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Search Results (213)

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Keywords = quantitative and qualitative traits

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19 pages, 3772 KiB  
Article
Phenotypic Diversity Analysis and Integrative Evaluation of Camellia oleifera Germplasm Resources in Ya’an, Sichuan Province
by Shiheng Zheng, Qingbo Kong, Hanrui Yan, Junjie Liu, Renke Tang, Lijun Zhou, Hongyu Yang, Xiaoyu Jiang, Shiling Feng, Chunbang Ding and Tao Chen
Plants 2025, 14(14), 2249; https://doi.org/10.3390/plants14142249 - 21 Jul 2025
Viewed by 213
Abstract
As a unique woody oil crop in China, Camellia oleifera Abel. germplasm resources show significant genetic diversity in Ya’an City. This study measured 60 phenotypic traits (32 quantitative, 28 qualitative) of 302 accessions to analyze phenotypic variation, establish a classification system, and screen [...] Read more.
As a unique woody oil crop in China, Camellia oleifera Abel. germplasm resources show significant genetic diversity in Ya’an City. This study measured 60 phenotypic traits (32 quantitative, 28 qualitative) of 302 accessions to analyze phenotypic variation, establish a classification system, and screen high-yield, high-oil germplasms. The phenotypic diversity index for fruit (H’ = 1.36–1.44) was significantly higher than for leaf (H’ = 1.31) and flower (H’ < 1), indicating genetic diversity concentrated in reproductive traits, suggesting potential genetic variability in these traits. Fruit quantitative traits (e.g., single fruit weight CV = 35.37%, fresh seed weight CV = 38.93%) showed high genetic dispersion. Principal component analysis confirmed the fruit factor and economic factor as main phenotypic differentiation drivers. Quantitative traits were classified morphologically, and correlation analysis integrated them into 13 key indicators classified using LSD and range methods. Finally, TOPSIS evaluation selected 10 excellent germplasms like TQ122 and TQ49, with fruit weight, fresh seed yield, and kernel oil content significantly exceeding the population average. This study provides data for C. oleifera DUS test guidelines and proposes a multi-trait breeding strategy, supporting high-yield variety selection and germplasm resource protection. Full article
(This article belongs to the Special Issue Genetic Diversity and Germplasm Innovation in Woody Oil Crops)
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44 pages, 15871 KiB  
Article
Space Gene Quantification and Mapping of Traditional Settlements in Jiangnan Water Town: Evidence from Yubei Village in the Nanxi River Basin
by Yuhao Huang, Zibin Ye, Qian Zhang, Yile Chen and Wenkun Wu
Buildings 2025, 15(14), 2571; https://doi.org/10.3390/buildings15142571 - 21 Jul 2025
Viewed by 116
Abstract
The spatial genes of rural settlements show a lot of different traditional settlement traits, which makes them a great starting point for studying rural spatial morphology. However, qualitative and macro-regional statistical indicators are usually used to find and extract rural settlement spatial genes. [...] Read more.
The spatial genes of rural settlements show a lot of different traditional settlement traits, which makes them a great starting point for studying rural spatial morphology. However, qualitative and macro-regional statistical indicators are usually used to find and extract rural settlement spatial genes. Taking Yubei Village in the Nanxi River Basin as an example, this study combined remote sensing images, real-time drone mapping, GIS (geographic information system), and space syntax, extracted 12 key indicators from five dimensions (landform and water features (environment), boundary morphology, spatial structure, street scale, and building scale), and quantitatively “decoded” the spatial genes of the settlement. The results showed that (1) the settlement is a “three mountains and one water” pattern, with cultivated land accounting for 37.4% and forest land accounting for 34.3% of the area within the 500 m buffer zone, while the landscape spatial diversity index (LSDI) is 0.708. (2) The boundary morphology is compact and agglomerated, and locally complex but overall orderly, with an aspect ratio of 1.04, a comprehensive morphological index of 1.53, and a comprehensive fractal dimension of 1.31. (3) The settlement is a “clan core–radial lane” network: the global integration degree of the axis to the holy hall is the highest (0.707), and the local integration degree R3 peak of the six-room ancestral hall reaches 2.255. Most lane widths are concentrated between 1.2 and 2.8 m, and the eaves are mostly higher than 4 m, forming a typical “narrow lanes and high houses” water town streetscape. (4) The architectural style is a combination of black bricks and gray tiles, gable roofs and horsehead walls, and “I”-shaped planes (63.95%). This study ultimately constructed a settlement space gene map and digital library, providing a replicable quantitative process for the diagnosis of Jiangnan water town settlements and heritage protection planning. Full article
(This article belongs to the Section Architectural Design, Urban Science, and Real Estate)
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18 pages, 3234 KiB  
Article
Optimization of Hydroponic Wheat Sprouts as an Alternative Livestock Feed: Yield and Biochemical Composition Under Different Fertilization Regimes
by Andrius Grigas, Dainius Steponavičius, Indrė Bručienė, Ričardas Krikštolaitis, Tomas Krilavičius, Aušra Steponavičienė and Dainius Savickas
Plants 2025, 14(14), 2166; https://doi.org/10.3390/plants14142166 - 14 Jul 2025
Viewed by 264
Abstract
This study investigated the effects of macronutrient type and concentration on the biomass yield and biochemical composition of hydroponically grown wheat sprouts (HWS), with the aim of identifying fertilization strategies that optimize both productivity and feed quality. HWS were cultivated using a nutrient [...] Read more.
