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Keywords = salt replication process

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18 pages, 2667 KiB  
Communication
Parylene-C Modified OSTE Molds for PDMS Microfluidic Chip Fabrication and Applications in Plasma Separation and Polymorphic Crystallization
by Muyang Zhang, Haonan Li, Xionghui Li, Zitong Ye, Qinghao He, Jie Zhou, Jiahua Zhong, Hao Chen, Xinyi Chen, Yixi Shi, Huiru Zhang, Lok Ting Chu and Weijin Guo
Biosensors 2025, 15(6), 388; https://doi.org/10.3390/bios15060388 - 16 Jun 2025
Viewed by 582
Abstract
This work presents a novel microfabrication process that addresses the interference of thiol groups on off-stoichiometry thiolene (OSTE) surfaces with the curing of polydimethylsiloxane (PDMS) by integrating the high-performance polymer Parylene-C. The process utilizes a Parylene-C coating to encapsulate the active thiol groups [...] Read more.
This work presents a novel microfabrication process that addresses the interference of thiol groups on off-stoichiometry thiolene (OSTE) surfaces with the curing of polydimethylsiloxane (PDMS) by integrating the high-performance polymer Parylene-C. The process utilizes a Parylene-C coating to encapsulate the active thiol groups on the OSTE surface, enabling precise replication of PDMS microstructures. Based on this method, PDMS micropillar arrays and microwell arrays were successfully fabricated and applied in passive plasma separation and polymorphic crystal formation, respectively. The experimental results demonstrate that the plasma-separation chip efficiently isolates plasma from whole-blood samples with varying hematocrit (HCT) levels, achieving a separation efficiency of up to 57.5%. Additionally, the microwell array chip exhibits excellent stability and controllability in the growth of salt and protein crystals. This study not only provides a new approach for microfabricating microfluidic chips, but also highlights its potential applications in biomedical diagnostics and materials science. Full article
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25 pages, 4243 KiB  
Article
Effects of Different Water Contents on the Quality Characteristics of Roasted Large Yellow Croaker (Larimichthys crocea) Fillets
by Shuting Huang, Shuji Liu, Ping Wen, Xiangyang Lin, Xiaoting Chen, Yongchang Su, Yuping Xie, Huawei Zheng, Yihui Chen and Zhiyu Liu
Foods 2025, 14(9), 1638; https://doi.org/10.3390/foods14091638 - 7 May 2025
Cited by 1 | Viewed by 555
Abstract
This study investigated the effect of the water content of large yellow croaker fillets on their quality characteristics after roasting. The large yellow croaker fillets were randomly divided into groups, namely, the fresh group (BMC-77), the 3% salt-cured group (BMC-70), and groups cured [...] Read more.
This study investigated the effect of the water content of large yellow croaker fillets on their quality characteristics after roasting. The large yellow croaker fillets were randomly divided into groups, namely, the fresh group (BMC-77), the 3% salt-cured group (BMC-70), and groups cured with 3% salt followed by hot air drying to obtain different moisture contents (BMC-65, BMC-60, and BMC-55). Then, the fillets were roasted at 220 °C for 20 min. There were four replicates for each group. Various indicators, including color, texture, thiobarbituric acid-reactive substance (TBARS) content, total volatile basic nitrogen (TVB-N) content, water distribution, volatile components, and myofibrillar proteins were determined, and a sensory evaluation was carried out. The results showed that as the water content decreased, the lightness (L*) of the roasted fillets significantly decreased (p < 0.05), while the redness (a*) and yellowness (b*) increased. The hardness, shear force, TBARS, and TVB-N values all increased significantly (p < 0.05). The proportion of immobile water decreased, while the proportions of tightly bound water, free water, and loosely bound water increased. The electronic nose, electronic tongue, and GC-MS analyses revealed that there were significant differences in odor, taste, and volatile components among fillets with different water contents. A comprehensive analysis of all the indicators demonstrated that the fillets with an initial water content of 65% (BMC-65) achieved the best sensory qualities after roasting in terms of taste and flavor. An appropriate reduction in the initial water content helped to improve the texture and appearance of the fillets while delaying the degradation of proteins and lipids. This study provides a theoretical foundation for optimizing the roasting process of large yellow croaker fillets. Future research could explore the synergistic effects of the roasting conditions and water content to achieve more accurate quality control. Full article
(This article belongs to the Special Issue Innovative Technology of Aquatic Product Processing)
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17 pages, 3389 KiB  
Article
Genome-Wide Identification and Functional Analysis of C2H2 Zinc Finger Transcription Factor Genes in the Intertidal Macroalga Pyropia haitanensis
by Jiajia Xie, Dehua Ji, Yan Xu, Kai Xu, Chaotian Xie and Wenlei Wang
Int. J. Mol. Sci. 2025, 26(9), 4042; https://doi.org/10.3390/ijms26094042 - 24 Apr 2025
Viewed by 584
Abstract
The possible regulatory effects of C2H2 zinc finger proteins, which are important transcription factors, on intertidal seaweed responses to abiotic stress are unclear. This study was conducted to comprehensively analyze the C2H2 gene family of a representative intertidal seaweed species (Pyropia haitanensis [...] Read more.
