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Keywords = steric configurations

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11 pages, 1373 KiB  
Article
High-Performance Multilevel and Ambipolar Nonvolatile Organic Transistor Memory Using Small-Molecule SFDBAO and PS as Charge Trapping Elements
by Lingzhi Jin, Wenjuan Xu, Yangzhou Qian, Tao Ji, Kefan Wu, Liang Huang, Feng Chen, Nanchang Huang, Shu Xing, Zhen Shao, Wen Li, Yuyu Liu and Linghai Xie
Nanomaterials 2025, 15(14), 1072; https://doi.org/10.3390/nano15141072 - 10 Jul 2025
Viewed by 296
Abstract
Organic nonvolatile transistor memories (ONVMs) using a hybrid spiro [fluorene-9,7′-dibenzo [c, h] acridine]-5′-one (SFDBAO)/polystyrene (PS) film as bulk-heterojunction-like tunneling and trapping elements were fabricated. From the characterization of the 10% SFDBAO/PS based on ONVM, a sterically hindered small-molecule SFDBAO with rigid orthogonal configuration [...] Read more.
Organic nonvolatile transistor memories (ONVMs) using a hybrid spiro [fluorene-9,7′-dibenzo [c, h] acridine]-5′-one (SFDBAO)/polystyrene (PS) film as bulk-heterojunction-like tunneling and trapping elements were fabricated. From the characterization of the 10% SFDBAO/PS based on ONVM, a sterically hindered small-molecule SFDBAO with rigid orthogonal configuration and a donor–acceptor (D-A) structure as a molecular-scale charge storage element demonstrated significantly higher charge trapping ability than other small-molecule materials such as C60 and Alq3. The ONVM based on 10% SFDBAO/PS presents ambipolar memory behaviors with a wide memory window (146 V), a fast-switching speed (20 ms), an excellent retention time (over 5 × 104 s), and stable reversibility (36 cycles without any noticeable decay). By applying different gate voltages, the above ONVM shows reliable four-level data storage characteristics. The investigation demonstrates that the strategical bulk-heterojunction-like tunneling and trapping elements composed of small-molecule materials and polymers exhibit promising potential for high-performance ambipolar ONVMs. Full article
(This article belongs to the Section Nanoelectronics, Nanosensors and Devices)
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21 pages, 2130 KiB  
Article
A Straightforward Approach Towards Phosphadecalones by Microwave-Assisted Diels–Alder Reaction
by Elżbieta Łastawiecka, Anna E. Kozioł and K. Michał Pietrusiewicz
Molecules 2025, 30(11), 2338; https://doi.org/10.3390/molecules30112338 - 27 May 2025
Viewed by 470
Abstract
A stereoselective and scalable strategy for the synthesis of phosphorus-containing bicyclic and tricyclic compounds from 1-phenylphosphin-2-en-4-one 1-oxide is presented. This activated dienophile, available in both racemic and enantiopure forms, undergoes smooth [4+2] cycloadditions with acyclic and cyclic dienes, affording products with excellent yields [...] Read more.
A stereoselective and scalable strategy for the synthesis of phosphorus-containing bicyclic and tricyclic compounds from 1-phenylphosphin-2-en-4-one 1-oxide is presented. This activated dienophile, available in both racemic and enantiopure forms, undergoes smooth [4+2] cycloadditions with acyclic and cyclic dienes, affording products with excellent yields and controlled stereochemistry. Notably, the cis/trans-fusion of the cycloadducts (phosphadecalones and phosphahexahydrochrysene) can be selectively controlled by fine-tuning the conditions of microwave-assisted cycloaddition reaction. The influence of temperature, time, and steric effects on cis/trans and endo/exo selectivity was examined in detail. The molecular structure, including the absolute configuration, of eight products has been determined by X-ray crystallography. These analyses further established the endo-selective nature of the cycloaddition, favoring the P=O face of the dienophile. Post-cycloaddition transformations of selected P-stereogenic phosphadecalone, such as isomerization, reduction and deoxygenation, demonstrate the synthetic versatility of the resulting products. Full article
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22 pages, 8549 KiB  
Article
A Dissipative Particle Dynamics Study on the Formation of the Water-In-Petroleum Emulsion: The Contribution of the Oil
by Peng Shi, Murtaja Hamid Oudah Ogail, Xinxin Feng, Shenwen Fang, Ming Duan, Wanfen Pu and Rui Liu
Appl. Sci. 2025, 15(10), 5422; https://doi.org/10.3390/app15105422 - 13 May 2025
Viewed by 481
Abstract
High internal phase emulsions (HIPEs), in which the dispersed water phase exceeds 70%, play a critical role in enhancing oil recovery through in situ permeability modification. However, their stability remains a major challenge due to frequent phase inversion and coalescence. In this study, [...] Read more.
