 might be involved in root development. To validate this, ClLBD2-edited roots were generated using the CRISPR-Cas9 system and Agrobacterium rhizogenes-mediated transformation. Compared to the wild type, the ClLBD2 edited roots exhibited significant reduction in taproot length and lateral root numbers, indicating that ClLBD2 may regulate root development. This study provides the first comprehensive analysis of the LBD gene family in watermelon, offering valuable insights for evolutionary and further functional studies of ClLBD genes. Full article

The transplanted cotton–wheat rotation enables dual cropping but alters root system architecture, typically suppressing taproot growth and promoting shallow lateral and fibrous roots, with unclear implications for irrigation response and water use efficiency (WUE). Field experiments were conducted in 2021 and 2022 to investigate root growth, spatial distribution, and water uptake sources, using a minirhizotron system and stable hydrogen and oxygen isotopes. The study examined the effects of two cultivation modes (direct seeding and transplanting) and three irrigation methods (border irrigation, micro-spray tape irrigation, and surface drip irrigation) on cotton root traits and WUE. Results showed that transplanted cotton roots were predominantly concentrated in the 0–30 cm soil layer (75.35–77.13% of total root length), significantly higher than those of direct-seeded cotton (63.10–74.71%). Under micro-spray tape and drip irrigation, the root length density (RLD) of transplanted cotton was 18.55% and 23.46% higher, respectively, than that of direct-seeded cotton, whereas under border irrigation it was 5.09% lower. Transplanted cotton mainly extracted water from the 0–40 cm soil layer (utilization rate: 65.49%), while direct-seeded cotton primarily relied on water from the 20–60 cm layer (53.20%). Although no statistically significant difference in yield was observed between the two cultivation modes, transplanted cotton exhibited a 15.37% higher WUE than direct-seeded cotton. Moreover, surface drip irrigation substantially enhanced WUE, exceeding that under border irrigation and micro-spray tape irrigation by 37.35% and 14.07%, respectively. This study enhances understanding of root traits in transplanted cotton and demonstrates that irrigation methods regulate WUE by modifying root distribution and water uptake patterns. Full article

The multidrug and toxic compound extrusion (MATE) protein plays a crucial role in mediating plant responses to aluminum (Al) toxicity. The key candidate gene BnaMATE43b related to Al toxicity stress in rapeseed was identified using GWAS and transcriptome analysis. In this study, the BnaMATE43b gene was cloned and functionally characterized in rapeseed. Compared with wild-type rapeseed (WT), the BnaMATE43b overexpression lines (OE) demonstrated stronger aluminum tolerance, specifically manifested in higher relative elongation of taproots (RETs) and relative total root length (RTRL); under Al toxicity stress, the enzyme activities (SOD and POD) and root activity were significantly increased in the OE lines, whereas the MDA content and relative electrical conductivity were reduced in rapeseed root. Further transcriptome analysis of OE-3 showed that the differentially expressed genes (DEGs) were mainly enriched in zeatin biosynthesis (map00908), glucosinolate biosynthesis (map00966), phenylpropanoid biosynthesis (map00940), and ascorbate and aldarate metabolism (map00053). In addition, the yeast cDNA library of rapeseed was constructed, and twenty-two candidate upstream transcription factors (UTFs) of BnaMATE43b were screened; furthermore, four candidate UTFs were obtained through one-on-one interaction validation and luciferase assays, comprising three bHLH transcription factors (BnaA02g28220D, BnaA06g07840D, and BnaA08g24520D) and one ERF transcription factor (BnaA05g23130D). Collectively, these results suggest that BnaMATE43b could improve Al tolerance in rapeseed by mediating antioxidant enzyme activities and the related metabolic pathway, while the obtained UTFs lay the foundation for further analysis of the gene regulatory network under Al toxicity stress. Full article

Carrot (Daucus carota L.) is an important root vegetable crop in the Apiaceae and is widely cultivated around the world. Expansins play crucial roles in the growth and development of plants. Here, a total of 35 carrot expansins were identified from carrot. Sequence alignment and phylogenetic analysis revealed that carrot expansins could be classified into four subfamilies, each with similar exon/intron structures and motif compositions, indicating that carrot expansins were relatively conserved during evolution. Chromosomal localization and gene duplication analysis indicated that DcEXP genes were unevenly distributed across carrot nine chromosomes and had evolved predominantly under purifying selection. Measurements of key agronomic characters of carrots at different developmental stages (30, 60, and 90 days after sowing) indicated significant positive correlations among root fresh weight, aboveground fresh weight, root–shoot ratio, root length, and root diameter. The period from 30 to 60 days after sowing was identified as the primary phase of taproot enlargement. Analysis of spatiotemporal expression patterns revealed that most DcEXP genes were specifically expressed in the taproots, and only one gene, DcEXP18, was specifically expressed in leaves. During the rapid growth period of carrot taproots (30 and 60 days after sowing), the genes DcEXP2, DcEXP3, DcEXP5, DcEXP8, DcEXP11, DcEXP13, DcEXP17, DcEXP19, DcEXP20, DcEXP22, DcEXP26, DcEXP28, and DcEXP33 exhibited high expression levels, suggesting that they played potential important roles in carrot taproot enlargement. These findings will advance our knowledge of the molecular mechanisms underlying expansin regulation of carrot growth and development. Full article