The possible regulatory effects of C2H2 zinc finger proteins, which are important transcription factors, on intertidal seaweed responses to abiotic stress are unclear. This study was conducted to comprehensively analyze the C2H2 gene family of a representative intertidal seaweed species (Pyropia haitanensis) and clarify its genomic characteristics and biological functions. A total of 107 PhC2H2 zinc finger protein-encoding genes distributed on five P. haitanensis chromosomes were identified and divided into three subgroups. The expression levels of 85, 61, 58, 45, and 41 PhC2H2 genes responded in the maturation of filaments, high-temperature, salt, low-irradiance, and dehydration stress, respectively. The PhC2H2 gene family was conserved during Porphyra evolution, with no indications of large-scale genome-wide replication events. On average, PhC2H2 genes had more transposable element (TE) insertions than Pyropia yezoensis and Porphyra umbilicalisC2H2 genes, suggesting that TE insertions may have been the main driver of PhC2H2 gene family expansion. A key gene (PhC2H2.94) screened following a quantitative trait locus analysis was significantly responsive to high-temperature stress and was associated with photosynthesis, peroxisomes, the ubiquitin proteasome pathway, and the endoplasmic reticulum-related protein processing pathway, which contribute to the stress tolerance of P. haitanensis. Additionally, PhC2H2.94 transgenic Chlamydomonas reinhardtii exhibited increased tolerance to heat stress. This study provides new insights and genetic resources for characterizing the molecular mechanism underlying intertidal seaweed responses to abiotic stresses and breeding stress-resistant macroalgae. Full article
(This article belongs to the Section Molecular Genetics and Genomics)
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17 pages, 4170 KiB  
Article
The Effects of Inoculation with Rhizosphere Phosphate-Solubilizing Bacteria on the Growth and Physiology of Reaumuria soongorica Seedlings Under NaCl Stress
by Xueying Wang, Peifang Chong, Xinguang Bao and Feng Zhang
Forests 2025, 16(4), 591; https://doi.org/10.3390/f16040591 - 28 Mar 2025
Viewed by 358
Abstract
Soil salinization significantly exacerbates the deficiency in plant-available phosphorus in the soil, thereby adversely affecting plant growth and development. Through various processes, phosphate-solubilizing bacteria in the rhizosphere significantly increase soil-soluble phosphorus content, boosting plant development and stress resistance. This study focused on annual [...] Read more.
