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116 Results Found

  • Article
  • Open Access
4 Citations
10,053 Views
22 Pages

A Proposed Methodology to Analyze Plant Growth and Movement from Phenomics Data

  • María Victoria Díaz-Galián,
  • Fernando Perez-Sanz,
  • Jose David Sanchez-Pagán,
  • Julia Weiss,
  • Marcos Egea-Cortines and
  • Pedro J. Navarro

29 November 2019

Image analysis of developmental processes in plants reveals both growth and organ movement. This study proposes a methodology to study growth and movement. It includes the standard acquisition of internal and external reference points and coordinates...

  • Editorial
  • Open Access
5 Citations
6,194 Views
6 Pages

Transdisciplinary Graduate Training in Predictive Plant Phenomics

  • Carolyn J. Lawrence-Dill,
  • Theodore J. Heindel,
  • Patrick S. Schnable,
  • Stephanie J. Strong,
  • Jill Wittrock,
  • Mary E. Losch and
  • Julie A. Dickerson

Novel methods to increase crop productivity are required to meet anticipated demands for food, feed, fiber, and fuel. It is becoming feasible to use modern sensors and data analysis techniques for predicting plant growth and productivity based on gen...

  • Review
  • Open Access
68 Citations
9,844 Views
25 Pages

Using Plant Phenomics to Exploit the Gains of Genomics

  • Aditya Pratap,
  • Sanjeev Gupta,
  • Ramakrishnan Madhavan Nair,
  • S. K. Gupta,
  • Roland Schafleitner,
  • P. S. Basu,
  • Chandra Mohan Singh,
  • Umashanker Prajapati,
  • Ajeet Kumar Gupta and
  • Kwang-Hyun Baek
  • + 2 authors

Agricultural scientists face the dual challenge of breeding input-responsive, widely adoptable and climate-resilient varieties of crop plants and developing such varieties at a faster pace. Integrating the gains of genomics with modern-day phenomics...

  • Article
  • Open Access
4 Citations
2,846 Views
16 Pages

Meta-Analysis Reveals Challenges and Gaps for Genome-to-Phenome Research Underpinning Plant Drought Response

  • Anthony E. Melton,
  • Stephanie J. Galla,
  • Carlos Dave C. Dumaguit,
  • John M. A. Wojahn,
  • Stephen Novak,
  • Marcelo Serpe,
  • Peggy Martinez and
  • Sven Buerki

14 October 2022

Severe drought conditions and extreme weather events are increasing worldwide with climate change, threatening the persistence of native plant communities and ecosystems. Many studies have investigated the genomic basis of plant responses to drought....

  • Article
  • Open Access
7 Citations
3,291 Views
18 Pages

A New Method for Extracting Individual Plant Bio-Characteristics from High-Resolution Digital Images

  • Saba Rabab,
  • Edmond Breen,
  • Alem Gebremedhin,
  • Fan Shi,
  • Pieter Badenhorst,
  • Yi-Ping Phoebe Chen and
  • Hans D. Daetwyler

23 March 2021

The extraction of automated plant phenomics from digital images has advanced in recent years. However, the accuracy of extracted phenomics, especially for individual plants in a field environment, requires improvement. In this paper, a new and effici...

  • Article
  • Open Access
22 Citations
4,828 Views
19 Pages

A Phenomics and Metabolomics Investigation on the Modulation of Drought Stress by a Biostimulant Plant Extract in Tomato (Solanum lycopersicum)

  • Cristina Sudiro,
  • Federico Guglielmi,
  • Marie Hochart,
  • Biancamaria Senizza,
  • Leilei Zhang,
  • Luigi Lucini and
  • Adriano Altissimo

22 March 2022

Biostimulants are gaining increasing interest because of their ability to provide a green and effective strategy towards sustainable crop production. Nonetheless, their mode of action remains often unknown. The object of this work was to unravel the...

  • Review
  • Open Access
8 Citations
4,457 Views
17 Pages

Harnessing state-of-the-art technologies to improve disease resistance is a critical objective in modern plant breeding. Artificial intelligence (AI), particularly deep learning and big model (large language model and large multi-modal model), has em...

