Search Results (123)

Soil microbial communities are crucial for ecosystem services, soil fertility, and the resilience of agroecosystems. This study investigated how long-term (31 years) agronomic practices—tillage, NPK fertilization, and cropping system—along with measured environmental variables influence the microbial biomass and its community composition in Chernozem soil under corn cultivation. The polyfactorial field experiment included three tillage treatments ((moldboard (MT), ripped (RT), strip (ST)), two fertilization regimes (NPK (N: 160; P: 26; K: 74 kg/ha), and unfertilized control) and two cropping systems (corn monoculture and corn–wheat biculture). The soil samples (0–30 cm) were collected in June and September 2023. Microbial biomass and community structure were quantified using phospholipid fatty acid (PLFA) analysis, which allowed the estimation of total microbial biomass and community composition (arbuscular mycorrhizal (AM) fungi, fungi, Gram-negative (GN) and Gram-positive (GP) bacteria, actinomycetes). Our results showed that microbial biomass increased from June to September, rising by 270% in unfertilized plots and by 135% in NPK-fertilized plots, due to higher soil moisture. Reduced tillage, especially ST, promoted significantly higher microbial biomass, with biomass reaching 290% and 182% of that in MT plots in June and September, respectively. MT had a higher ratio of bacteria-to-fungi compared to RT and ST, indicating a greater sensitivity of fungi to disturbance. NPK fertilization lowered soil pH by about one unit (to 4.1–4.8) and reduced microbial biomass—by 2% in June and 48% in September—compared to the control, with the particular suppression of AM fungi. The cropping system had a smaller overall effect on microbial biomass. Full article

Urban expansion fragments once-contiguous forest patches, generating pronounced edge gradients that modulate soil physicochemical properties and biodiversity. We quantified how fragmentation reshaped the soil microbiome continuum and its implications for soil carbon storage in a temperate urban mixed deciduous forest. A total of 18 plots were considered in this study, with six plots for each fragment type. Intact interior forest (F), internal forest path fragment (IF), and external forest path fragment (EF) soils were sampled at 0–15, 15–30, and 30–45 cm depths and profiled through phospholipid-derived fatty acid (PLFA) chemotyping and amino sugar proxies for living microbiome and microbial-derived necromass assessment, respectively. Carbon fractionation was performed through the chemical oxidation method. Diversity indices (Shannon–Wiener, Pielou evenness, Margalef richness, and Simpson dominance) were calculated based on the determined fatty acids derived from the phospholipid fraction. The microbial biomass ranged from 85.1 to 214.6 nmol g⁻¹ dry soil, with the surface layers of F exhibiting the highest values (p < 0.01). Shannon diversity declined systematically from F > IF > EF. The microbial necromass varied from 11.3 to 23.2 g⋅kg⁻¹. Fragmentation intensified the stratification of carbon pools, with organic carbon decreasing by approximately 14% from F to EF. Our results show that EFs possess a declining microbiome continuum that weakens their carbon sequestration capacity in urban forests. Full article

Greenhouses have positively impacted plant production by allowing the cultivation of different crops per year. However, the accumulation of agricultural plastics, potentially contaminated with agrochemicals, raises environmental concerns. This work evaluates the combined effect of Bordeaux mixture and low-density polyethylene (LDPE) microplastics (<5 mm) on the growth of lettuce (Lactuca sativa L.) and soil microbial communities. Different levels of Bordeaux mixture (0, 100 and 500 mg kg⁻¹), equivalent to Cu(II) concentrations (0, 17 and 83 mg kg⁻¹), LDPE microplastics (0, 1% and 5%) and their combination were selected. After 28 days of growth, biometric and photosynthetic parameters, Cu uptake, and soil microbial responses were evaluated. Plant germination and growth were not significantly affected by the combination of Cu and plastics. However, individual Cu treatments influenced root and shoot length and biomass. Chlorophyll and carotenoid concentrations increased with Cu addition, although the differences were not statistically significant. Phospholipid fatty acid (PLFA) analysis revealed a reduction in microbial biomass at the highest Cu dose, whereas LDPE alone showed limited effects and may reduce Cu bioavailability. These results suggest that even at the highest concentration added, Cu can act as a plant nutrient, while the combination of Cu–plastics showed varying effects on plant growth and soil microbial communities. Full article