High internal phase emulsions (HIPEs), in which the dispersed water phase exceeds 70%, play a critical role in enhancing oil recovery through in situ permeability modification. However, their stability remains a major challenge due to frequent phase inversion and coalescence. In this study, the formation and stabilization mechanisms of water-in-oil HIPEs were investigated using a multiscale modeling approach that combines dissipative particle dynamics (DPD), molecular dynamics (MD), and density functional theory (DFT). Fourteen oil types and six polyaromatic emulsifiers with varying side-chain configurations and polar functional groups were modeled. Emulsifier performance was evaluated across 42 DPD-simulated systems with 70% and 80% water content. The results showed that emulsifiers with moderate dipole moments (~6 Debye) and spatially distributed heteroatoms achieved the most stable emulsion structures, forming continuous interfacial films or micelle-bridged networks. In contrast, emulsifiers with weak polarity (<1 Debye) or excessive stacking tendencies failed to prevent phase separation. The HOMO–LUMO energy gap and cohesive energy density (CED) were found to be poor predictors of emulsification performance. Four distinct stabilization mechanisms were identified, including interfacial film co-construction with oils and steric stabilization via side-chain architecture. The findings demonstrate that dipole moment is a reliable molecular descriptor for emulsifier design. This study provides a theoretical foundation for the rational development of high-performance emulsifiers in petroleum-based HIPE systems and highlights the potential of multiscale simulations in guiding formulation strategies. Full article
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13 pages, 2800 KiB  
Article
Using BiOI/BiOCl Composite-Enhanced Cathodic Photocurrent and Amplifying Signal Variation in AgI for Developing a Highly Sensitive Photoelectrochemical Immunosensing Platform
by Mengyang Zhang, Weikang Wan, Shurui Wang, Huiyu Zeng, Yang Wu, Zhihui Dai and Wenwen Tu
Chemosensors 2025, 13(5), 164; https://doi.org/10.3390/chemosensors13050164 - 5 May 2025
Viewed by 663
Abstract
Photoelectrochemical (PEC) sensors have emerged as potential analysis techniques in recent years due to PEC’s benefits, which include straightforward operation, quick response times, and basic equipment. In this work, a new PEC sandwich immunoassay was fabricated, which was based on low-toxicity BiOI/BiOCl composites [...] Read more.