  • Communication
  • Open Access
6 Citations
2,021 Views
8 Pages

31 January 2023

Ever since research attention was first paid to phenomics, it has mainly focused on the use of high throughput phenotyping for characterizing traits in an accurate and fast manner. It was recently realized that its use has huge potential in precision...

  • Review
  • Open Access
69 Citations
9,623 Views
19 Pages

Review: Application of Artificial Intelligence in Phenomics

  • Shona Nabwire,
  • Hyun-Kwon Suh,
  • Moon S. Kim,
  • Insuck Baek and
  • Byoung-Kwan Cho

25 June 2021

Plant phenomics has been rapidly advancing over the past few years. This advancement is attributed to the increased innovation and availability of new technologies which can enable the high-throughput phenotyping of complex plant traits. The applicat...

  • Review
  • Open Access
96 Citations
16,676 Views
28 Pages

2 February 2021

Measurement of plant characteristics is still the primary bottleneck in both plant breeding and crop management. Rapid and accurate acquisition of information about large plant populations is critical for monitoring plant health and dissecting the un...

  • Feature Paper
  • Review
  • Open Access
44 Citations
7,957 Views
60 Pages

14 September 2021

In this paper, we review gene bank operations that have an influence on the global conservation system, with the intention to identify critical aspects that should be improved for optimum performance. We describe the role of active and base collectio...

  • Review
  • Open Access
30 Citations
6,903 Views
14 Pages

Integrating Genomic and Phenomic Approaches to Support Plant Genetic Resources Conservation and Use

  • Gayle M. Volk,
  • Patrick F. Byrne,
  • Clarice J. Coyne,
  • Sherry Flint-Garcia,
  • Patrick A. Reeves and
  • Chris Richards

22 October 2021

Plant genebanks provide genetic resources for breeding and research programs worldwide. These programs benefit from having access to high-quality, standardized phenotypic and genotypic data. Technological advances have made it possible to collect phe...

  • Article
  • Open Access
6 Citations
3,974 Views
25 Pages

Leaf Count Aided Novel Framework for Rice (Oryza sativa L.) Genotypes Discrimination in Phenomics: Leveraging Computer Vision and Deep Learning Applications

  • Mukesh Kumar Vishal,
  • Rohit Saluja,
  • Devarshi Aggrawal,
  • Biplab Banerjee,
  • Dhandapani Raju,
  • Sudhir Kumar,
  • Viswanathan Chinnusamy,
  • Rabi Narayan Sahoo and
  • Jagarlapudi Adinarayana

10 October 2022

Drought is a detrimental factor to gaining higher yields in rice (Oryza sativa L.), especially amid the rising occurrence of drought across the globe. To combat this situation, it is essential to develop novel drought-resilient varieties. Therefore,...

  • Article
  • Open Access
45 Citations
6,935 Views
20 Pages

UAV-Based LiDAR for High-Throughput Determination of Plant Height and Above-Ground Biomass of the Bioenergy Grass Arundo donax

  • Mauro Maesano,
  • Sacha Khoury,
  • Farid Nakhle,
  • Andrea Firrincieli,
  • Alan Gay,
  • Flavia Tauro and
  • Antoine Harfouche

21 October 2020

Replacing fossil fuels with cellulosic biofuels is a valuable component of reducing the drivers of climate change. This leads to a requirement to develop more productive bioenergy crops, such as Arundo donax with the aim of increasing above-ground bi...

  • Article
  • Open Access
1 Citations
1,972 Views
30 Pages

Seed-associated microbiomes represent an underexplored frontier in synthetic community (SynCom) design, particularly in forage legumes such as lucerne (Medicago sativa L.), where early microbial assembly can shape plant development. Crop wild relativ...

  • Editorial
  • Open Access
9 Citations
3,314 Views
12 Pages

1 March 2024

Genetic resources serve as the foundation of our food supply and are building blocks for the development of new crop varieties that support sustainable crop production in the face of climate change, as well as for the delivery of healthy diets to a c...