This study investigated the effects of macronutrient type and concentration on the biomass yield and biochemical composition of hydroponically grown wheat sprouts (HWS), with the aim of identifying fertilization strategies that optimize both productivity and feed quality. HWS were cultivated using a nutrient film technique over a 7-day period under controlled environmental conditions, with treatments including calcium nitrate (CN1–CN3), potassium phosphate (CP1–CP3), potassium sulfate (CK1–CK2), and a balanced NPK 20–20–20 fertilizer (NPK1–NPK3), each applied at three increasing concentrations. The quantitative parameters assessed included biomass yield per unit of dry seed (DP, kg kg−1) and dry matter content (DM, %), while qualitative traits included crude protein (CP), ether extract (EE), crude fiber (CF), and ash content. Results indicated that balanced NPK fertilization significantly enhanced performance, with NPK3 achieving the highest biomass yield (6.39 kg kg−1), CP (24.26%), CF (5.63%), and ash (16.0%) content. In contrast, CN3 treatments reduced yield (4.84 kg kg−1) despite increasing CP (19.65%), indicating trade-offs between nitrogen enrichment and vegetative expansion. Phosphorus-based treatments (CP2–CP3) improved nutrient density without suppressing yield. Regression analyses revealed strong correlations between DM and both CF (R2 = 0.81) and ash (R2 = 0.71), supporting their utility as indirect indicators of feed quality. EE content remained stable (2.07–2.67%) across all treatments, suggesting its limited responsiveness to macronutrient manipulation. These findings highlight the importance of nutrient synergy in hydroponic systems and provide a practical framework for tailoring fertilization regimes to meet specific agronomic and nutritional objectives in precision livestock feeding and provide practical guidance for optimizing hydroponic livestock feed production. Full article
(This article belongs to the Special Issue Strategies for Nutrient Use Efficiency Improvement in Plants)
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29 pages, 4367 KiB  
Article
Endophytic Microbiome Is a Unique Repository of Bio-Foes Against Toxigenic Fungi Harming Peanut Productivity
by Nagwa I. M. Helal, Mona H. Badawi, Abeer M. El-Hadidy, Mohamed K. M. Agha, Ahmed Abou-Shady and Mohamed Fayez
Microbiol. Res. 2025, 16(7), 141; https://doi.org/10.3390/microbiolres16070141 - 1 Jul 2025
Viewed by 285
Abstract
The major objective was to investigate the protective capabilities of endophytic bacterial strains isolated from a number of medicinal plant species towards Aspergillus spp. secured from the internal tissues of fungi-infected peanuts. Among 32 fungal isolates surveyed for mycotoxin production in various culture [...] Read more.
The major objective was to investigate the protective capabilities of endophytic bacterial strains isolated from a number of medicinal plant species towards Aspergillus spp. secured from the internal tissues of fungi-infected peanuts. Among 32 fungal isolates surveyed for mycotoxin production in various culture media (PDA, RBCA, YES, CA), 10 isolates qualitatively producing AFB1, besides 10 OTA-producers, were assayed by HPLC for quantitative toxin production. Aspergillus spp. isolate Be 13 produced an extraordinary quantity of 1859.18 μg mL−1 AFB1, against the lowest toxin level of 280.40 μg mL−1 produced by the fungus isolate IS 4. The estimated amounts of OTA were considerably lower and fell in the range 0.88–6.00 μg mL−1; isolate Sa 1 was superior, while isolate Be 7 seemed inferior. Based on ITS gene sequencing, the highly toxigenic Aspergillus spp. isolates Be 13 and Sa 1 matched the description of A. novoparasiticus and A. ochraceus, respectively, ochraceus, respectively, which are present in GenBank with identity exceeding 99%. According to 16S rRNA gene sequencing, these antagonists labeled Ar6, Ma27 and So34 showed the typical characteristics of Pseudomonas aeruginosa, Bacillus subtilis and Bacillus velezensis, respectively, with similarity percentages of 99–100. The plant growth-promoting activity measurements of the identified endophytes indicated the production of 16.96–80.00 μg/100 mL culture medium of IAA. Phosphate-solubilizing capacity varied among endophytes from 2.50 to 21.38 μg/100 mL. The polysaccharide production pool of bacterial strains ranged between 2.74 and 6.57 mg mL−1. P. aeruginosa Ar6 and B. velezensis successfully produced HCN, but B. subtilis failed. The in vitro mycotoxin biodegradation potential of tested bacterial endophytes indicated the superiority of B. velezensis in degrading both mycotoxins (AFB1-OTA) with average percentage of 88.7; B. subtilis ranked thereafter (85.6%). The 30-day old peanut (cv. Giza 6) seedlings grown in gnotobiotic system severely injured due to infection with AFB1/OTA-producing fungi, an effect expressed in significant reductions in shoot and root growth traits. Simultaneous treatment with the endophytic antagonists greatly diminished the harmful impact of the pathogens; B. velezensis was the pioneer, not P. aeruginosa Ar6. In conclusion, these findings proved that several endophytic bacterial species have the potential as alternative tools to chemical fungicides for protecting agricultural commodities against mycotoxin-producing fungi. Full article