Photoelectrochemical (PEC) sensors have emerged as potential analysis techniques in recent years due to PEC’s benefits, which include straightforward operation, quick response times, and basic equipment. In this work, a new PEC sandwich immunoassay was fabricated, which was based on low-toxicity BiOI/BiOCl composites accompanied by enhanced signal detection via AgI-conjugated antibodies (Ab2-AgI). Specifically, the low-toxicity inorganic semiconductor BiOI/BiOCl composites were first utilized in PEC bioanalysis. Owing to the unique configuration of energy levels between BiOI and BiOCl, the photoelectric response was more excellent than those of BiOI or BiOCl alone. Moreover, the Ab2-AgI conjugates were utilized as signal amplification components through the specific antibody–antigen immunoreaction. In the presence of target Ag, the immobilized Ab2-AgI conjugates clearly improve the steric hindrance of the sensing electrode and effectively hinder the transfer of photo-induced holes; meanwhile, AgI NPs can competitively absorb excitation light. A new PEC immunosensing platform for detecting tumor markers at 0 V under visible light excitation was developed, and using carcinoembryonic antigen (CEA) as a model analyte demonstrated an ultra-low detection limit of 4.9 fg·mL−1. Meanwhile, it demonstrated excellent specificity and stability, potentially opening up a novel and promising platform for detecting other critical biomarkers. Full article
(This article belongs to the Special Issue Electrochemical Biosensors: Advances and Prospects)
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17 pages, 1794 KiB  
Review
Heavy Chalcogen Properties of Sulfur and Selenium Enhance Nucleic Acid-Based Therapeutics
by Stephen J. Dansereau and Jia Sheng
Biomolecules 2025, 15(2), 218; https://doi.org/10.3390/biom15020218 - 2 Feb 2025
Cited by 4 | Viewed by 1836
Abstract
The Group 16 elements of the periodic table have a characteristic valence shell configuration instrumental to their chemical properties and reactivities. The electrostatic potentials of these so-called chalcogens have been exploited in the design of materials that require the efficient passage of electrons [...] Read more.
The Group 16 elements of the periodic table have a characteristic valence shell configuration instrumental to their chemical properties and reactivities. The electrostatic potentials of these so-called chalcogens have been exploited in the design of materials that require the efficient passage of electrons including supermagnets, photocatalytic dyes, and solar panels. Likewise, the incorporation of the heavy chalcogen selenium into organic frameworks has been shown to increase the reactivities of double bonds and heterocyclic rings, while its interactions with aromatic side chains in the hydrophobic core of proteins via selenomethionine impart a stabilizing effect. Typically present in the active site, the hypervalence of selenocysteine enables it to further stabilize the folded protein and mediate electron transfer. Selenium’s native occurrence in bacterial tRNA maintains base pair fidelity, most notably during oxidative stress, through its electronic and steric effects. Such native modifications at the positions 2 and 5 of uridine render these sites relevant in the design of RNA-based therapeutics. Innocuous selenium substitution for oxygen in the former and the standard methods of selenium-derivatized oligonucleotide synthesis and detection have led to the establishment of a novel class of therapeutics. In this review, we summarize some progress in this area. Full article
(This article belongs to the Special Issue Recent Advances in RNA Editing and Modification)
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12 pages, 3977 KiB  
Article
Hole-Transporting Materials Based on a Fluorene Unit for Efficient Optoelectronic Devices
by Maoli Man, Mingming Zhao and Yunfei Lyu
Materials 2024, 17(22), 5417; https://doi.org/10.3390/ma17225417 - 6 Nov 2024
Cited by 2 | Viewed by 1024
Abstract
Solution-processable hole-transporting materials (HTMs) that form highly soluble films and thermally stable amorphous states are essential for advancing optoelectronic devices. However, the currently commercialized HTM, N,N-bis(3-methylphenyl)-N,N0-bis(phenyl)benzidine (TPD), exhibits poor solubility and limited carrier transport when spin-coated into thin films. Herein, to address these [...] Read more.