  • Review
  • Open Access
3 Citations
3,509 Views
17 Pages

18 June 2025

Biological research and agriculture are increasingly benefiting from the use of artificial intelligence algorithms, which are becoming integral to various areas of human activity. Fundamental knowledge of the mechanisms of plant germination, growth/d...

  • Article
  • Open Access
168 Citations
14,516 Views
15 Pages

31 May 2017

Precision phenotyping, especially the use of image analysis, allows researchers to gain information on plant properties and plant health. Aerial image detection with unmanned aerial vehicles (UAVs) provides new opportunities in precision farming and...

  • Article
  • Open Access
26 Citations
3,891 Views
13 Pages

High-Throughput Phenotyping Approach for the Evaluation of Heat Stress in Korean Ginseng (Panax ginseng Meyer) Using a Hyperspectral Reflectance Image

  • Eunsoo Park,
  • Yun-Soo Kim,
  • Mohammad Kamran Omari,
  • Hyun-Kwon Suh,
  • Mohammad Akbar Faqeerzada,
  • Moon S. Kim,
  • Insuck Baek and
  • Byoung-Kwan Cho

21 August 2021

Panax ginseng has been used as a traditional medicine to strengthen human health for centuries. Over the last decade, significant agronomical progress has been made in the development of elite ginseng cultivars, increasing their production and qualit...

  • Review
  • Open Access
146 Citations
23,313 Views
33 Pages

Understanding Forest Health with Remote Sensing-Part II—A Review of Approaches and Data Models

  • Angela Lausch,
  • Stefan Erasmi,
  • Douglas J. King,
  • Paul Magdon and
  • Marco Heurich

5 February 2017

Stress in forest ecosystems (FES) occurs as a result of land-use intensification, disturbances, resource limitations or unsustainable management, causing changes in forest health (FH) at various scales from the local to the global scale. Reactions to...

  • Review
  • Open Access
20 Citations
6,835 Views
35 Pages

Plant Physiological Analysis to Overcome Limitations to Plant Phenotyping

  • Matthew Haworth,
  • Giovanni Marino,
  • Giulia Atzori,
  • Andre Fabbri,
  • Andre Daccache,
  • Dilek Killi,
  • Andrea Carli,
  • Vincenzo Montesano,
  • Adriano Conte and
  • Mauro Centritto
  • + 1 author

29 November 2023

Plant physiological status is the interaction between the plant genome and the prevailing growth conditions. Accurate characterization of plant physiology is, therefore, fundamental to effective plant phenotyping studies; particularly those focused o...

  • Perspective
  • Open Access
1 Citations
1,480 Views
25 Pages

The Emerging Role of Omics-Based Approaches in Plant Virology

  • Viktoriya Samarskaya,
  • Nadezhda Spechenkova,
  • Natalia O. Kalinina,
  • Andrew J. Love and
  • Michael Taliansky

15 July 2025

Virus infections in plants are a major threat to crop production and sustainable agriculture, which results in significant yield losses globally. The past decade has seen the development and deployment of sophisticated high-throughput omics technolog...

  • Article
  • Open Access
29 Citations
11,619 Views
15 Pages

Novel Low Cost 3D Surface Model Reconstruction System for Plant Phenotyping

  • Suxing Liu,
  • Lucia M. Acosta-Gamboa,
  • Xiuzhen Huang and
  • Argelia Lorence

18 September 2017

Accurate high-resolution three-dimensional (3D) models are essential for a non-invasive analysis of phenotypic characteristics of plants. Previous limitations in 3D computer vision algorithms have led to a reliance on volumetric methods or expensive...

  • Review
  • Open Access
99 Citations
14,408 Views
24 Pages

Increasing the ability to investigate plant functions and structure through non-invasive methods with high accuracy has become a major target in plant breeding and precision agriculture. Emerging approaches in plant phenotyping play a key role in unr...

  • Article
  • Open Access
30 Citations
6,523 Views
14 Pages

5 November 2016

In the early stages of plant breeding, breeders evaluate a large number of varieties. Due to limited availability of seeds and space, plot sizes may range from one to four rows. Spectral proximal sensors can be used in place of labour-intensive metho...