The water-level fluctuation zone (WLFZ) of the Three Gorges Reservoir (TGR) experiences seasonal submergence and exposure, resulting in soil structure degradation and intensified erosion. This study investigated how flooding duration affects root development and the erosion resistance of root–soil complexes in the WLFZ of the TGR. Two representative herbaceous species were chosen for this study: Xanthium sibiricum, an annual with a taproot system, and Cynodon dactylon, a perennial with a fibrous root system. Root traits, soil erodibility K-value, shear strength, and soil texture were measured from plant and soil samples collected at different flooding durations (145–175 m elevations). Our results showed that prolonged flooding significantly suppressed root growth, particularly in the 145–155 m zone, where root length density and root tips were markedly reduced (p < 0.05). Soil erodibility increased with flooding duration, with erodibility K-values ranging from 0.050 ± 0.002 to 0.062 ± 0.001 t·hm²·h/(MJ·mm·hm²), while shear strength declined correspondingly. Textural shifts from silty loam to silt were observed at zones experiencing extended flooding, contributing to aggregate instability and decreased internal friction angles. Notably, Cynodon dactylon demonstrated superior soil reinforcement capacity compared to Xanthium sibiricum, with its root volume and surface area significantly correlated with reduced K-values (p < 0.01) and enhanced shear strength (p < 0.001), enabling it to better prevent bank erosion under flooding conditions. These findings underscore the importance of root morphological traits in maintaining soil stability under hydrological stress and highlight the potential of perennial fibrous-rooted species for vegetation-based erosion control in fine-textured riparian zones. This study provides a theoretical basis and practical reference for ecological restoration in the WLFZ of the TGR and similar environments. Full article

Information on the effects of differences in root and soil properties on Saturated hydraulic conductivity (K_s) is crucial for estimating rainfall infiltration and evaluating sustainable ecological development. This study selected typical grass shrub composite plots widely distributed in hilly and gully areas of the Loess Plateau: Caragana korshinskii, Caragana korshinskii and Agropyron cristatum (fibrous root), and Caragana korshinskii and Artemisia gmelinii (taproot). Samples were collected at different distances from the base of the shrub (0 cm, 50 cm), with a sampling depth of 0–30 cm. The constant head method is used to measure the K_s. The K_s decreased with increasing soil depth. Due to the influence of shrub growth, there was significant spatial heterogeneity in the distribution of K_s at different positions from the base of the shrub. Compared to the sample location situated 50 cm from the base of the shrub, it was observed that in a single shrub plot, the K_s at the base were higher, while in a grass shrub composite plot, the K_s at the base were lower. Root length density, >0.25 mm aggregates, and organic matter were the main driving factors affecting K_s. The empirical equation established by using principal component analysis to reduce the dimensions of these three factors and calculate the comprehensive score was more accurate than the empirical equation established by previous researchers, who considered only root or soil properties. Root length density and organic matter had significant indirect effects on K_s, reaching 52.87% and 78.19% of the direct effects, respectively. Overall, the composite plot of taproot herbaceous and shrub (Caragana korshinskii and Artemisia gmelinii) had the highest K_s, which was 82.98 cm·d⁻¹. The ability of taproot herbaceous plants to improve K_s was higher than that of fibrous root herbaceous plants. The research results have certain significance in revealing the influence mechanism of the grass shrub composite on K_s. Full article