Soil salinization significantly exacerbates the deficiency in plant-available phosphorus in the soil, thereby adversely affecting plant growth and development. Through various processes, phosphate-solubilizing bacteria in the rhizosphere significantly increase soil-soluble phosphorus content, boosting plant development and stress resistance. This study focused on annual R. soongorica seedlings to examine how rhizosphere phosphate-solubilizing bacteria enhance growth under NaCl-induced stress conditions. This study isolated and characterized rhizosphere phosphate-solubilizing bacteria, evaluating their phosphate solubilization capacity and effects on R. soongorica seedling growth and physiology under NaCl stress through pot experiments, with potential applications in saline soil improvement and desert ecosystem restoration. This study used four treatment groups (control group, NaCl treatment group, bacterial inoculation treatment group, and bacterial and NaCl mixed-treatment group) with twelve treatments and four replicates per treatment. The experimental results demonstrated that five phosphate-solubilizing bacterial strains exhibited a significant phosphate solubilization capacity, accompanied by a notable reduction in pH within the inorganic phosphorus medium. Compared to the NaCl treatment, the net growth of the plant height of R. soongorica seedlings inoculated with strains J23, J24, and M1 under NaCl stress increased significantly (p < 0.05), and all of them more than doubled, and the net growth of the stem diameter of R. soongorica seedlings inoculated with strain J24 increased significantly by 144.17%. The physiological characteristics of R. soongorica seedlings demonstrated significant alterations following inoculation with the five phosphate-solubilizing bacterial strains. The inoculation of R. soongorica seedlings with the five phosphate-solubilizing bacterial resulted in a statistically significant increase in both foliar total phosphorus content and available phosphorus levels within the rhizosphere soil (p < 0.05). Additionally, under NaCl stress conditions, R. soongorica seedlings inoculated with the five phosphate-solubilizing bacterial strains exhibited varying degrees of salt tolerance, with the following descending order of effectiveness: J24 > P2 > J23 > P3 > M1. In conclusion, the rhizosphere phosphate-solubilizing bacteria J24 represents a potentially valuable microbial resource for saline soil amelioration, demonstrating the most pronounced enhancement in both the growth parameters and salt tolerance of R. soongorica seedlings under 300 mmol·L−1 NaCl stress. Full article
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15 pages, 6420 KiB  
Article
Cellular Automaton Simulation of Corrosion in 347H Steel Exposed to Molten Solar Salt at Pilot-Plant Scale
by Juan C. Reinoso-Burrows, Marcelo Cortés-Carmona, Mauro Henríquez, Edward Fuentealba, Andrés Alvear, Carlos Soto, Carlos Durán, Raúl Pastén, Luis Guerreiro and Felipe M. Galleguillos Madrid
Materials 2025, 18(3), 713; https://doi.org/10.3390/ma18030713 - 6 Feb 2025
Viewed by 662
Abstract
The fast-paced depletion of fossil fuels and environmental concerns have intensified interest in renewable energies, with dispatchable solar energy emerging as a key alternative. Concentrated solar power (CSP) technology, utilizing thermal energy storage (TES) systems with molten salts at 560 °C, offers significant [...] Read more.
The fast-paced depletion of fossil fuels and environmental concerns have intensified interest in renewable energies, with dispatchable solar energy emerging as a key alternative. Concentrated solar power (CSP) technology, utilizing thermal energy storage (TES) systems with molten salts at 560 °C, offers significant potential for large-scale energy generation. However, these extreme conditions pose challenges related to material corrosion, which is critical for maintaining the efficiency and lifespan of CSP. This research modeled the corrosion process of 347H stainless steel in molten solar salt (60% NaNO3 + 40% KNO3) melted at 400 °C using a cellular automaton (CA) algorithm. The CA model simulated oxide growth under pilot-plant conditions in a lattice of 400 × 400 cells. SEM-EDS imaging compared the model with a mean squared error of 2%, corresponding to a corrosion layer of 4.25 µm after 168 h. The simulation applied von Neumann and Margolus neighborhoods for the ion movement and reaction rules, achieving a cell size of 0.125 µm and 10.08 s per iteration. This study demonstrates the CA model’s effectiveness in replicating corrosion processes, offering a tool to optimize material performance in CSP systems. Additionally, continuing this investigation could contribute to the development of industrial applications, enabling the design of preventive strategies for large-scale operations. Full article
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16 pages, 2408 KiB  
Article
Growth, Gas Exchange, and Phytochemical Quality of Nasturtium (Tropaeolum majus L.) Subjected to Proline Concentrations and Salinity
by Vitor Araujo Targino, Thiago Jardelino Dias, Valéria Fernandes de Oliveira Sousa, Mariana de Melo Silva, Adjair José da Silva, João Everthon da Silva Ribeiro, Ramon Freire da Silva, Diego Silva Batista, Juliane Maciel Henschel and Mailson Monteiro do Rêgo
Plants 2025, 14(3), 301; https://doi.org/10.3390/plants14030301 - 21 Jan 2025
Cited by 3 | Viewed by 1076
Abstract
Salinity is a significant challenge for agriculture in semi-arid regions, affecting the growth and productivity of plants like Tropaeolum majus (nasturtium), which is valued for its ornamental, medicinal, and food uses. Salt stress disrupts the plant’s biochemical, physiological, and anatomical processes, limiting its [...] Read more.