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16 pages, 1240 KiB  
Article
The Effect of Zinc Oxide Nanoparticles on the Quantitative and Qualitative Traits of Scutellaria baicalensis Georgi in In Vitro Culture
by Anna Krzepiłko, Roman Prażak, Agata Święciło and Jacek Gawroński
Int. J. Mol. Sci. 2025, 26(12), 5836; https://doi.org/10.3390/ijms26125836 - 18 Jun 2025
Viewed by 299
Abstract
Zinc oxide nanoparticles (ZnONPs) are increasingly used in agriculture to stimulate plant growth and development, including under in vitro culture conditions. However, there is limited data on the effects of ZnONPs on the micropropagation of Scutellaria baicalensis Georgi. The pharmacological properties of this [...] Read more.
Zinc oxide nanoparticles (ZnONPs) are increasingly used in agriculture to stimulate plant growth and development, including under in vitro culture conditions. However, there is limited data on the effects of ZnONPs on the micropropagation of Scutellaria baicalensis Georgi. The pharmacological properties of this species make it a valuable medicinal plant. In Poland, it does not occur naturally but is cultivated for the production of herbal material. In vitro micropropagation is an effective method for obtaining genetically uniform plantlets. The aim of this study was to evaluate the effects of various concentrations of ZnONPs on growth parameters and the content of mineral nutrients, phenolic compounds, antioxidants, and photosynthetic pigments in Scutellaria baicalensis cultured in vitro. Shoot tip explants were cultured on MS medium supplemented with 1.0 mg dm−3 BA and 0.1 mg dm−3 IBA, together with ZnONPs at concentrations of 0 (control), 10, 20, 30, and 40 mg dm−3. The results showed that ZnONPs at concentrations of 10–20 mg dm−3 had no statistically significant effect on shoot or root development or on fresh weight gain. However, higher concentrations (30 and 40 mg dm−3) had a significantly negative impact on the number and length of shoots and roots, as well as on biomass accumulation. ZnONPs at 10–20 mg dm−3 significantly increased the content of potassium, calcium, magnesium, iron, and zinc in regenerated multi-shoot plantlets. A strong positive correlation (r = 0.951) was observed between ZnONP concentration and zinc accumulation in the plantlets. The levels of manganese and copper were not significantly different from the control. Plantlets treated with 30–40 mg dm−3 ZnONPs had significantly lower levels of calcium, iron, manganese, and copper. Those grown at 30 mg dm−3 had the highest potassium and magnesium levels, while plantlets exposed to 40 mg dm−3 had the highest zinc content. The total phenolic content and antioxidant activity (measured using ABTS and DPPH assays) were significantly higher in ZnONP-treated plantlets compared to the control. In contrast, the levels of chlorophyll a, chlorophyll b, total chlorophyll (a + b), and carotenoids were significantly lower in plants treated with ZnONPs. A strong negative correlation was found between ZnONP concentration and photosynthetic pigment content, while the ZnONP concentration was positively correlated with total phenolic content and antioxidant activity (ABTS+ and DPPH). Full article
(This article belongs to the Special Issue Toxicity of Nanoparticles)
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14 pages, 1653 KiB  
Article
Threshold Effects of Nitrogen Fertilization Rates on Growth and Essential Oil Yield with Component Regulation in Cinnamomum camphora var. linaloolifera
by Zhirong Liu, Xinyi Chen, Jiao Zhao, Luyuan Sun, Jian Guo, Yangyang Shao, Jia Liu, Lei Zhong, Haiyan Zhang, Yanbo Wang and Jie Zhang
Agronomy 2025, 15(6), 1387; https://doi.org/10.3390/agronomy15061387 - 5 Jun 2025
Viewed by 434
Abstract
The determination of an optimal nitrogen (N) fertilization rate is critical for the sustainable large-scale cultivation of Cinnamomum camphora var. linaloolifera for essential oil production. Both suboptimal and excessive nitrogen inputs can adversely affect plant sustainable development and essential oil biosynthesis, underscoring the [...] Read more.