The Qinghai–Tibet Plateau, a region susceptible to global change, stores substantial amounts of soil organic carbon (SOC) in its alpine grassland. However, little is known about how SOC is regulated by soil microbial communities, which vary with elevation, mean annual temperature (MAT), and mean annual precipitation (MAP). This study integrates phospholipid fatty acid (PLFA) analysis to simultaneously resolve microbial biomass, community composition, and membrane lipid adaptations along an elevational gradient (2861–5090 m) on the Qinghai–Tibet Plateau. This study found that microbial PLFAs increased significantly with rising MAP, while the relationship with MAT was nonlinear. PLFAs of different microbial groups all had a positive effect on SOC storage. At higher altitudes (characterized by lower MAP and lower MAT), Gram-positive bacteria dominated bacterial communities, and fungi dominated the overall microbial community, highlighting microbial structural adaptations as key regulators of carbon storage. Saturated fatty acids with branches of soil microbial membrane dominated across sites, but their prevalence over unsaturated fatty acids decreased at high elevations. These findings establish a mechanistic link between climate-driven microbial community restructuring and SOC vulnerability on the QTP, providing a predictive framework for carbon–climate feedbacks in alpine systems under global warming. Full article

The priming effect (PE), a microbially mediated process, critically regulates the balance between carbon sequestration and mineralization. This study used soils from different soil depths (0–20 cm, 20–40 cm, and 40–60 cm) under Picea schrenkiana forest in the Tianshan Mountains as the research object. An indoor incubation experiment was conducted by adding three concentrations (1% SOC, 2% SOC, and 3% SOC) of ¹³C-labelled glucose. We applied ¹³C isotope probe-phospholipid fatty acid (PLFA-SIP) technology to investigate the influence of readily labile organic carbon inputs on soil priming effect (PE), microbial community shifts at various depths, and the mechanisms underlying soil PE. The results indicated that the addition of ¹³C-labeled glucose accelerated the mineralization of soil organic carbon (SOC); CO₂ emissions were highest in the 0–20 cm soil layer and decreased trend with increasing soil depth, with significant differences observed across different soil layers (p < 0.05). Soil depth had a positive direct effect on the cumulative priming effect (CPE); however, it showed negative indirect effects through physico-chemical properties and microbial biomass. The CPE of the 0–20 cm soil layer was significantly positively correlated with ¹³C-Gram-positive bacteria, ¹³C-Gram-negative bacteria, and ¹³C-actinomycetes. The CPE of the 20–40 cm and 40–60 cm soil layers exhibited a significant positive correlation with cumulative mineralization (CM) and microbial biomass carbon (MBC). Glucose addition had the largest and most significant positive effect on the CPE. Glucose addition positively affected PLFAs and particularly microbial biomass. This study provides valuable insights into the dynamics of soil carbon pools at varying depths following glucose application, advancing the understanding of forest soil carbon sequestration. Full article

Soil microbes play a crucial role in driving biogeochemical cycles and are closely linked with aboveground plants during forest succession. Moso bamboo (Phyllostachys edulis) encroachment into adjacent forests of varying composition is known to alter plant diversity in subtropical and tropical regions. However, how soil microbial communities respond to this vegetation type transformation has not fully explored. To address this knowledge gap, a time-alternative spatial method was employed in the present study, and we investigated the effect of Moso bamboo expansion into subtropical broad-leaved forest and coniferous forest on soil microbial phospholipid fatty acids (PLFAs). We also measured the dynamics of key soil properties during the Moso bamboo expansion processes. Our results showed that Moso bamboo encroachment into subtropical broad-leaved forest induced an elevation in soil bacterial PLFAs (24.78%) and total microbial PLFAs (22.70%), while decreasing the fungal-to-bacterial (F:B) ratio. This trend was attributed to declines in soil NO₃⁻-N (18.63%) and soil organic carbon (SOC) concentrations (28.83%). Conversely, expansion into coniferous forests promoted soil fungal PLFAs (40.41%) and F:B ratio, primarily driven by increases in soil pH (4.83%) and decreases in SOC (36.18%). These results provide mechanistic insights into how contrasting expansion trajectories of Moso bamboo restructure soil microbial communities and highlight the need to consider vegetation context-dependency when evaluating the ecological consequences of Moso bamboo expansion. Full article