Solution-processable hole-transporting materials (HTMs) that form highly soluble films and thermally stable amorphous states are essential for advancing optoelectronic devices. However, the currently commercialized HTM, N,N-bis(3-methylphenyl)-N,N0-bis(phenyl)benzidine (TPD), exhibits poor solubility and limited carrier transport when spin-coated into thin films. Herein, to address these issues, a fluorenyl group was ingeniously incorporated into a series of molecules structurally similar to TPD. The resulting compounds, namely, 2,7-di-(N,N-diphenylamino)-9,9-dimethyl-9H-fluorene (DDF), 2,7-di-p-tolyl-(N,N-diphenylamino)-9,9-dimethyl-9H-fluorene (2M-DDF), and 2,7-di-tetra-p-tolyl-(N,N-diphenylamino)-9,9-dimethyl-9H-fluorene (4M-DDF), offered tunable energy levels, carrier transport, crystallinity, and steric configuration via adjustment of the number of terminal methyl groups. Owing to its satisfactory performance, 2M-DDF can serve as an effective alternative to TPD in OLED devices as well as a guest molecule in host–guest systems for long-afterglow materials. Devices incorporating 2M-DDF as the HTM, with an Alq3 emitter, achieved a maximum CE of 4.78 cd/A and a maximum L (Lmax) of 21,412 cd m−2, with a turn-on voltage (Von) of 3.8 V. The luminous efficiency of 2M-DDF was approximately five times that of TPD (4106 cd m−2). Furthermore, when 2M-DDF and TPD were utilized as guest molecules in afterglow materials, the afterglow duration of 2M-DDF (10 s) was 2.5 times that of TPD (4 s). This study provides a theoretical basis for the development of high-performance HTMs and long-afterglow materials, establishing a framework for the application of fluorene-based compounds in emerging fields such as long-afterglow materials. Full article
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16 pages, 14019 KiB  
Article
Atomic-Level Insights into the Adsorption of Methyl-Substituted Quinoxalinones on Fe(110): A Dispersion-Corrected DFT Analysis
by Hassane Lgaz, Ali Aldalbahi and Han-Seung Lee
Molecules 2024, 29(21), 5123; https://doi.org/10.3390/molecules29215123 - 30 Oct 2024
Cited by 1 | Viewed by 873
Abstract
Corrosion of metallic equipment is a critical issue across various industries, necessitating the development of advanced protective strategies. This study utilized dispersion-corrected density functional theory (DFT) with Becke–Johnson D3(BJ) to examine the atomic-level adsorption of quinoxalinones on Fe(110) surfaces, focusing on optimizing substitution [...] Read more.
Corrosion of metallic equipment is a critical issue across various industries, necessitating the development of advanced protective strategies. This study utilized dispersion-corrected density functional theory (DFT) with Becke–Johnson D3(BJ) to examine the atomic-level adsorption of quinoxalinones on Fe(110) surfaces, focusing on optimizing substitution strategies to enhance corrosion inhibition. Three quinoxalinones, quinoxalin-2(1H)-one (QNO), 3-methylquinoxalin-2(1H)-one (QNOM), and 3,7-dimethylquinoxalin-2(1H)-one (QNO2M), were investigated in various configurations and protonation states. Protonated quinoxalinones demonstrated a stronger surface affinity, primarily interacting through oxygen atoms and conjugated systems, with greater energetic stability compared to neutral molecules, driven by enhanced electrostatic interactions and charge transfer mechanisms. The parallel adsorption configuration was more stable than the perpendicular mode, which in some adsorption systems did not form bonds with the iron surface. Notably, the presence of methyl substitutions did not significantly enhance adsorption strength; QNO exhibited higher energetic stability due to reduced steric interference, which maintained its planarity. Projected density of states (PDOS), electron density difference (EDD), and electron localization function (ELF) analyses confirmed the importance of charge transfer between quinoxalinone active sites and the 3d orbitals of iron in stabilizing the adsorption of molecules. These findings underscore the importance of judicious quinoxalinone functionalization to preserve their efficacy as corrosion inhibitors. Full article
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25 pages, 2920 KiB  
Review
Thermostable α-Amylases and Laccases: Paving the Way for Sustainable Industrial Applications
by Nivedita Jaiswal and Pundrik Jaiswal
Processes 2024, 12(7), 1341; https://doi.org/10.3390/pr12071341 - 27 Jun 2024
Cited by 8 | Viewed by 6756
Abstract
The growing demand in industrial and biotechnological settings for more efficient enzymes with enhanced biochemical features, particularly thermostability and thermotolerance, necessitates a timely response. Renowned for their versatility, thermostable enzymes offer significant promise across a range of applications, including agricultural, medicinal, and biotechnological [...] Read more.