The determination of an optimal nitrogen (N) fertilization rate is critical for the sustainable large-scale cultivation of Cinnamomum camphora var. linaloolifera for essential oil production. Both suboptimal and excessive nitrogen inputs can adversely affect plant sustainable development and essential oil biosynthesis, underscoring the necessity of precise nutrient management. This study investigated the effects of five N application rates (0, 45, 90, 135, and 180 kg·hm−2) on vegetative growth, essential oil yield, and quality. Growth parameters, including plant height, basal diameter, specific leaf area (SLA), and essential oil yield and yield rate. Oil composition was characterized via gas chromatography–mass spectrometry (GC-MS). The application of 90 kg·hm−2 N significantly enhanced plant height (74.31%), basal diameter (54.95%), SLA (20.91%), and biomass (181.8%) relative to the nitrogen-free control. Nitrogen uptake was concentrated in foliar tissues, accounting for 82.8% of total plant nitrogen accumulation. This fertilization rate also maximized essential oil yield (9.15 g·plant−1) and yield rate (2.44%), reflecting increases of 178.9% and 24.49%, respectively. Linalool was the predominant oil constituent (89.84–91.81%), with its highest concentration observed at the 90 kg·hm−2 treatment. At this rate, the relative abundance of oxygenated compounds increased by 0.97%, while hydrocarbon content decreased by 0.62%, indicating a qualitative improvement in oil composition. The findings reveal a threshold response to nitrogen input, wherein rates exceeding 90 kg·hm−2 did not confer further benefits and may reduce efficiency. Collectively, these results suggest that a nitrogen application rate of 90 kg·hm−2 optimally enhances vegetative growth, nitrogen assimilation, and both the quantitative and qualitative traits of essential oils in C. camphora var. linaloolifera. Full article
(This article belongs to the Section Soil and Plant Nutrition)
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35 pages, 2926 KiB  
Article
The Morphological and Ecogeographic Characterization of the Musa L. Collection in the Gene Bank of INIAP, Ecuador
by Nelly Avalos Poaquiza, Ramiro Acurio Vásconez, Luis Lima Tandazo, Álvaro Monteros-Altamirano, César Tapia Bastidas, Sigcha Morales Franklin, Marten Sørensen and Nelly Paredes Andrade
Crops 2025, 5(3), 34; https://doi.org/10.3390/crops5030034 - 3 Jun 2025
Viewed by 495
Abstract
The genus Musa L. is one of the most important genera worldwide due to its use in food as a source of carbohydrates. A morphological characterization was performed to evaluate the potential of 100 accessions of Musa spp. from the Amazon region of [...] Read more.
The genus Musa L. is one of the most important genera worldwide due to its use in food as a source of carbohydrates. A morphological characterization was performed to evaluate the potential of 100 accessions of Musa spp. from the Amazon region of Ecuador, applying 73 qualitative and quantitative descriptors in addition to the ecogeographic characterization. The multivariate analyses identified four large groups: The first is composed of the Musa AAB Simmonds ecotype “Hartón Plantain” and the “Cuerno Clone”. The second group is composed of the Musa acuminata Colla ecotype “Orito”. The third group is composed of the Musa acuminata ecotype “Malay plantain or red plantain”; and the fourth group is composed of the Musa × paradisiaca L. AAB ecotype “Barraganete” and banana or banana materials and the Musa AAB Simmonds ecotype “Plátano Dominico”. The qualitative descriptors with the highest discriminant value were the shape of the ♂ floret bud, the appearance of the rachis, and the pigmentation of the compound tepal, and the quantitative discriminant characters were the height of the pseudostem, the length of the leaf blade, the width of the leaf blade, and the weight of the raceme. The analysis with CAPFITOGEN of these 100 accessions through the ecogeographic characterization map identified 23 categories, highlighting category 20 with a coverage of 40.35%, which mainly includes the provinces of Orellana, Sucumbíos, part of Napo, Pastaza, and Morona Santiago. This category occurs within an annual temperature range between 21.6 °C and 27 °C, an apparent density of 1.25 to 1.44 g cm−3, and a cation exchange capacity (CEC) of 4 to 29 Cmol kg−1. The morphological characterization of 100 Musa accessions revealed significant phenotypic variability, with four distinct morphological groups identified through cluster analysis. Key differences were observed in traits such as bunch weight, fruit length, and vegetative vigor. This variability highlights the potential of certain accessions for use in genetic improvement programs. The findings contribute valuable information for the efficient conservation, selection, and utilization of the Musa germplasm in Ecuadorian agroecosystems. The results demonstrate the existence of an important genetic variability in the INIAP Musa Germplasm Bank in the Ecuadorian Amazon region. Full article
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14 pages, 407 KiB  
Article
Biogeographic Variation Analysis of Phenotypic and Nutritional Quality Traits of Cultured Conger myriaster Along the Yellow Sea Coast of China
by Yan Chen, Meijun Tao, Bao Shi, Shenglei Han, Binghua Liu, Lianshun Wang, Kewen Yan, Xinyu Zhao and Mingze Liu
Fishes 2025, 10(6), 266; https://doi.org/10.3390/fishes10060266 - 3 Jun 2025
Viewed by 380
Abstract
Aquaculture has become increasingly important as a source of high-quality animal protein and fatty acids for humans. This study investigated the morphological traits, general nutritional component, amino acid composition, fatty acid composition, and antioxidant enzyme activity of artificially cultured whitespotted conger Conger myriaster [...] Read more.