Salinity is a significant challenge for agriculture in semi-arid regions, affecting the growth and productivity of plants like Tropaeolum majus (nasturtium), which is valued for its ornamental, medicinal, and food uses. Salt stress disrupts the plant’s biochemical, physiological, and anatomical processes, limiting its development. This study investigates the potential of proline as an osmoprotectant to mitigate the effects of salt stress on nasturtium’s growth and physiology. A completely randomized factorial design was employed, testing five levels of electrical conductivity (0.0, 1.50, 3.00, 4.5, 6.5 dS m−1) and four proline concentrations (0.0, 5.00, 10.0, 15.0 mM) with six replicates. The results showed that proline application, particularly at 15.0 mM, enhanced growth parameters such as leaf number, stem diameter, and root length. At moderate salinity (3.0 dS m−1), proline significantly improved gas exchange, increasing net photosynthesis, transpiration, and stomatal conductance. Additionally, proline reduced the negative impact of salt stress on the fresh mass of leaves, stems, and roots, and increased both the mass and number of flowers. Proline also elevated the levels of total phenolic compounds and vitamin C while reducing soluble sugars, particularly under moderate salt stress (4.75 dS m−1). Overall, applying 15.0 mM proline shows promise for enhancing the biomass accumulation, flower production, and overall quality of nasturtium under saline conditions. Full article
(This article belongs to the Special Issue Abiotic and Biotic Stress of the Crops and Horticultural Plants)
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22 pages, 15972 KiB  
Article
Regeneration Filter: Enhancing Mosaic Algorithm for Near Salt & Pepper Noise Reduction
by Ratko M. Ivković, Ivana M. Milošević and Zoran N. Milivojević
Sensors 2025, 25(1), 210; https://doi.org/10.3390/s25010210 - 2 Jan 2025
Viewed by 946
Abstract
This paper presents a Regeneration filter for reducing near Salt-and-Pepper (nS&P) noise in images, designed for selective noise removal while simultaneously preserving structural details. Unlike conventional methods, the proposed filter eliminates the need for median or other filters, focusing exclusively on restoring noise-affected [...] Read more.
This paper presents a Regeneration filter for reducing near Salt-and-Pepper (nS&P) noise in images, designed for selective noise removal while simultaneously preserving structural details. Unlike conventional methods, the proposed filter eliminates the need for median or other filters, focusing exclusively on restoring noise-affected pixels through localized contextual analysis in the immediate surroundings. Our approach employs an iterative processing method, where additional iterations do not degrade the image quality achieved after the first filtration, even with high noise densities up to 97% spatial distribution. To ensure the results are measurable and comparable with other methods, the filter’s performance was evaluated using standard image quality assessment metrics. Experimental evaluations across various image databases confirm that our filter consistently provides high-quality results. The code is implemented in the R programming language, and both data and code used for the experiments are available in a public repository, allowing for replication and verification of the findings. Full article
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25 pages, 427 KiB  
Review
Lithium Ions as Modulators of Complex Biological Processes: The Conundrum of Multiple Targets, Responsiveness and Non-Responsiveness, and the Potential to Prevent or Correct Dysregulation of Systems during Aging and in Disease
by David A. Hart
Biomolecules 2024, 14(8), 905; https://doi.org/10.3390/biom14080905 - 25 Jul 2024
Cited by 1 | Viewed by 2525
Abstract
Lithium is one of the lightest elements on Earth and it has been in the environment since the formation of the galaxy. While a common element, it has not been found to be an essential element in biological processes, ranging from single cell [...] Read more.