  • Review
  • Open Access
568 Views
41 Pages

4 January 2026

Peanut (Arachis hypogaea L.) is a globally important oilseed and food legume, yet its productivity is persistently constrained by devastating diseases and insect pests that thrive under changing climates. This review aims to provide a comprehensive s...

  • Article
  • Open Access
8 Citations
3,137 Views
15 Pages

2 June 2022

Morphological characterization of olive (Olea europaea L.) varieties to detect desirable traits has been based on the training of expert panels and implementation of laborious multiyear measurements with limitations in accuracy and throughput of meas...

  • Article
  • Open Access
6 Citations
2,918 Views
19 Pages

Relieving the Phenotyping Bottleneck for Grape Bunch Architecture in Grapevine Breeding Research: Implementation of a 3D-Based Phenotyping Approach for Quantitative Trait Locus Mapping

  • Florian Rist,
  • Florian Schwander,
  • Robert Richter,
  • Jennifer Mack,
  • Anna Schwandner,
  • Ludger Hausmann,
  • Volker Steinhage,
  • Reinhard Töpfer and
  • Katja Herzog

In viticulture, winemakers and the industry demand grape bunches that have a reduced degree of bunch compactness. The major aspect is that a loose bunch compactness reduces the risk of severe Botrytis bunch-rot infections. Grapevine breeders focus he...

  • Article
  • Open Access
26 Citations
9,994 Views
16 Pages

Morphological Characterization of Root System Architecture in Diverse Tomato Genotypes during Early Growth

  • Aurora Alaguero-Cordovilla,
  • Francisco Javier Gran-Gómez,
  • Sergio Tormos-Moltó and
  • José Manuel Pérez-Pérez

5 December 2018

Plant roots exploit morphological plasticity to adapt and respond to different soil environments. We characterized the root system architecture of nine wild tomato species and four cultivated tomato (Solanum lycopersicum L.) varieties during early gr...

  • Article
  • Open Access
33 Citations
7,656 Views
15 Pages

16 November 2019

Row crops represent the most important crops in terms of global cultivated area. Such crops include soybean, corn, wheat, rice, rapeseed, sunflower, and cotton. Row crops agriculture is generally an intensive system of farming used to obtain high yie...

  • Article
  • Open Access
5 Citations
3,826 Views
8 Pages

New Parameters for Seedling Vigor Developed via Phenomics

  • Song Lim Kim,
  • Yong Suk Chung,
  • Hyeonso Ji,
  • Hongseok Lee,
  • Inchan Choi,
  • Nyunhee Kim,
  • Eungyeong Lee,
  • Jun Oh,
  • Do-Yu Kang and
  • Kyung-Hwan Kim
  • + 3 authors

27 April 2019

Early seedling establishment in rice (Oryza sativa L.), which is measured by primary/secondary tiller, shoot length, biomass, root-related traits, and leaf area index, is an important trait because it helps to compete for light, air, and water for be...

  • Article
  • Open Access
20 Citations
4,889 Views
16 Pages

A Hyperspectral-Physiological Phenomics System: Measuring Diurnal Transpiration Rates and Diurnal Reflectance

  • Shahar Weksler,
  • Offer Rozenstein,
  • Nadav Haish,
  • Menachem Moshelion,
  • Rony Walach and
  • Eyal Ben-Dor

8 May 2020

A novel hyperspectral-physiological system that monitors plants dynamic response to abiotic alterations was developed. The system is a sensor-to-plant platform which can determine the optimal time of day during which physiological traits can be succe...

  • Article
  • Open Access
31 Citations
5,835 Views
17 Pages

Image-Based Phenotyping of Flowering Intensity in Cool-Season Crops

  • Chongyuan Zhang,
  • Wilson A. Craine,
  • Rebecca J. McGee,
  • George J. Vandemark,
  • James B. Davis,
  • Jack Brown,
  • Scot H. Hulbert and
  • Sindhuja Sankaran

6 March 2020

The timing and duration of flowering are key agronomic traits that are often associated with the ability of a variety to escape abiotic stress such as heat and drought. Flowering information is valuable in both plant breeding and agricultural product...