High nitrogen use efficiency is crucial for enhancing spinach’s tolerance to low nitrogen stress and minimizing nitrate accumulation. Here, we report that SoNRT3, a NAR2 family protein, modulates nitrate uptake and plant growth under low-nitrate conditions. SoNRT3 expression was induced by low nitrate availability in roots and prolonged nitrogen deficiency in shoots. Compared to wild-type Arabidopsis thaliana, lines overexpressing SoNRT3 exhibited higher root fresh weight, activities of nitrogen reduction/assimilation-related enzymes, tap root length, and total root diameter under low-nitrate (0.25 mM) conditions. SoNRT3 silencing reduced taproot length, lateral root number, shoot/root biomass, and ¹⁵${\mathrm{N}\mathrm{O}}_3^{-}$ uptake in spinach grown under low-nitrate conditions. SoNRT3 partially compensated for ¹⁵${\mathrm{N}\mathrm{O}}_3^{-}$ uptake in atnrt2.1 and atnrt3.1 mutants. Transcriptome analysis showed that SoNRT3 may enhance nitrate uptake and root development by promoting the expression of high-affinity nitrate transporters, nitrogen assimilation, auxin signaling, and cell differentiation. Additionally, SoNRT3 can interact with a spinach NRT2 family protein (SoNRT2a), whose transcription level was also induced by low N and N deficiency. Together, this study clarifies the key roles and regulatory network of SoNRT3 in low-nitrate tolerance, which contributes to a novel understanding of nitrate utilization in spinach. Full article

The cell wall, acting as the first line of defense against aluminum (Al) toxicity, is the primary cellular structure that encounters and perceives Al³⁺. Xyloglucan endotransglucosylase/hydrolase (XTH) plays a pivotal role in mediating cell wall remodeling, a critical mechanism for Al toxicity tolerance. In our previous studies, the candidate gene BnaXTH22 was identified through GWAS and RNA-seq analyses. Under Al toxicity stress, overexpression lines (OEs) exhibited a significant increase in the relative elongation of taproots (9.44–13.32%) and total root length (8.15–12.89%) compared to the wild type (WT). Following Al treatment, OEs displayed reduced MDA content and lower relative electrical conductivity, alongside a significantly higher root activity than WT. Transcriptomic analysis revealed that differentially expressed genes in OE under Al toxicity were predominantly enriched in stress-related biological processes, including phenylpropanoid metabolism, fatty acid biosynthesis, and lignin biosynthesis. These results suggest that BnaXTH22 overexpression could enhance Al toxicity tolerance in rapeseed, potentially by modulating cell wall synthesis to bolster plant resistance. Full article

As an endogenous hormone, auxin plays a crucial role in regulating plants’ growth and development, and also in the responses to abiotic stresses. However, the effects and mechanism of auxin and its inhibitors on plant growth and mineral nutrient absorption in citrus have not been thoroughly studied. Therefore, we used trifoliate orange (citrus’s rootstock, Poncirus trifoliata) as the experimental material to supplement the research content in this area. The trifoliate orange seedlings were treated with exogenous auxin (indolebutyric acid, IBA) and auxin inhibitor (2-naphthoxyacetic acid, 2-NOA) in a sand culture system. The results showed that compared to the control, exogenous auxin (1.0 µmol L⁻¹ IBA) significantly enhanced the taproot length, lateral root length, and lateral root number by 17.56%, 123.07%, and 88.89%, respectively, while also markedly elevating the levels of nitrogen (N), phosphorus (P), potassium (K), copper (Cu), and zinc (Zn) by 14.29%, 45.61%, 23.28%, 42.86%, and 59.80%, respectively. Again compared to the control, the auxin inhibitor (50.0 µmol L⁻¹ 2-NOA) dramatically reduced the taproot length, lateral root length, and lateral root number by 21.37%, 10.25%, and 43.33%, respectively, while also markedly decreasing the levels of N, magnesium (Mg), iron (Fe), Cu, and Zn by 7.94%, 10.42%, 24.65%, 39.25%, and 18.76%, respectively. Furthermore, IBA increased auxin accumulation in the root hair, stele, and epidermal tissues of citrus taproots, and promoted the up-regulation of auxin synthesis genes (TAR2, YUC3, YUC4, YUC6, YUC8) and transport genes (ABCB1, ABCB19, AUX1, LAX1, LAX2, PIN1, PIN3, PIN4). In contrast, 2-NOA decreased auxin levels in the root hair, stele, and epidermal tissues of citrus taproots, and was involved in the down-regulation of auxin synthesis genes (TAR2, YUC3, YUC4, YUC6) and transport genes (ABCB1, AUX1, LAX1, LAX2, LAX3, PIN3). Interestingly, 2-NOA dramatically elevated auxin level specifically in the root tip of citrus taproot. Therefore, 2-NOA disrupts auxin reflux from the root tip to root hair and epidermal tissues in citrus taproot through down-regulation of auxin transport genes, thereby creating localized (i.e., root hair zone and epidermal tissues) auxin deficiencies that compromise root system architecture and nutrient acquisition capacity. According to the results of this study, exogenous auxin analogs could regulate citrus growth and mineral nutrient absorption through the auxin synthesis and transport pathways. Full article