Lithium is one of the lightest elements on Earth and it has been in the environment since the formation of the galaxy. While a common element, it has not been found to be an essential element in biological processes, ranging from single cell organisms to Homo sapiens. Instead, at an early stage of evolution, organisms committed to a range of elements such as sodium, potassium, calcium, magnesium, zinc, and iron to serve essential functions. Such ions serve critical functions in ion channels, as co-factors in enzymes, as a cofactor in oxygen transport, in DNA replication, as a storage molecule in bone and liver, and in a variety of other roles in biological processes. While seemingly excluded from a major essential role in such processes, lithium ions appear to be able to modulate a variety of biological processes and “correct” deviation from normal activity, as a deficiency of lithium can have biological consequences. Lithium salts are found in low levels in many foods and water supplies, but the effectiveness of Li salts to affect biological systems came to recent prominence with the work of Cade, who reported that administrating Li salts calmed guinea pigs and was subsequently effective at relatively high doses to “normalize” a subset of patients with bipolar disorders. Because of its ability to modulate many biological pathways and processes (e.g., cyclic AMP, GSK-3beta, inositol metabolism, NaK ATPases, neuro processes and centers, immune-related events, respectively) both in vitro and in vivo and during development and adult life, Li salts have become both a useful tool to better understand the molecular regulation of such processes and to also provide insights into altered biological processes in vivo during aging and in disease states. While the range of targets for lithium action supports its possible role as a modulator of biological dysregulation, it presents a conundrum for researchers attempting to elucidate its specific primary target in different tissues in vivo. This review will discuss aspects of the state of knowledge regarding some of the systems that can be influenced, focusing on those involving neural and autoimmunity as examples, some of the mechanisms involved, examples of how Li salts can be used to study model systems, as well as suggesting areas where the use of Li salts could lead to additional insights into both disease mechanisms and natural processes at the molecular and cell levels. In addition, caveats regarding lithium doses used, the strengths and weaknesses of rodent models, the background genetics of the strain of mice or rats employed, and the sex of the animals or the cells used, are discussed. Low-dose lithium may have excellent potential, alone or in combination with other interventions to prevent or alleviate aging-associated conditions and disease progression. Full article
19 pages, 7974 KiB  
Article
Genome-Wide Identification of GRAS Transcription Factors and Their Functional Analysis in Salt Stress Response in Sugar Beet
by Xiaolin Hao, Yongyong Gong, Sixue Chen, Chunquan Ma and Huizi Duanmu
Int. J. Mol. Sci. 2024, 25(13), 7132; https://doi.org/10.3390/ijms25137132 - 28 Jun 2024
Cited by 4 | Viewed by 1515
Abstract
GAI-RGA-and-SCR (GRAS) transcription factors can regulate many biological processes such as plant growth and development and stress defense, but there are few related studies in sugar beet. Salt stress can seriously affect the yield and quality of sugar beet (Beta vulgaris). [...] Read more.
GAI-RGA-and-SCR (GRAS) transcription factors can regulate many biological processes such as plant growth and development and stress defense, but there are few related studies in sugar beet. Salt stress can seriously affect the yield and quality of sugar beet (Beta vulgaris). Therefore, this study used bioinformatics methods to identify GRAS transcription factors in sugar beet and analyzed their structural characteristics, evolutionary relationships, regulatory networks and salt stress response patterns. A total of 28 BvGRAS genes were identified in the whole genome of sugar beet, and the sequence composition was relatively conservative. According to the topology of the phylogenetic tree, BvGRAS can be divided into nine subfamilies: LISCL, SHR, PAT1, SCR, SCL3, LAS, SCL4/7, HAM and DELLA. Synteny analysis showed that there were two pairs of fragment replication genes in the BvGRAS gene, indicating that gene replication was not the main source of BvGRAS family members. Regulatory network analysis showed that BvGRAS could participate in the regulation of protein interaction, material transport, redox balance, ion homeostasis, osmotic substance accumulation and plant morphological structure to affect the tolerance of sugar beet to salt stress. Under salt stress, BvGRAS and its target genes showed an up-regulated expression trend. Among them, BvGRAS-15, BvGRAS-19, BvGRAS-20, BvGRAS-21, LOC104892636 and LOC104893770 may be the key genes for sugar beet’s salt stress response. In this study, the structural characteristics and biological functions of BvGRAS transcription factors were analyzed, which provided data for the further study of the molecular mechanisms of salt stress and molecular breeding of sugar beet. Full article
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15 pages, 6362 KiB  
Article
Optimising Lead–Air Battery Performance through Innovative Open-Cell Foam Anodes
by Amel Hind Hassein-Bey, Abd-Elmouneïm Belhadj, Selma Toumi, Hichem Tahraoui, Mohammed Kebir, Abdeltif Amrane, Derradji Chebli, Abdallah Bouguettoucha, Meriem Zamouche and Jie Zhang
Designs 2024, 8(4), 61; https://doi.org/10.3390/designs8040061 - 21 Jun 2024
Viewed by 1371
Abstract
In the dynamic realm of sustainable energy storage technologies, the global research landscape presents myriad scientific and economic challenges. The erratic growth of renewable energies alongside the phasing out of conventional power plants poses a significant hurdle in maintaining a stable balance between [...] Read more.