  • Letter
  • Open Access
34 Citations
5,159 Views
10 Pages

9 February 2020

Enhancing plant breeding to ensure global food security requires new technologies. For wheat phenotyping, only limited seeds and resources are available in early selection cycles. This forces breeders to use small plots with single or multiple row pl...

  • Review
  • Open Access
37 Citations
5,668 Views
13 Pages

High-Throughput Phenotyping Methods for Breeding Drought-Tolerant Crops

  • Minsu Kim,
  • Chaewon Lee,
  • Subin Hong,
  • Song Lim Kim,
  • Jeong-Ho Baek and
  • Kyung-Hwan Kim

Drought is a main factor limiting crop yields. Modern agricultural technologies such as irrigation systems, ground mulching, and rainwater storage can prevent drought, but these are only temporary solutions. Understanding the physiological, biochemic...

  • Article
  • Open Access
32 Citations
5,603 Views
18 Pages

Corn Nitrogen Status Diagnosis with an Innovative Multi-Parameter Crop Circle Phenom Sensing System

  • Cadan Cummings,
  • Yuxin Miao,
  • Gabriel Dias Paiao,
  • Shujiang Kang and
  • Fabián G. Fernández

24 January 2021

Accurate and non-destructive in-season crop nitrogen (N) status diagnosis is important for the success of precision N management (PNM). Several active canopy sensors (ACS) with two or three spectral wavebands have been used for this purpose. The Crop...

  • Perspective
  • Open Access
17 Citations
5,384 Views
12 Pages

4 March 2023

Seeds play a critical role in ensuring food security for the earth’s 8 billion people. There is great biodiversity in plant seed content traits worldwide. Consequently, the development of robust, rapid, and high-throughput methods is required f...

  • Article
  • Open Access
1 Citations
1,227 Views
18 Pages

15 September 2025

In recent years, phenotyping approaches in plant breeding have expanded in both methodology and data collection capacity. One such tool, Near-Infrared Spectroscopy (NIRS) generates a wealth of reflectance values for biological samples. To test the po...

  • Article
  • Open Access
17 Citations
7,000 Views
25 Pages

Physcomitrium patens Infection by Colletotrichum gloeosporioides: Understanding the Fungal–Bryophyte Interaction by Microscopy, Phenomics and RNA Sequencing

  • Adriana Otero-Blanca,
  • Yordanis Pérez-Llano,
  • Guillermo Reboledo-Blanco,
  • Verónica Lira-Ruan,
  • Daniel Padilla-Chacon,
  • Jorge Luis Folch-Mallol,
  • María del Rayo Sánchez-Carbente,
  • Inés Ponce De León and
  • Ramón Alberto Batista-García

22 August 2021

Anthracnose caused by the hemibiotroph fungus Colletotrichum gloeosporioides is a devastating plant disease with an extensive impact on plant productivity. The process of colonization and disease progression of C. gloeosporioides has been studied in...

  • Article
  • Open Access
2 Citations
2,106 Views
18 Pages

Use of Phenomics in the Selection of UAV-Based Vegetation Indices and Prediction of Agronomic Traits in Soybean Subjected to Flooding

  • Charleston dos Santos Lima,
  • Darci Francisco Uhry Junior,
  • Ivan Ricardo Carvalho and
  • Christian Bredemeier

10 September 2024

Flooding is a frequent environmental stress that reduces soybean growth and grain yield in many producing areas in the world, such as the United States, Southeast Asia, and Southern Brazil. In these regions, soybean is frequently cultivated in lowlan...

  • Article
  • Open Access
31 Citations
6,258 Views
17 Pages

19 November 2018

In the past years, the diversity of Capsicum has been mainly investigated through genetics and genomics approaches, fewer efforts have been made in the field of plant phenomics. Assessment of crop traits with high-throughput methodologies could enhan...

  • Article
  • Open Access
40 Citations
9,246 Views
16 Pages

Machine Learning and Computer Vision System for Phenotype Data Acquisition and Analysis in Plants

  • Pedro J. Navarro,
  • Fernando Pérez,
  • Julia Weiss and
  • Marcos Egea-Cortines

5 May 2016

Phenomics is a technology-driven approach with promising future to obtain unbiased data of biological systems. Image acquisition is relatively simple. However data handling and analysis are not as developed compared to the sampling capacities. We pre...