The growing demand in industrial and biotechnological settings for more efficient enzymes with enhanced biochemical features, particularly thermostability and thermotolerance, necessitates a timely response. Renowned for their versatility, thermostable enzymes offer significant promise across a range of applications, including agricultural, medicinal, and biotechnological domains. This comprehensive review summarizes the structural attributes, catalytic mechanisms, and connection between structural configuration and functional activity of two major classes of thermostable enzymes: α-amylases and laccases. These enzymes serve as valuable models for understanding the structural foundation behind the thermostability of proteins. By highlighting the commercial importance of thermostable enzymes and the interest these generate among researchers in further optimization and innovation, this article can greatly contribute to ongoing research on thermostable enzymes and aiding industries in optimizing production processes via immobilization, use of stabilizing additives, chemical modification, protein engineering (directed evolution and mutagenesis), and genetic engineering (through cloning and expression of thermostable genes). It also gives insights to the exploration of suitable strategies and factors for enhancing thermostability like increasing substrate affinity; introducing electrostatic, intramolecular, and intermolecular hydrophobic interactions; mitigating steric hindrance; increasing flexibility of an active site; and N- and C-terminal engineering, thus resulting in heightened multipronged stability and notable enhancements in the enzymes’ industrial applicability. Full article
(This article belongs to the Special Issue Development, Modelling and Simulation of Biocatalytic Processes)
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15 pages, 9393 KiB  
Article
Evaluation of the Thermal, Chemical, Mechanical, and Microbial Stability of New Nanohybrids Based on Carboxymethyl-Scleroglucan and Silica Nanoparticles for EOR Applications
by Rubén H. Castro, Laura M. Corredor, Sebastián Llanos, Zully P. Rodríguez, Isidro Burgos, Jhorman A. Niño, Eduardo A. Idrobo, Arnold R. Romero Bohórquez, Karol Zapata Acosta, Camilo A. Franco and Farid B. Cortés
Nanomaterials 2024, 14(8), 676; https://doi.org/10.3390/nano14080676 - 13 Apr 2024
Cited by 2 | Viewed by 2017
Abstract
Scleroglucan (SG) is resistant to harsh reservoir conditions such as high temperature, high shear stresses, and the presence of chemical substances. However, it is susceptible to biological degradation because bacteria use SG as a source of energy and carbon. All degradation effects lead [...] Read more.
Scleroglucan (SG) is resistant to harsh reservoir conditions such as high temperature, high shear stresses, and the presence of chemical substances. However, it is susceptible to biological degradation because bacteria use SG as a source of energy and carbon. All degradation effects lead to viscosity loss of the SG solutions, affecting their performance as an enhanced oil recovery (EOR) polymer. Recent studies have shown that nanoparticles (NPs) can mitigate these degradative effects. For this reason, the EOR performance of two new nanohybrids (NH-A and NH-B) based on carboxymethyl-scleroglucan and amino-functionalized silica nanoparticles was studied. The susceptibility of these products to chemical, mechanical, and thermal degradation was evaluated following standard procedures (API RP 63), and the microbial degradation was assessed under reservoir-relevant conditions (1311 ppm and 100 °C) using a bottle test system. The results showed that the chemical reactions for the nanohybrids obtained modified the SG triple helix configuration, impacting its viscosifying power. However, the nanohybrid solutions retained their viscosity during thermal, mechanical, and chemical degradation experiments due to the formation of a tridimensional network between the nanoparticles (NPs) and the SG. Also, NH-A and NH-B solutions exhibited bacterial control because of steric hindrances caused by nanoparticle modifications to SG. This prevents extracellular glucanases from recognizing the site of catalysis, limiting free glucose availability and generating cell death due to substrate depletion. This study provides insights into the performance of these nanohybrids and promotes their application in reservoirs with harsh conditions. Full article
(This article belongs to the Special Issue Advances in Nanomodified Polymers and in Polymer Science)
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14 pages, 20604 KiB  
Article
Improvement in Dibenzofuran-Based Hole Transport Materials for Flexible Perovskite Solar Cells
by Yuanqiong Lin, Xiao Zhang, Jinchuan Lu, Xiaohan Lin, Yinghua Lu, Xin Li and Song Tu
Molecules 2024, 29(6), 1208; https://doi.org/10.3390/molecules29061208 - 8 Mar 2024
Cited by 4 | Viewed by 2110
Abstract
The π-conjugated system and the steric configuration of hole transport materials (HTMs) could greatly affect their various properties and the corresponding perovskite solar cells’ efficiencies. Here, a molecular engineering strategy of incorporating different amounts of p-methoxyaniline-substituted dibenzofurans as π bridge into HTMs was [...] Read more.