Soil aggregation, an important indicator of soil restoration in degraded ecosystems, is a fundamental unit of soil structure. However, research on the influence of grass–shrub composites on the distribution of >0.25 mm soil water-stable aggregates (macroaggregates) is scarce. Therefore, this study focuses on the hill and gully region of the Loess Plateau, where vegetation has been well restored since the return of farmland to forests and grasslands. The study investigated the root and macroaggregate distribution characteristics and interrelationships of three widely distributed mixed vegetation types of Caragana korshinskii and Agropyron cristatum (C-AC), C. korshinskii and Bothriochloa ischaemum (C-BI), and C. korshinskii and Artemisia gmelinii (C-AG) in this area. The results indicate that soil macroaggregates decrease with increasing depth. Due to the spatial differences in the distribution of shrub root, the content of macroaggregates at 50 cm from the shrub base was higher than that at the shrub base, with an increase of 25.98%–34.27% in different vegetation associations. In this study, the root length density and root diameter better reflected the influence of roots on the distribution of macroaggregates, and the product of the two had a good power function relationship with the content of macroaggregates (R² ≥ 0.82, p < 0.01). Grey correlation analysis showed that the influence of root length density on the distribution of large aggregates was greater than that of root diameter. The content of macroaggregates in the vegetation association of taproot herbaceous plants and shrubs was higher than that of fibrous root herbaceous plants. The average soil macroaggregate content in the C-AG was 15.79%–248.6% higher than that in the C-BI and C-AC. In this study, the spatial distribution differences in root caused by shrub growth were the main reason for the spatial heterogeneity of soil macroaggregate content distribution. The improvement ability of soil macroaggregates was higher in the combination of taproot herbaceous plants and shrubs than in the combination of fibrous root herbaceous plants and shrubs. The results of this study can, to some extent, reveal the influence and mechanisms of plant roots on soil aggregates in grass–shrub vegetation association. Full article

Medicago sativa is a high-quality legume forage that is widely cultivated around the world. However, low phosphorus (LP) stress is one of the main limiting factors for its yield and quality. Currently, it is unclear how various alfalfa root types respond to LP stress. Thus, the creeping-rooted M. varia ‘Gannong No. 4’ (or GN), tap-rooted M. sativa ‘Longdong’ (or LD), and rhizomatous-rooted M. sativa ‘Qingshui’ (or QS) were selected to detect changes in growth, metabolites, phytohormones, and organic acids after 34 days of LP stress treatment (0.01 mmol·L⁻¹ KH₂PO₄). We observed LP stress significantly inhibited plant growth, and 123, 73, and 42 considerably upregulated differential metabolites were categorized into 33, 26, and 20 metabolic pathways in GN, LD, and QS under LP stress, respectively. Amino acids, plant growth regulators, and organic acids are the main metabolites. After 34 d of LP treatment, the plant height, total surface area, leaf length, ground biomass, leaf width, total volume, leaf area, and ZT content of different root types of alfalfa significantly decreased, while the contents of malic acid, citric acid, oxalic acid, IAA, ABA, and GA₃ significantly increased. The plant height, leaf length, leaf width, leaf area, total surface area, total volume, ground biomass, root biomass, the number of different metabolites, and the contents of malic, citric, and oxalic acid, and IAA of GN were significantly higher than those of QS and LD under LP stress. From this point of view, GN was more tolerant than LD and QS under the LP condition. Full article

The Loess Plateau region of China suffers from severe soil erosion, and the selection of effective slope-protection vegetation is essential to prevent soil and water loss. This study focused on individual plants of common species in the Loess Plateau, such as Caragana korshinski Kom., Hippophae rhamnoides Linn., Pinus tabuliformis Carr., Robinia Pseudoacacia Linn., Populus tomentosa Carr., Prunus armeniaca Lam. The root spatial distribution, geometric morphology, and fractal characteristics of these plants were measured using the whole-root-excavation method, and the vertical pull-out force of their root systems was quantified using the in situ whole-plant root-pulling method. The results showed that H. rhamnoides dominates in the vertical spatial distribution of its root system through a larger number of inclined roots. C. korshinskii, P. tomentosa, R. pseudoacacia, and P. armeniaca dominate in the horizontal spatial distribution of their root systems through a greater number of horizontal roots. P. tabuliformis, on the other hand, achieves a relatively balanced distribution in both horizontal and vertical spaces through its well-developed taproot and numerous lateral roots. In terms of the geometric morphology and fractal characteristics of their root systems, H. rhamnoides and C. korshinskii exhibit a larger number of fine roots and complex branching, resulting in a higher total-root length, total-root surface area, and root fractal dimension. The soil-stabilizing ability of H. rhamnoides, C. korshinskii, and R. pseudoacacia was stronger, mainly influenced by their total-root length, total-root surface area, and inclined root quantity, and these species can be prioritized as typical vegetation for soil and water conservation in the construction of Loess Plateau vegetation. From the perspective of slope stabilization and soil conservation alone, we strongly recommend planting shrub vegetation in the Chinese Loess Plateau. Full article