In the dynamic realm of sustainable energy storage technologies, the global research landscape presents myriad scientific and economic challenges. The erratic growth of renewable energies alongside the phasing out of conventional power plants poses a significant hurdle in maintaining a stable balance between energy supply and demand. Consequently, energy storage solutions play a pivotal role in mitigating substantial fluctuations in demand. Metal–air batteries, distinguished by their superior energy density and enhanced safety profile compared to other storage devices, emerge as promising solutions. Leveraging the well-established lead–acid battery technology, this study introduces a novel approach utilising open-cell foam manufactured through the Excess Salt Replication process as an anode for lead–air battery cells. This innovation not only conserves lead but also reduces battery weight. By employing a 25% antimonial lead alloy, open-cell foams with diameters ranging from 2 mm to 5 mm were fabricated for the antimonial lead–air battery. Preliminary findings suggest that the effective electrical conductivity of primary battery cells, measured experimentally, surpasses that of cells composed of the same dense, non-porous antimonial lead alloy. This improvement is primarily attributed to their extensive specific surface area, facilitating oxidation–reduction reactions. A correlation between effective electrical conductivity and cell diameter is established, indicating optimal conductivity achieved with a 5 mm cell diameter. These results underscore the feasibility of implementing such an electrical system. Full article
(This article belongs to the Special Issue Design and Manufacture of Electric Vehicles)
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15 pages, 2906 KiB  
Article
Alleviating Salt Stress in Tomatoes through Seed Priming with Polyethylene Glycol and Sodium Chloride Combination
by Nasratullah Habibi, Naoki Terada, Atsushi Sanada and Kaihei Koshio
Stresses 2024, 4(2), 210-224; https://doi.org/10.3390/stresses4020012 - 28 Mar 2024
Cited by 9 | Viewed by 2711
Abstract
Tomato cultivation grapples with salt stress, disrupting growth parameters and physiological processes. High salinity levels induce osmotic stress, impacting cellular integrity and hindering metabolic activities. Salt accumulation at the root zone alters key physiological attributes, compromising overall harvestable output. Seed priming emerges as [...] Read more.
Tomato cultivation grapples with salt stress, disrupting growth parameters and physiological processes. High salinity levels induce osmotic stress, impacting cellular integrity and hindering metabolic activities. Salt accumulation at the root zone alters key physiological attributes, compromising overall harvestable output. Seed priming emerges as a potential solution to enhance plant resilience. A research gap exists in understanding the combined influence of polyethylene glycol and sodium chloride as seed priming agents under salt stress conditions. The study occurred in the Greenhouse of Laboratory Horticultural Science at Tokyo University of Agriculture. Micro Tom seeds underwent a factorial randomized design, involving five salinity and four priming treatments. Replicated ten times, totaling 200 plants, seed priming used polyethylene glycol, inducing salinity stress with sodium chloride. Meticulous measurements of growth parameters, photosynthetic traits, yield attributes, and electrolyte leakage were conducted. Statistical analyses discerned treatment effects at a 5% significance level. Seed priming, especially with ‘PEG plus NaCl’, effectively mitigated salt stress effects on tomato plants. Under severe salt stress, primed plants exhibited increased plant height, trusses, leaves, and leaf area. Photosynthetic efficiency and yield attributes demonstrated significant improvements with seed priming. Electrolyte leakage, indicative of leaf damage, was notably reduced by seed priming treatments, with ‘PEG plus NaCl’ exhibiting the highest efficacy. These results offer valuable guidance for optimizing agricultural practices in saline environments, contributing to sustainable strategies for food security amidst escalating environmental challenges. Full article
(This article belongs to the Section Plant and Photoautotrophic Stresses)
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22 pages, 3233 KiB  
Article
Let’s Do It for Real: Making the Ecosystem Service Concept Operational in Regional Planning for Climate Change Adaptation
by Alessandra Longo, Linda Zardo, Denis Maragno, Francesco Musco and Benjamin Burkhard
Sustainability 2024, 16(2), 483; https://doi.org/10.3390/su16020483 - 5 Jan 2024
Cited by 9 | Viewed by 2681
Abstract
The application of ecosystem service (ES) knowledge to planning processes and decision-making can lead to more effective climate change adaptation. Despite the increased attention given to the ES concept, its degree of integration and use in spatial planning processes are still below the [...] Read more.