Aquaculture has become increasingly important as a source of high-quality animal protein and fatty acids for humans. This study investigated the morphological traits, general nutritional component, amino acid composition, fatty acid composition, and antioxidant enzyme activity of artificially cultured whitespotted conger Conger myriaster from three different suppliers, Haiyang Yellow Sea Fisheries Co., Ltd. (YT), Rizhao Rongwang aquatic science and technology Co., Ltd. (RZ), and Weihai Shenghang aquatic science and technology Co., Ltd. (WH), based on the Yellow Sea coast in China. Of the 19 morphological traits, total length, body length, and vertical eye diameter were significantly different in the C. myriaster of YT, RZ, and WH (p < 0.05). The hepatosomatic index (HSI) of YT was significantly lower than that of RZ and WH (p < 0.05), and the gonadosomatic index (GSI) was not significantly different. The moisture, crude lipid, and crude ash contents in YT were significantly different from those in RZ and WH (p < 0.05). The methionine (Met) of RZ was significantly higher than that of YT and WH (p < 0.05). C. myriaster from YT, RZ, and WH were detected to have 26, 27, and 26 fatty acids, respectively. The docosahexaenoic acid (DHA) and eicosapentaenoic acid (EPA) contents of YT were significantly higher than those of RZ and WH (p < 0.05). There were no significant differences in the antioxidant enzyme activities of C. myriaster from YT, RZ and WH (p > 0.05). The results showed that there are differences in the morphological traits, general nutritional component proximate composition, and amino acid and fatty acid compositions of cultured C. myriaster from different regions. Full article
(This article belongs to the Special Issue Environmental Physiology of Aquatic Animals)
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19 pages, 16899 KiB  
Article
GePIF4 Increases the Multi-Flower/Capsule-Bearing Traits and Gastrodin Biosynthesis in Gastrodia elata
by Yue Xu, Zhiqing Wu, Yugang Gao, Pu Zang, Xinyu Yang, Yan Zhao and Qun Liu
Plants 2025, 14(11), 1684; https://doi.org/10.3390/plants14111684 - 31 May 2025
Viewed by 545
Abstract
The degeneration of germplasm is a key factor limiting the yield and quality of Gastrodia elata Blume. Sexual reproduction is a primary method to address this degeneration, while the number of flowers and capsules is directly related to sexual reproduction. However, the genetic [...] Read more.
The degeneration of germplasm is a key factor limiting the yield and quality of Gastrodia elata Blume. Sexual reproduction is a primary method to address this degeneration, while the number of flowers and capsules is directly related to sexual reproduction. However, the genetic mechanisms underlying the high flower/fruit-bearing traits in G. elata remain unclear. We first compared the quantitative and qualitative traits during the flowering to fruiting period of G. elata, including bolting height, flowering quantity, flowering time, fruiting quantity, capsule spacing, seed quality, etc. The natural materials were selected by multi-capsule and few-capsule for transcriptome analysis to screen the differentially expressed genes (DEGs); the candidate gene GePIF4 was suspected to regulate the formation of multiple flowers and fruits. It was confirmed that GePIF4 has multiple biological functions in the overexpression of transgenic lines, including increasing numbers of vegetative propagation corms (VPCs) and promoting the growth of G. elata. Through comparative transcriptomic analysis of EV and OE-GePIF4 transgenic lines, the transcriptional regulatory network of GePIF4 was identified, and transient expression of GePIF4 was demonstrated to significantly promote gastrodin accumulation. The dual-LUC assay and in vitro yeast one hybrid results showed that GePIF4 could directly bind to GeRAX2 to regulate multi-capsule formation, and GePIF4 could directly bind to GeC4H1 to promote gastrodin accumulation. Therefore, we elucidate the role of GePIF4 in multi-capsule formation and secondary metabolite accumulation, thereby laying the groundwork for the genetic improvement of G. elata germplasm resources. Full article
(This article belongs to the Section Plant Molecular Biology)
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14 pages, 4059 KiB  
Article
Phenotypic Characterization and Marker–Trait Association Analysis Using SCoT Markers in Chrysanthemum (Chrysanthemum morifolium Ramat.) Germplasm
by Fenglan Wang, Xiuzhe Chen, Zifeng Huang, Lisha Wei, Jun Wang, Shuang Wen, Yang Liu and Yiwei Zhou
Genes 2025, 16(6), 664; https://doi.org/10.3390/genes16060664 - 29 May 2025
Viewed by 374
Abstract
Background: Chrysanthemum is an economically important ornamental species whose genetic diversity assessment forms the foundation for effective breeding programs. Methods: Phenotypic characterization of 12 traits (7 quantitative and 5 qualitative traits) was conducted alongside SCoT marker analysis to assess genetic diversity and perform [...] Read more.