The π-conjugated system and the steric configuration of hole transport materials (HTMs) could greatly affect their various properties and the corresponding perovskite solar cells’ efficiencies. Here, a molecular engineering strategy of incorporating different amounts of p-methoxyaniline-substituted dibenzofurans as π bridge into HTMs was proposed to develop oligomer HTMs, named mDBF, bDBF, and tDBF. Upon extending the π-conjugation of HTMs, their HOMO energy levels were slightly deepened, significantly increasing the thermal stability and hole mobility. The incorporation of p-methoxyaniline bridges built one or two additional triphenylamine propeller structures, resulting in a denser film. Here, the tDBF-based n-i-p flexible perovskite solar cells createdchampion efficiency, giving a power conversion efficiency of 19.46%. And the simple synthesis and purification process of tDBF contributed to its low manufacturing cost in the laboratory. This work provided a reference for the development of low-cost and efficient HTMs. Full article
(This article belongs to the Special Issue Recent Advances in Dye-Sensitized and Perovskite Solar Cells)
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16 pages, 6576 KiB  
Article
Atomic Force Microscopy and Molecular Dynamic Simulation of Adsorption of Polyacrylamide with Different Chemistries onto Calcium Carbonate
by Jin Hau Lew, Keat Yung Hue, Omar K. Matar, Erich A. Müller, Paul F. Luckham, Adrielle Sousa Santos and Maung Maung Myo Thant
Polymers 2024, 16(4), 494; https://doi.org/10.3390/polym16040494 - 10 Feb 2024
Cited by 4 | Viewed by 2113
Abstract
This study investigates the interaction of polyacrylamide (PAM) of different functional groups (sulfonate vs. carboxylate) and charge density (30% hydrolysed vs. 10% hydrolysed) with calcium carbonate (CaCO3) via atomic force microscopy (AFM) and partly via molecular dynamic (MD) simulations. The PAM [...] Read more.
This study investigates the interaction of polyacrylamide (PAM) of different functional groups (sulfonate vs. carboxylate) and charge density (30% hydrolysed vs. 10% hydrolysed) with calcium carbonate (CaCO3) via atomic force microscopy (AFM) and partly via molecular dynamic (MD) simulations. The PAM used were F3330 (30% hydrolysed), AN125 (25% sulfonated), and AN910 (% hydrolysed). A total of 100 ppm of PAMs was prepared in 0.1% NaCl, 3% NaCl, and 4.36% NaNO3 to be employed in AFM experiments, while oligomeric models (30 repeating units) of hydrolysed polyacrylamide (HPAM), sulfonated polyacrylamide (SPAM), and neutral PAM (NPAM) were studied on a model calcite surface on MD simulations. AFM analysis indicated that F3330 has a higher average adhesion and interaction energy with CaCO3 than AN125 due to the bulky sulfonate side group of AN125 interfering with SPAM adsorption. Steric repulsion of both PAMs was similar due to their comparable molecular weights and densities of the charged group. In contrast, AN910 showed lower average adhesion and interaction energy, along with slightly longer steric repulsion with calcite than F3330, suggesting AN910 adopts more loops and tails than the slightly flatter F3330 configuration. An increase in salt concentration from 0.1% to 3% NaCl saw a reduction in adhesion and interaction energy for F3330 and AN125 due to charge screening, while AN910 saw an increase, and these values increased further at 4.36% NaNO3. MD simulations revealed that the salt ions in the system formed salt bridges between PAM and calcite, indicating that the adhesion and interaction energy observed from AFM are likely to be the net balance between PAM charged group screening and salt bridging by the salt ions present. Salt ions with larger bare radii and smaller hydrated radii were shown to form stronger salt bridges. Full article
(This article belongs to the Section Polymer Analysis and Characterization)
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22 pages, 3283 KiB  
Article
Structure of Tris[2-(4-pyridyl)ethyl]phosphine, Tris[2-(2-pyridyl)ethyl]phosphine, and Their Chalcogenides in Solution: Dipole Moments, IR Spectroscopy, and DFT Study
by Anastasiia A. Kuznetsova, Denis V. Chachkov, Natalia A. Belogorlova, Svetlana F. Malysheva and Yana A. Vereshchagina
Molecules 2024, 29(1), 110; https://doi.org/10.3390/molecules29010110 - 23 Dec 2023
Cited by 1 | Viewed by 1801
Abstract
Tris(hetaryl)substituted phosphines and their chalcogenides are promising polydentate ligands for the design of metal complexes. An experimental and theoretical conformational analysis of tris[2-(4-pyridyl)ethyl]phosphine, tris[2-(2-pyridyl)ethyl]phosphine, and their chalcogenides was carried out by the methods of dipole moments, IR spectroscopy and DFT B3PW91/6-311++G(df,p) calculations. In [...] Read more.