The application of ecosystem service (ES) knowledge to planning processes and decision-making can lead to more effective climate change adaptation. Despite the increased attention given to the ES concept, its degree of integration and use in spatial planning processes are still below the expectations of those who are promoting this concept. Barriers hindering its operationalisation cover a span of aspects ranging from theoretical to procedural and methodological issues. Overall, there is a general lack of guidance on how and at what point ES knowledge should be integrated into planning processes. This study aims to promote the inclusion of ES knowledge into spatial planning practices and decision-making processes to enhance climate change adaptation. A replicable GIS-based methodology is proposed. First, the potential supply of ESs that can support climate change adaptation (ESCCAs) is defined, mapped, and quantified. Then, a need for an ESCCA supply is identified, and territorial capacities to respond to the expected climate change impacts on natural and socio-economic sectors are assessed. The methodology is applied to the Friuli Venezia Giulia Autonomous Region (Italy) as an illustrative case study. The results reveal that areas with similar geomorphological characteristics tend to respond similarly. Forest ecosystems, inland wetlands and specifically salt marshes can potentially supply a greater variety of ESCCAs. In the case study area, about 62% of the supplied ESCCAs can contribute to reducing the impacts in more than 50% of the impacted sectors. The territory of the study site generally shows good preparedness for expected impacts in most of the analysed sectors; less prepared areas are characterised by agricultural ecosystems. This reading approach based on land cover analyses can thus assist in developing policies to enhance different territorial capacities, ultimately leading to better and more sustainable decision-making. Full article
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16 pages, 2055 KiB  
Article
The Uptake of Engineered Nanoparticles by Sludge Particulates
by Soohoon Choi, Murray Johnston, Gen-Shuh Wang and Chin-Pao Huang
Water 2023, 15(16), 2872; https://doi.org/10.3390/w15162872 - 9 Aug 2023
Cited by 2 | Viewed by 1765
Abstract
The aim of the study was to understand the removal characteristics of engineered nanoparticles (ENP) from sludge treatment processes in wastewater treatment plants (WWTP). Removal of ENP (TiO2, ZnO) was tested on primary and secondary sludge, using differential sedimentation experiments to [...] Read more.
The aim of the study was to understand the removal characteristics of engineered nanoparticles (ENP) from sludge treatment processes in wastewater treatment plants (WWTP). Removal of ENP (TiO2, ZnO) was tested on primary and secondary sludge, using differential sedimentation experiments to quantify the attachment of ENP to sludge particulates. To better understand the attachment characteristics, aquatic conditions such as mixed liquid suspended solid concentration, and Ionic strength of the wastewater, were varied to replicate different field conditions of WWTPs. Results showed different degrees of multilayer attachment to sludge surfaces based on the experimental conditions. To verify the effect of ENP surface characters with the sludge attachment, SiO2, ZnO, and TiO2 were tested, showing SiO2 with the highest amount of attachment regardless of its surface charge. With the variation of sludge concentration, up to four degrees of magnitude in sorption was observed. Salt concentrations also showed high impacts on the sorption, where the sorption is decreased by half when doubling the salt concentration. The findings of the current research may aid in understanding the fate of engineered nanoparticles in wastewater treatment plants. Full article
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21 pages, 12435 KiB  
Article
Salinity Modeling Using Deep Learning with Data Augmentation and Transfer Learning
by Siyu Qi, Minxue He, Raymond Hoang, Yu Zhou, Peyman Namadi, Bradley Tom, Prabhjot Sandhu, Zhaojun Bai, Francis Chung, Zhi Ding, Jamie Anderson, Dong Min Roh and Vincent Huynh
Water 2023, 15(13), 2482; https://doi.org/10.3390/w15132482 - 6 Jul 2023
Cited by 9 | Viewed by 3360
Abstract
Salinity management in estuarine systems is crucial for developing effective water-management strategies to maintain compliance and understand the impact of salt intrusion on water quality and availability. Understanding the temporal and spatial variations of salinity is a keystone of salinity-management practices. Process-based numerical [...] Read more.