Background: Chrysanthemum is an economically important ornamental species whose genetic diversity assessment forms the foundation for effective breeding programs. Methods: Phenotypic characterization of 12 traits (7 quantitative and 5 qualitative traits) was conducted alongside SCoT marker analysis to assess genetic diversity and perform marker–trait association analysis in 65 chrysanthemum accessions. Results: Quantitative traits showed 14.81–26.43% variation (peduncle length most variable), while qualitative traits exhibited Shannon–Weiner indices of 0.23–2.28 (flower color most diverse). Phenotypic analyses consistently grouped accessions into two clusters. SCoT markers generated 160 bands (159 polymorphic; 6.957 bands/marker) with high PIC values (0.408–0.896). Molecular analyses also revealed two genetic groups, though with partial discordance to phenotypic clusters. Eight significant marker–trait associations were identified, linking SCoT28/3/30/31/35/20/14/36 to flowering duration, plant height, peduncle diameter, flower color, and pest resistance traits. Conclusions: The study revealed substantial diversity in local chrysanthemum germplasm, with SCoT markers effectively capturing genetic variation. While phenotypic and molecular groupings showed partial mismatch, identified marker–trait associations (e.g., SCoT28 linked to flowering duration) provide practical tools for marker-assisted breeding. Full article
(This article belongs to the Special Issue Genetics and Breeding of Ornamental Plants)
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25 pages, 9203 KiB  
Article
Screening, Identification, and Fermentation of Brevibacillus laterosporus YS-13 and Its Impact on Spring Wheat Growth
by Wenjing Zhang, Xingxin Sun, Zele Wang, Jiayao Li, Yuanzhe Zhang, Wei Zhang, Jun Zhang, Xianghan Cheng and Peng Song
Microorganisms 2025, 13(6), 1244; https://doi.org/10.3390/microorganisms13061244 - 28 May 2025
Viewed by 397
Abstract
The low availability of phosphorus (P) in soil has become a critical factor limiting crop growth and agricultural productivity. This study aimed to isolate and evaluate a bacterial strain with high phosphate-solubilizing capacity to improve soil phosphorus utilization and promote crop growth. A [...] Read more.
The low availability of phosphorus (P) in soil has become a critical factor limiting crop growth and agricultural productivity. This study aimed to isolate and evaluate a bacterial strain with high phosphate-solubilizing capacity to improve soil phosphorus utilization and promote crop growth. A phosphate-solubilizing bacterium, designated as YS-13, was isolated from farmland soil in Henan Province, China, and identified as Brevibacillus laterosporus based on morphological characteristics, physiological and biochemical traits, and 16S rDNA sequence analysis. Qualitative assessment using plate assays showed that strain YS-13 formed a prominent phosphate solubilization zone on organic and inorganic phosphorus media containing lecithin and calcium phosphate, with D/d ratios of 2.28 and 1.57, respectively. Quantitative evaluation using the molybdenum–antimony colorimetric method revealed soluble phosphorus concentrations of 21.24, 6.67, 11.73, and 17.05 mg·L−1 when lecithin, ferric phosphate, calcium phosphate, and calcium phytate were used as phosphorus sources, respectively. The fermentation conditions for YS-13 were optimized through single-factor experiments combined with response surface methodology, using viable cell count as the response variable. The optimal conditions were determined as 34 °C, 8% inoculum volume, initial pH of 7.55, 48 h incubation, 5 g L−1 NaCl, 8.96 g L−1 glucose, and 8.86 g L−1 peptone, under which the viable cell count reached 6.29 × 108 CFU mL−1, consistent with the predicted value (98.33%, p < 0.05). The plant growth-promoting effect of YS-13 was further validated through a pot experiment using Triticum aestivum cv. Jinchun 6. Growth parameters, including plant height, fresh biomass, root length, root surface area, root volume, and phosphorus content in roots and stems, were measured. The results demonstrated that YS-13 significantly enhanced wheat growth, with a positive correlation between bacterial concentration and growth indicators, although the growth-promoting effect plateaued at higher concentrations. This study successfully identified a high-efficiency phosphate-solubilizing strain, YS-13, and established optimal culture conditions and bioassay validation, laying a foundation for its potential application as a microbial inoculant and providing theoretical and technical support for reducing phosphorus fertilizer inputs and advancing sustainable agriculture. Full article
(This article belongs to the Section Plant Microbe Interactions)
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15 pages, 558 KiB  
Systematic Review
Psychiatric Outcomes of Subthalamic Nucleus Deep Brain Stimulation: A Systematic Review of Short- and Long-Term Effects
by Mattia Vittorio Pomes, Giordano D’Urso, Ilaria Bove, Luigi Maria Cavallo, Lorenzo Della Ragione, Carmela Palmiero, Francesco Perrotta, Felice Esposito and Teresa Somma
Brain Sci. 2025, 15(6), 566; https://doi.org/10.3390/brainsci15060566 - 25 May 2025
Viewed by 1031
Abstract
Background/Objectives: Deep Brain Stimulation (DBS) of the subthalamic nucleus (STN) is a widely used intervention for Parkinson’s disease (PD) and obsessive-compulsive disorder (OCD). While motor and OCD symptom benefits are established, increasing evidence highlights psychiatric side effects. The underlying mechanisms involve stimulation [...] Read more.