  • Article
  • Open Access
18 Citations
4,865 Views
22 Pages

Imaging Sensor-Based High-Throughput Measurement of Biomass Using Machine Learning Models in Rice

  • Allimuthu Elangovan,
  • Nguyen Trung Duc,
  • Dhandapani Raju,
  • Sudhir Kumar,
  • Biswabiplab Singh,
  • Chandrapal Vishwakarma,
  • Subbaiyan Gopala Krishnan,
  • Ranjith Kumar Ellur,
  • Monika Dalal and
  • Viswanathan Chinnusamy
  • + 6 authors

Phenomics technologies have advanced rapidly in the recent past for precision phenotyping of diverse crop plants. High-throughput phenotyping using imaging sensors has been proven to fetch more informative data from a large population of genotypes th...

  • Article
  • Open Access
12 Citations
3,635 Views
18 Pages

Application of Phenomics to Elucidate the Influence of Rootstocks on Drought Response of Tomato

  • Pratapsingh S. Khapte,
  • Pradeep Kumar,
  • Goraksha C. Wakchaure,
  • Krishna Kumar Jangid,
  • Giuseppe Colla,
  • Mariateresa Cardarelli and
  • Jagadish Rane

26 June 2022

The cultivation of nutritionally and economically important crops like tomato are often threatened by dry spells due to drought as these crops largely depend on an assured water supply. The magnitude and intensity of drought is predicted to intensify...

  • Article
  • Open Access
2 Citations
2,537 Views
16 Pages

A Microimage-Processing-Based Technique for Detecting Qualitative and Quantitative Characteristics of Plant Cells

  • Jun Feng,
  • Zhenting Li,
  • Shizhen Zhang,
  • Chun Bao,
  • Jingxian Fang,
  • Yun Yin,
  • Bolei Chen,
  • Lei Pan,
  • Bing Wang and
  • Yu Zheng

15 September 2023

When plants encounter external environmental stimuli, they can adapt to environmental changes through a complex network of metabolism–gene expression–metabolism within the plant cell. In this process, changes in the characteristics of pla...

  • Article
  • Open Access
23 Citations
7,052 Views
15 Pages

Phenomics is a new area that offers numerous opportunities for its applicability in plant breeding. One possibility is to exploit this type of information obtained from early stages of the growing season by combining it with genomic data. This opens...

  • Article
  • Open Access
14 Citations
5,637 Views
22 Pages

15 October 2021

Beyond the use of 2D images, the analysis of 3D images is also necessary for analyzing the phenomics of crop plants. In this study, we configured a system and implemented an algorithm for the 3D image reconstruction of red pepper plant (Capsicum annu...

  • Technical Note
  • Open Access
74 Citations
19,357 Views
17 Pages

Predicting Plant Growth from Time-Series Data Using Deep Learning

  • Robail Yasrab,
  • Jincheng Zhang,
  • Polina Smyth and
  • Michael P. Pound

20 January 2021

Phenotyping involves the quantitative assessment of the anatomical, biochemical, and physiological plant traits. Natural plant growth cycles can be extremely slow, hindering the experimental processes of phenotyping. Deep learning offers a great deal...

  • Article
  • Open Access
15 Citations
5,471 Views
15 Pages

The Snapdragon LATE ELONGATED HYPOCOTYL Plays A Dual Role in Activating Floral Growth and Scent Emission

  • Marta I. Terry,
  • Fernando Pérez-Sanz,
  • Pedro J. Navarro,
  • Julia Weiss and
  • Marcos Egea-Cortines

17 August 2019

The plant circadian clock controls a large number of internal processes, including growth and metabolism. Scent emission displays a circadian pattern in many species such as the snapdragon. Here we show that knocking down LATE ELONGATED HYPOCOTYL in...

  • Editorial
  • Open Access
12 Citations
4,960 Views
7 Pages

21 October 2019

In the post-genomics era, integrative omics studies for biochemical, physiological, and molecular changes of plants in response to stress conditions play more crucial roles. Among them, atlas analysis of plants under different abiotic stresses, inclu...

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