Increased precipitation and nitrogen (N) deposition critically influence ecological processes and stability in desert ecosystems. Studying how the soil microbial community responds to these climatic changes will improve our understanding of the impacts of climate changes on arid environments. Therefore, we conducted a field experiment in the Gurbantunggut Desert, applying phospholipid fatty acid (PLFA) analysis to assess the responses of soil microbial community to climate change. We found that in years with normal precipitation, increased precipitation promoted soil bacterial growth, whereas in drought years, increased N deposition promoted soil bacterial growth more effectively. Although soil microbial diversity did not change significantly overall, it decreased with increasing N deposition. Random forest analysis and linear regression analysis indicated that soil pH and microbial biomass carbon (MBC) were the main drivers for the changes in soil microbial community. Structural equation modeling (SEM) further revealed that increased precipitation increased soil Gram-positive bacteria (G⁺) by raising soil MBC, while decreasing soil Actinomycetes (Act), fungi, and Dark Septate Endophyte (DSE). In contrast, increased N deposition affected soil microbial community by altering soil pH and MBC. Our results highlight the synergistic effects of increased precipitation and N deposition on soil microbial community structure. Further research should pay more attention to the effects of climate changes on soil microbial communities with long-term monitoring to confirm our findings across different ecosystems. Full article

The integration of manure and straw substantially affects soil organic carbon (SOC) dynamics, transformation, and long-term stabilization in agricultural systems. Dissolved organic carbon (DOC), particulate organic carbon (POC), and mineral-associated organic carbon (MOC) are the three main components of the SOC pool, each influencing soil carbon dynamics and nutrient cycling. Current research gaps remain regarding how combined fertilization practices affect the inputs of plant-originated and microbe-derived carbon into SOC pools and stability mechanisms. Our investigation measured SOC fractions (DOC, POC, MOC), SOC mineralization rate (SCMR), microbial necromass carbon, lignin phenols, enzyme activities, and microbial phospholipid fatty acids (PLFAs) over a long-term (17 years) field experiment with four treatments: mineral fertilization alone (CF), manure-mineral combination (CM), straw-mineral application (CS), and integrated manure-straw-mineral treatment (CMS). The CMS treatment exhibited notably elevated levels of POC (7.42 g kg⁻¹), MOC (10.7 g kg⁻¹), and DOC (0.108 g kg⁻¹), as well as a lower SCMR value (1.85%), compared with other fertilization treatments. Additionally, the CMS treatment stimulated the buildup of both bacterial and fungal necromass while enhancing the concentrations of ligneous biomarkers (vanillin, syringyl, and cinnamic derivatives), which correlated strongly with the elevated contents of fungal and bacterial PLFAs and heightened activity of carbon-processing enzymes (α-glucosidase, polyphenol oxidase, cellobiohydrolase, peroxidase, N-acetyl-β-D-glucosidase). Furthermore, fungal and bacterial microbial necromass carbon, together with lignin phenols, significantly contributed to shaping the composition of SOC. Through random forest analysis, we identified that the contents of bacterial and fungal necromass carbon were the key factors influencing DOC and MOC. The concentrations of syringyl phenol and cinnamyl phenols, and the syringyl-to-cinnamyl phenols ratio were the primary determinants for POC, while the fungal-to-bacterial necromass carbon ratio, as well as the concentrations of vanillyl, syringyl, and cinnamyl phenols, played a critical role in SCMR. In conclusion, the manure combined with straw incorporation not only promoted microbial growth and enzyme activity but also enhanced plant- and microbial-derived carbon inputs. Consequently, this led to an increase in the contents and stability of SOC fractions (DOC, POC, and MOC). These results suggest that manure combined with straw is a viable strategy for soil fertility due to its improvement in SOC sequestration and stability. Full article

Forest fires critically disrupt soil ecosystems by altering physicochemical properties and microbial structure-function dynamics. This study assessed short-term impacts of fire intensities (light/moderate/heavy) on microbial communities in Larix gmelinii forests one year post-fire. Using phospholipid fatty acid (PLFA) and Biolog EcoPlate analyses, we found the following: (1) fire reduced soil organic carbon (SOC), dissolved organic carbon (DOC), total nitrogen (TN), and available nitrogen/potassium (AN/AK) via pyrolytic carbon release, while heavy-intensity fires enriched available phosphorus (AP), AN, and AK through ash deposition. (2) Thermal mortality and nutrient-pH-moisture stress persistently suppressed microbial biomass and metabolic activity. Moderate fires increased taxonomic richness but reduced functional diversity, confirming “functional redundancy.” (3) Neither soil microbial biomass nor metabolic activity at the fire site reached pre-fire levels after one year of recovery. Our findings advance post-fire soil restoration frameworks and advocate multi-omics integration to decode fire-adapted functional gene networks, guiding climate-resilient forest management. Full article