Background/Objectives: Deep Brain Stimulation (DBS) of the subthalamic nucleus (STN) is a widely used intervention for Parkinson’s disease (PD) and obsessive-compulsive disorder (OCD). While motor and OCD symptom benefits are established, increasing evidence highlights psychiatric side effects. The underlying mechanisms involve stimulation parameters, electrode positioning, and medication adjustments. This systematic review aims to evaluate the short-term and long-term psychiatric effects of STN-DBS and identify influencing factors. Methods: A systematic literature search (PubMed, Scopus, Web of Science, Embase; 2015–2024) was conducted following PRISMA guidelines. Studies examining psychiatric effects of STN-DBS in PD or OCD, reporting quantitative/qualitative psychiatric measures, and specifying stimulation parameters were included. Risk of bias was assessed using the Newcastle-Ottawa Scale (NOS) for observational studies and the Cochrane Risk of Bias Tool for randomized controlled trials (RCTs). Results: A total of 16 studies met the inclusion criteria, with sample sizes from 10 to 149 patients and short- to long-term follow-ups (up to 17 years). Short-term effects included transient hypomania, euphoria, increased impulsivity (especially with medial STN stimulation), and sometimes anxiety reduction. Long-term effects showed a tendency towards apathy and depression (apathy increased significantly in one large cohort), particularly linked to ventromedial STN stimulation or dopaminergic medication reduction. Impulse control disorders (ICDs) improved long-term in one study following medication reduction, while impulsivity slightly worsened in another. Verbal fluency decline was commonly reported, though global cognition often remained stable. Psychiatric outcomes (mood/apathy, attention/memory) depended on stimulation location within STN subregions. Higher total electrical energy delivered (TEED) correlated with depressive trait shifts in one study. Conclusions: STN-DBS has complex psychiatric consequences. Electrode positioning, stimulation parameters (including location within STN subregions and possibly TEED), and medication adjustments significantly influence outcomes. Careful patient selection, preoperative psychiatric screening, optimized programming targeting specific STN subregions, and cautious medication management are essential to minimize psychiatric risks while maximizing therapeutic benefits for motor and OCD symptoms. Full article
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17 pages, 948 KiB  
Article
Revealing the Influence of Rootstock Choice on Clementine Mandarin Leaves and Peel Volatile Profile
by Vasileios Ziogas, Evgenia Panou, Konstantia Graikou, Christos Ganos, Evgenia Ntamposi and Ioanna Chinou
Horticulturae 2025, 11(5), 523; https://doi.org/10.3390/horticulturae11050523 - 13 May 2025
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Abstract
This study investigates the impact of rootstock selection on the essential oil (EO) composition of clementine mandarin (Citrus clementina Hort. ex Tan.) var. SRA 63 cultivated in southern Greece. EOs were extracted from the peel and leaves of trees grafted on four [...] Read more.
This study investigates the impact of rootstock selection on the essential oil (EO) composition of clementine mandarin (Citrus clementina Hort. ex Tan.) var. SRA 63 cultivated in southern Greece. EOs were extracted from the peel and leaves of trees grafted on four commonly used rootstocks: Cleopatra mandarin, sour orange, Troyer citrange, and Swingle citrumelo. The GC-MS analysis revealed significant qualitative and quantitative differences in EO profiles across the different rootstock combinations. In peel EOs, limonene was the dominant compound, particularly in trees grafted onto Cleopatra mandarin and Swingle citrumelo, while Troyer citrange favored a more diverse chemical profile rich in oxygenated monoterpenes, sesquiterpenes, and aldehydes. Leaf EOs were characterized by high levels of sabinene, linalool, and limonene, with Swingle citrumelo promoting sabinene production and Troyer citrange enhancing limonene content and sesquiterpene diversity. Sour orange showed an intermediate effect, increasing both compound diversity and abundance. These results underscore the critical role played by rootstock in modulating the biosynthesis of volatile compounds, likely through physiological and molecular interactions with the scion. These findings offer valuable insights into optimizing EO yield and quality in citriculture and support the broader goal of valorizing Citrus by-products through targeted agricultural practices. This research contributes to the implementation of targeted agricultural practices (rootstock choice) for the development of high-value Citrus-based products with specific quality traits. Full article
(This article belongs to the Section Fruit Production Systems)
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24 pages, 4590 KiB  
Article
Genetic Diversity Analysis of Water Lily Germplasms Based on Morphological Traits and SSR Markers
by Min Wan, Wei Lu, Luxue Gao, Cuiping Li, Hanli Liu, Caibao Zhao and Xingmei Ai
Plants 2025, 14(9), 1365; https://doi.org/10.3390/plants14091365 - 30 Apr 2025
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Abstract
The study was conducted to identify and describe 34 morphological traits from 30 collected tropical water lily germplasms, including both viviparous and non-viviparous water lilies, along with a genetic diversity analysis utilizing 16 selected polymorphic SSR markers. The results revealed significant differences among [...] Read more.