To investigate the sensitivity and significance of different morphological characteristics of plant root systems on vertical pullout resistance, this study considered four main influencing factors: the number of lateral roots, taproot length, the branching angle of the lateral root, and the unit weight of the soil around the root. PC plastic model roots were employed to conduct a vertical pullout orthogonal experiment. A comprehensive ${\mu }_X$ theoretical analysis method based on the whole root system pullout test was applied for a stress analysis on root segments. Based on the results, the factors affected the vertical pullout resistance of plant root systems in the order of number of lateral roots > taproot length > unit weight of soil around the root > branching angle of the lateral root. When the number of lateral roots increased from 2 to 3, the vertical pullout resistance increased by 64%. Also, when the taproot length increased from 50 to 60 cm, the vertical pullout resistance increased by up to 46%. Furthermore, the unit weight of soil around the roots had a positive linear correlation with vertical pullout resistance. Based on the results, the number of lateral roots and the taproot length were the primary factors affecting the magnitude of the root system’s vertical pullout resistance. When selecting plants for slope protection, plant types with a larger number of lateral roots and longer taproots should be considered as the two most significant factors for achieving a better slope protection methodology. Full article

The RNA-binding glycine-rich proteins (RBGs) of the glycine-rich protein family play vital roles in regulating gene expression both at the transcriptional and post-transcriptional levels. However, the members and functions in response to abiotic stresses of the RBG gene family remain unclear in Brassica oleracea. In this study, a total of 19 BoiRBG genes were identified through genome-wide analysis in broccoli. The characteristics of BoiRBG sequences and their evolution were examined. An analysis of synteny indicated that the expansion of the BoiRBG gene family was primarily driven by whole-genome duplication and tandem duplication events. The BoiRBG expression patterns revealed that these genes are involved in reaction to diverse abiotic stress conditions (i.e., simulated drought, salinity, heat, cold, and abscisic acid) and different organs. In the present research, the up-regulation of BoiRBGA13 expression was observed when subjected to both NaCl-induced and cold stress conditions in broccoli. Moreover, the overexpression of BoiRBGA13 resulted in a noteworthy reduction in taproot lengths under NaCl stress, as well as the inhibition of seed germination under cold stress in broccoli, indicating that RBGs play different roles under various stresses. This study provides insights into the evolution and functions of BoiRBG genes in Brassica oleracea and other Brassicaceae family plants. Full article

Soil drought and rehydration have an immense impact on plant physiology and productivity, whereas the response of plant–microbe interactions to varied water availability remains largely elusive. In this study, two tea (Camellia sinensis L.) cultivars, Longjing43 and Yingshuang, were subjected to drought followed by rehydration. Soil drought significantly induced the elongation of taproots in the Yingshuang cultivar after two weeks of drought. Moreover, the four-week drought significantly reduced the root dry mass and root nitrogen, phosphorus, and potassium concentrations in both tea cultivars. Two-week rehydration recovered the root potassium concentration in the two tea cultivars, revealing the rapid response of root potassium levels to water conditions. Drought and rehydration also resulted in shifts in rhizosphere microbial diversity. A four-week drought reduced microbial alpha diversity in Longjing43 but not in the Yingshuang cultivar, and rehydration was effective in restoring alpha diversity in Longjing43. The rhizosphere microbial community tended to recover to the initial stages after rehydration in Longjing43 but not in the other cultivar. In addition, 18 microbial genera were identified as the featured microbial taxa in response to varied water availability, and a rare genus Ignavibacterium was significantly increased in the Longjing43 cultivar by rehydration after a four-week drought. Furthermore, root nitrogen, phosphorus, potassium levels, and dry mass were positively correlated with the microbial alpha diversity, while the taproot length was negatively correlated, suggesting the crucial role of plant–microbe interactions in response to drought and rehydration. Moreover, the root phosphorus concentration and taproot length also had significant effects on microbial beta diversity, further confirming their effects on the community structure of the rhizosphere microbiome. Overall, this study provides insights into the effects of drought on plant–microbe interactions in the rhizosphere of tea plants. These findings are important for harnessing the roles of the tea rhizosphere microbiome under drought. Full article