Tris(hetaryl)substituted phosphines and their chalcogenides are promising polydentate ligands for the design of metal complexes. An experimental and theoretical conformational analysis of tris[2-(4-pyridyl)ethyl]phosphine, tris[2-(2-pyridyl)ethyl]phosphine, and their chalcogenides was carried out by the methods of dipole moments, IR spectroscopy and DFT B3PW91/6-311++G(df,p) calculations. In solution, these compounds exist as an equilibrium of mainly non-eclipsed (synclinal or antiperiplanar) forms with a predominance of a symmetrical conformer having a gauche-orientation of the Csp3–Csp3 bonds of pyridylethyl substituents relative to the P=X bond (X = lone pair, O, S, Se) and a gauche-orientation of the pyridyl rings relative to the zigzag ethylene bridges. Regardless of the presence and nature of the chalcogen atom (oxygen, sulfur, or selenium) in the studied molecules with many axes of internal rotation, steric factors—the different position of the nitrogen atoms in the pyridyl rings and the configuration of ethylene bridges—determine the realization and spatial structure of preferred conformers. Full article
(This article belongs to the Special Issue Recent Development of Organophosphorus Chemistry)
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20 pages, 5610 KiB  
Article
Atomic Force Microscopy of Hydrolysed Polyacrylamide Adsorption onto Calcium Carbonate
by Jin Hau Lew, Omar K. Matar, Erich A. Müller, Paul F. Luckham, Adrielle Sousa Santos and Maung Maung Myo Thant
Polymers 2023, 15(20), 4037; https://doi.org/10.3390/polym15204037 - 10 Oct 2023
Cited by 2 | Viewed by 2020
Abstract
In this work, the interaction of hydrolysed polyacrylamide (HPAM) of two molecular weights (F3330, 11–13 MDa; F3530, 15–17 MDa) with calcium carbonate (CaCO3) was studied via atomic force microscopy (AFM). In the absence of polymers at 1.7 mM and 1 M [...] Read more.