Salinity management in estuarine systems is crucial for developing effective water-management strategies to maintain compliance and understand the impact of salt intrusion on water quality and availability. Understanding the temporal and spatial variations of salinity is a keystone of salinity-management practices. Process-based numerical models have been traditionally used to estimate the variations in salinity in estuarine environments. Advances in data-driven models (e.g., deep learning models) make them effective and efficient alternatives to process-based models. However, a discernible research gap exists in applying these advanced techniques to salinity modeling. The current study seeks to address this gap by exploring the innovative use of deep learning with data augmentation and transfer learning in salinity modeling, exemplified at 23 key salinity locations in the Sacramento–San Joaquin Delta which is the hub of the water-supply system of California. Historical, simulated (via a hydrodynamics and water quality model), and perturbed (to create a range of hydroclimatic and operational scenarios for data-augmentation purposes) flow, and salinity data are used to train a baseline multi-layer perceptron (MLP) and a deep learning Residual Long-Short-Term Memory (Res-LSTM) network. Four other deep learning models including LSTM, Residual Network (ResNet), Gated Recurrent Unit (GRU), and Residual GRU (Res-GRU) are also examined. Results indicate that models pre-trained using augmented data demonstrate improved performance over models trained from scratch using only historical data (e.g., median Nash–Sutcliffe efficiency increased from around 0.5 to above 0.9). Moreover, the five deep learning models further boost the salinity estimation performance in comparison with the baseline MLP model, though the performance of the latter is acceptable. The models trained using augmented data are then (a) used to develop a web-based Salinity Dashboard (Dashboard) tool that allows the users (including those with no machine learning background) to quickly screen multiple management scenarios by altering inputs and visualizing the resulting salinity simulations interactively, and (b) transferred and adapted to estimate observed salinity. The study shows that transfer learning results more accurately replicate the observations compared to their counterparts from models trained from scratch without knowledge learned and transferred from augmented data (e.g., median Nash–Sutcliffe efficiency increased from around 0.4 to above 0.9). Overall, the study illustrates that deep learning models, particularly when pre-trained using augmented data, are promising supplements to existing process-based models in estuarine salinity modeling, while the Dashboard enables user engagement with those pre-trained models to inform decision-making efficiently and effectively. Full article
(This article belongs to the Special Issue Water Quality Modeling and Monitoring II)
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18 pages, 1592 KiB  
Article
Correlated Target Search by Vaccinia Virus Uracil–DNA Glycosylase, a DNA Repair Enzyme and a Processivity Factor of Viral Replication Machinery
by Evgeniia A. Diatlova, Grigory V. Mechetin, Anna V. Yudkina, Vasily D. Zharkov, Natalia A. Torgasheva, Anton V. Endutkin, Olga V. Shulenina, Andrey L. Konevega, Irina P. Gileva, Sergei N. Shchelkunov and Dmitry O. Zharkov
Int. J. Mol. Sci. 2023, 24(11), 9113; https://doi.org/10.3390/ijms24119113 - 23 May 2023
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Abstract
The protein encoded by the vaccinia virus D4R gene has base excision repair uracil–DNA N-glycosylase (vvUNG) activity and also acts as a processivity factor in the viral replication complex. The use of a protein unlike PolN/PCNA sliding clamps is a unique feature [...] Read more.
The protein encoded by the vaccinia virus D4R gene has base excision repair uracil–DNA N-glycosylase (vvUNG) activity and also acts as a processivity factor in the viral replication complex. The use of a protein unlike PolN/PCNA sliding clamps is a unique feature of orthopoxviral replication, providing an attractive target for drug design. However, the intrinsic processivity of vvUNG has never been estimated, leaving open the question whether it is sufficient to impart processivity to the viral polymerase. Here, we use the correlated cleavage assay to characterize the translocation of vvUNG along DNA between two uracil residues. The salt dependence of the correlated cleavage, together with the similar affinity of vvUNG for damaged and undamaged DNA, support the one-dimensional diffusion mechanism of lesion search. Unlike short gaps, covalent adducts partly block vvUNG translocation. Kinetic experiments show that once a lesion is found it is excised with a probability ~0.76. Varying the distance between two uracils, we use a random walk model to estimate the mean number of steps per association with DNA at ~4200, which is consistent with vvUNG playing a role as a processivity factor. Finally, we show that inhibitors carrying a tetrahydro-2,4,6-trioxopyrimidinylidene moiety can suppress the processivity of vvUNG. Full article
(This article belongs to the Special Issue Recent Advances in Genome Maintenance Studies)
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