The high-input production mode of rice monoculture (RM) has caused severe soil degradation and biodiversity loss, necessitating a transition toward more sustainable practices. The traditional rice-fish co-culture (RF) may provide valuable insights for this situation. However, it remains elusive how long-term RF system influences soil microbial community structure, enzyme activities, and carbon (C) sequestration. Here, a study was conducted at two representative RF areas in Lianshan Zhuang and Yao Autonomous County. At Shatian (P1), three treatments included rice monoculture (RM1) and 2-year and 5-year RF (RF2, RF5). At Gaoliao (P2), the experimental treatments included rice monoculture (RM2) and 15 and 30 years of RF (RF15, RF30). We collected the surface layer (0–20 cm) soils. Then, we analyzed the chemical properties, phospholipid fatty acids (PLFA), and enzyme activities to investigate the effects of their variation on soil C sequestration. The results showed that RF treatments significantly increased soil organic C (SOC) content. Specifically, RF2 and RF5 treatments promoted the SOC content by 4.82% and 13.60% compared with RM1 treatment at P1, respectively; RF15 and RF30 treatments increased the SOC content by 23.41% and 31.93% compared with RM2 treatment at P2, respectively. Additionally, RF5 treatment significantly increased the biomass of the soil microbial community in comparison with RM1 treatment, as did RF15 treatment and RF30 treatment compared with RM2 treatment, including the contents of total PLFA and the PLFA of gram-positive bacteria (G+), gram-negative bacteria (G−), actinomycetes, fungi, and bacteria. Activities of β-glucosidase, cellobiohydrolase, β-1,4-N-acetylglucosaminidase, and urease significantly increased in RF5 and RF30 treatments. The piecewise SEM results indicated that the changes of total PLFA content and the PLFA content ratio of fungi to bacteria were related to contents of dissolved organic C (DOC) and total N (TN) under different RF durations, which are key indicators affecting SOC content. Overall, SOC storage increases with the RF durations, and soil microbial community structure may drive soil C sequestration under long-term RF, which provides a scientific significance and practical value in promoting the sustainability of agricultural ecosystems, enhancing the potential of soil as a carbon sink, and addressing global climate change. Full article

Rock dust (RD) is a by-product of the precious metal mining industry. Some mining operations produce close to 2,000,000 Mg of RD/year, posing disposal issues. This study evaluated the physicochemical and microbial properties of RD from gold mining and its potential use in RD-based growing media. Ten media formulations were tested: Promix (Control), 100% (RD), 100% topsoil (TS), 50% RD + 50% topsoil (RDT), 25% RD + 75% topsoil (RT), 50% RD + 50% Promix (RP), 50% RD + 25% biochar + 25% Promix (RBP), 50% RD + 25% compost + 25% Promix (RCP), 50% RD + 50% biochar (RB), and Huplaso (negative control). RD particle size ranged from 0.1 to 2 mm with a bulk density of 1.5 g cm⁻³, while RD-based media ranged from 0.8 to 1.1 g cm⁻³ showing increased porosity. Nutrient content was analyzed using Inductively Coupled Plasma Optical Emission Spectrometry (ICP-OES), and the active microbial community assessed using PLFA biomarkers via GC-MS/FID, n = 4 and p = 0.05. Microbial analysis identified five classes (protozoa, eukaryotes, Gram-positive (G+), Gram-negative (G−), and fungi (F)), with a significant increase in G−, G+, and F in RD-based amendment RBP (28%) compared to control P (9%). G+, G−, and F showed a strong negative correlation (r = −0.98) with pH, while calcium correlated positively (r = 0.85) with eukaryotes and a strong positive correlation (r = 0.95) of cation exchange capacity with G+. This study suggests blending RD with organic amendments improves physicochemical quality and microbial activity, supporting its use in crop production over disposal. Full article

Soil health is typically evaluated using physical, chemical, and biological parameters. However, identifying cost-effective and interpretable metrics remains a challenge. The effectiveness of ecological outcome verification (EOV) in predicting soil health in grazing lands was assessed at 22 ranches. Sixty-four soil samples were analyzed using the Haney soil health test (HSHT) and phospholipid fatty acid (PLFA). Of 104 variables, 13 were retained following principal component analysis (PCA), including variables associated with plant community, carbon dynamics, and microbial community structure. Soils with enriched microbial and organic matter (SOM) characteristics supported a healthier ecological status, as corroborated by greater EOV scores. Water-extractable organic carbon (WEOC) was positively correlated to plant functional groups, whereas SOM was positively correlated with plant biodiversity and functional groups. Total bacteria were positively correlated with all EOV parameters. Microbial biomass (MB) was positively correlated with both water and energy cycle indexes, whereas arbuscular mycorrhizal fungi (AMF) was positively correlated with the water cycle. From the multiple regression analyses, water infiltration emerged as a key predictor of soil respiration and WEOC. Overall, the ecological outcomes measured by EOV have the potential to serve as a proxy for soil health, providing a practical tool for producers to make informed land management decisions. Full article