In this work, the interaction of hydrolysed polyacrylamide (HPAM) of two molecular weights (F3330, 11–13 MDa; F3530, 15–17 MDa) with calcium carbonate (CaCO3) was studied via atomic force microscopy (AFM). In the absence of polymers at 1.7 mM and 1 M NaCl, good agreement with DLVO theory was observed. At 1.7 mM NaCl, repulsive interaction during approach at approximately 20 nm and attractive adhesion of approximately 400 pN during retraction was measured, whilst, at 1 M NaCl, no repulsion during approach was found. Still, a significantly larger adhesion of approximately 1400 pN during retraction was observed. In the presence of polymers, results indicated that F3330 displayed higher average adhesion (450–625 pN) and interaction energy (43–145 aJ) with CaCO3 than F3530’s average adhesion (85–88 pN) and interaction energy (8.4–11 aJ). On the other hand, F3530 exerted a longer steric repulsion distance (70–100 nm) than F3330 (30–70 nm). This was likely due to the lower molecular weight. F3330 adopted a flatter configuration on the calcite surface, creating more anchor points with the surface in the form of train segments. The adhesion and interaction energy of both HPAM with CaCO3 can be decreased by increasing the salt concentration. At 3% NaCl, the average adhesion and interaction energy of F3330 was 72–120 pN and 5.6–17 aJ, respectively, while the average adhesion and interaction energy of F3530 was 11.4–48 pN and 0.3–2.98 aJ, respectively. The reduction of adhesion and interaction energy was likely due to the screening of the COO charged group of HPAM by salt cations, leading to a reduction of electrostatic attraction between the negatively charged HPAM and the positively charged CaCO3. Full article
(This article belongs to the Special Issue Surfaces and Interfaces of Polymer Composites)
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17 pages, 3499 KiB  
Article
New Insights into Acylhydrazones E/Z Isomerization: An Experimental and Theoretical Approach
by Sara Fernández-Palacios, Esther Matamoros, Isabel Morato Rojas, Juan T. López Navarrete, M. Carmen Ruiz Delgado, Yolanda Vida and Ezequiel Perez-Inestrosa
Int. J. Mol. Sci. 2023, 24(19), 14739; https://doi.org/10.3390/ijms241914739 - 29 Sep 2023
Cited by 6 | Viewed by 2935
Abstract
A family of acylhydrazones have been prepared and characterized with the aim of investigating their potential as information storage systems. Their well-established synthetic methodologies allowed for the preparation of seven chemically stable acylhydrazones in excellent yields that have been photophysically and photochemically characterized. [...] Read more.
A family of acylhydrazones have been prepared and characterized with the aim of investigating their potential as information storage systems. Their well-established synthetic methodologies allowed for the preparation of seven chemically stable acylhydrazones in excellent yields that have been photophysically and photochemically characterized. In addition, DFT and TD-DFT calculations have been performed to gain more insights into the structural, energetic and photophysical properties of the E/Z isomers. Our results reveal that E/Z configurational isomerization upon irradiation is highly dependent on the stabilization of the E or Z isomers due to the formation of intramolecular H bonds and the electronic/steric effects intrinsically related to their structures. In addition, Raman spectroscopy is also used to confirm the molecular structural changes after the formation of hydrogen bonds in the isomers. Full article
(This article belongs to the Special Issue Noncovalent Interactions: New Developments in Experiment and Theory)
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14 pages, 8955 KiB  
Article
Molecular Dynamics Simulations of Deformable Viral Capsomers
by Lauren B. Nilsson, Fanbo Sun, J. C. S. Kadupitiya and Vikram Jadhao
Viruses 2023, 15(8), 1672; https://doi.org/10.3390/v15081672 - 31 Jul 2023
Cited by 1 | Viewed by 2251
Abstract
Most coarse-grained models of individual capsomers associated with viruses employ rigid building blocks that do not exhibit shape adaptation during self-assembly. We develop a coarse-grained general model of viral capsomers that incorporates their stretching and bending energies while retaining many features of the [...] Read more.
Most coarse-grained models of individual capsomers associated with viruses employ rigid building blocks that do not exhibit shape adaptation during self-assembly. We develop a coarse-grained general model of viral capsomers that incorporates their stretching and bending energies while retaining many features of the rigid-body models, including an overall trapezoidal shape with attractive interaction sites embedded in the lateral walls to favor icosahedral capsid assembly. Molecular dynamics simulations of deformable capsomers reproduce the rich self-assembly behavior associated with a general T=1 icosahedral virus system in the absence of a genome. Transitions from non-assembled configurations to icosahedral capsids to kinetically-trapped malformed structures are observed as the steric attraction between capsomers is increased. An assembly diagram in the space of capsomer–capsomer steric attraction and capsomer deformability reveals that assembling capsomers of higher deformability into capsids requires increasingly large steric attraction between capsomers. Increasing capsomer deformability can reverse incorrect capsomer–capsomer binding, facilitating transitions from malformed structures to symmetric capsids; however, making capsomers too soft inhibits assembly and yields fluid-like structures. Full article
(This article belongs to the Special Issue Physical Virology - Viruses at Multiple Levels of Complexity)
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