The study was conducted to identify and describe 34 morphological traits from 30 collected tropical water lily germplasms, including both viviparous and non-viviparous water lilies, along with a genetic diversity analysis utilizing 16 selected polymorphic SSR markers. The results revealed significant differences among various water lily germplasms. Specifically, the genetic diversity index for 15 qualitative traits ranged from 0.456 to 1.681, while the index for 19 quantitative traits exceeded 1.5, ranging from 1.532 to 2.024. and the coefficient of variation for these traits varied between 12.11% and 58.88%, indicating that the genetic diversity index of quantitative traits was significantly higher than that of qualitative characteristics. Seven principal components were extracted, accounting for 74.16% of the genetic information. By integrating the calculation of membership function values, germplasms with superior comprehensive characteristics were selected, including N. ‘Purple Joy’, N. ‘Key Largo’, and N. ‘Eldorado’. A total of 115 alleles were amplified using 16 pairs of SSR markers from the tested materials. The effective allele number (Ne) ranged from 2.01 to 8.02, Shannon’s information index (I) varied from 1.03 to 2.25, polymorphism information content (PIC) ranged from 0.57 to 0.90, and the genetic similarity coefficient was from 0.30 to 0.80. Based on the morphological traits and SSR molecular markers, the tested water lily germplasms were classified into four and five categories, respectively, showing certain similarities and differences. The morphological clustering effectively distinguished between viviparous and non-viviparous water lilies, while the SSR-based clustering did not show a significant correlation with viviparity. Principal component analysis indicated that different groups were relatively independent, while individuals within each group were concentrated. These results suggest that combining morphological traits and SSR analysis is an effective approach for evaluating the genetic diversity of water lilies and understanding the genetic relationships among germplasms and provide a valuable reference for utilizing viviparous germplasms and breeding new varieties. Full article
(This article belongs to the Section Plant Genetics, Genomics and Biotechnology)
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20 pages, 480 KiB  
Article
An Optimal Beneficiary Profile to Ensure Focused Interventions for Older Adults
by Dorina-Claudia Bălan, Rozeta Drăghici, Ioana Găiculescu, Alexandra Rusu, Andrada-Elena Stan and Polixenia Stan
Geriatrics 2025, 10(2), 59; https://doi.org/10.3390/geriatrics10020059 - 14 Apr 2025
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Abstract
Background: Aging is a lifelong process, and many chronic diseases and geriatric syndromes are influenced by lifestyle factors. For active aging and maintaining functional capacity facilitate health, there are essential aspects in geriatric care. Our objective was to create a specific profile focusing [...] Read more.
Background: Aging is a lifelong process, and many chronic diseases and geriatric syndromes are influenced by lifestyle factors. For active aging and maintaining functional capacity facilitate health, there are essential aspects in geriatric care. Our objective was to create a specific profile focusing on the characteristics of a possible optimal beneficiary of a newly developed program that is meant to increase the social inclusion and participation in social life of older adults. Methods: The profile was built based on a mixed design, a quantitative and qualitative analysis that identified the typology of an optimal beneficiary of a newly developed yoga program. The quantitative analysis (50 subjects from NIGG “Ana Aslan” Bucharest) identified the main predictors impacting subjects’ willingness to participate in a yoga program based on their pathologies at a mental and/or physical level. The main materials used for this were the Clinical Assessment Scales for the Elderly (CASE-SF) and the Quality-of-Life Assessment Questionnaire (WHOQOL-BREF). The qualitative analysis consisted of four focus groups (10 subjects from NIGG “Ana Aslan” and 7 subjects from GNSPY), aiming to provide the in-depth reasons for participating in a yoga program. Results: The results showed that a diagnosed physical impairment was correlated with an increased willingness to participate in yoga classes, while a mental pathology was associated with a decreased willingness to participate in such a program. Five main themes emerged from the qualitative analysis. Conclusions: The profile provides answers related to the specifics of the beneficiary based on their motivation, limits, and personality traits. Full article
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