Background/Objectives: This research aimed to investigate phospholipid fatty acid (PLFA) distribution in the brain, kidneys, and white adipose tissue (WAT) and lipid profiles in response to high-fat diets. Methods: Adult female C57BL/6 mice were fed high-fat diets containing 25% linseed, palm, or sunflower oil for 100 days. The fatty acid composition of dietary oils and tissue PL were analyzed using gas–liquid chromatography. Results: Linseed oil increased n-3 polyunsaturated fatty acids (PUFAs) with subsequent conversion into long-chain n-3 PUFAs in the brain and kidney PL, while only alpha-linolenic acid was elevated in WAT. Palm and sunflower oils resulted in unique PLFA distributions in the kidneys and WAT. Palm oil raised linoleic acid without conversion to pro-inflammatory n-6 PUFAs. Sunflower oil increased saturated palmitic acid, as opposed to the rise in monounsaturated oleic acid. Linseed oil also significantly improved lipid profiles, reducing LDL and increasing HDL levels while enhancing cardiovascular indices. Conclusions: This study demonstrates that dietary oils significantly impact organ-specific PLFA profiles, with linseed oil enriching brain and renal n-3 PUFAs, while palm and sunflower oils induce distinct modifications in the kidney and WAT. Moreover, linseed oil offers notable cardioprotective benefits due to the favorable lipid profile changes. These findings highlight the importance of dietary fat selection in achieving balanced lipid metabolism and suggest that diverse oil combinations may be essential for optimizing health outcomes. Full article

Soil microbes are crucial for regulating biogeochemical cycles and maintaining forest ecosystem sustainability; however, the understanding of microbial communities and enzyme activity under natural and plantation forests in plateau regions remains limited. Using soil samples from 15-, 30-, and 50-year-old Picea crassifolia plantations and a natural forest (NF) in eastern Qinghai, China, this study assessed physicochemical properties, microbial communities, and enzyme activity across three soil layers. Microbial composition was characterized using the phospholipid fatty acid (PLFA) method, which is sensitive to structural changes. The PLFAs of bacteria, fungi, and actinomycetes accounted for 58.31%–74.20%, 8.91%–16.83%, and 3.41%–10.41% of the total PLFAs in all forests, respectively. There were significant differences between the NF and plantations, with the NF exhibiting higher PLFA abundance and enzyme activities than plantations, except for fungal PLFAs. PLFAs in plantations increased with the plantation age. However, the fungi-to-bacteria ratio was lower in the NF than in plantations. Finally, a redundancy analysis revealed that soil properties influence microbial composition and enzyme functionality significantly. These findings highlight the influence of stand age on microbial communities and structure, offering valuable insights for forest management practices aimed at conserving natural forests. Full article

Diverse exogenous nitrogen (N) sources have a considerable impact on microbial community structure in terrestrial ecosystems. Legume plants and N deposition can relieve N limitations and increase net primary productivity. However, the differences in their effects on soil microbial communities remain unclear. Here, the responses of the soil microbial community to a legume-planting system and simulated N deposition were examined in karst grasslands in Southwest China over five years by analyzing soil microbial phospholipid fatty acids (PLFAs). The experiment included three treatments—legume plant introduction (N_L, Indigofera atropurpurea), N deposition (N_D, NH₄NO₃:10 g N m⁻² yr⁻¹), and a control with no treatment. The effects of N_L and N_D on soil microbial community composition differed significantly. N_D significantly reduced the biomass of bacteria, actinobacteria, and arbuscular mycorrhizal fungi. N_L insignificantly increased the biomass of all microbial groups. However, the total amounts of PLFAs and fungal biomass were significantly higher in N_L than in N_D. The effect of legume plant introduction on soil microbial community composition was more powerful than that of N_D. Overall, the introduction of legume plants is beneficial in terms of increasing the biomass of the soil microbial community and stabilizing the soil microbial community structure in karst grassland ecosystems. Full article