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Keywords = near-threatened species

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14 pages, 7789 KiB  
Article
Integrated Sampling Approaches Enhance Assessment of Saproxylic Beetle Biodiversity in a Mediterranean Forest Ecosystem (Sila National Park, Italy)
by Federica Mendicino, Francesco Carlomagno, Domenico Bonelli, Erica Di Biase, Federica Fumo and Teresa Bonacci
Insects 2025, 16(8), 812; https://doi.org/10.3390/insects16080812 - 6 Aug 2025
Abstract
Saproxylic beetles are key bioindicators of forest ecosystem quality and play essential roles in deadwood decomposition and nutrient cycling. However, their populations are increasingly threatened by habitat fragmentation, deadwood removal, and climate-driven environmental changes. For this reason, an integrated sampling method can increase [...] Read more.
Saproxylic beetles are key bioindicators of forest ecosystem quality and play essential roles in deadwood decomposition and nutrient cycling. However, their populations are increasingly threatened by habitat fragmentation, deadwood removal, and climate-driven environmental changes. For this reason, an integrated sampling method can increase the detection of species with varying ecological traits. We evaluated the effectiveness of integrative sampling methodologies to assess saproxylic beetle diversity within Sila National Park, a Mediterranean forest ecosystem of high conservation value, specifically in two beech forests and four pine forests. The sampling methods tested included Pan Traps (PaTs), Malaise Traps (MTs), Pitfall Traps (PTs), Bait Bottle Traps (BBTs), and Visual Census (VC). All specimens were identified to the species level whenever possible, using specialized dichotomous keys and preserved in the Entomological Collection TB, Unical. Various trap types captured a different number of species: the PaT collected 32 species, followed by the PT with 24, the MT with 16, the VC with 7, and the BBT with 5 species. Interestingly, biodiversity analyses conducted using PAST software version 4.17 revealed that PaTs and MTs recorded the highest biodiversity indices. The GLMM analysis, performed using SPSS software 29.0.1.0, demonstrated that various traps attracted different species with different abundances. By combining multiple trapping techniques, we documented a more comprehensive community composition compared to single-method approaches. Moreover, PaTs, MTs, and PTs recorded 20%, 40%, and 33% of the Near Threatened species, respectively. We report new records for Sila National Park, including the LC species Pteryngium crenulatum (Curculionidae) and the NT species Grynocharis oblonga (Trogossitidae). For the first time in Calabria, the LC species Triplax rufipes (Erotylidae) and the NT species Oxypleurus nodieri (Cerambycidae) and Glischrochilus quadrisignatus (Nitidulidae) were collected. Our results emphasize the importance of method diversity in capturing species with distinct ecological requirements and highlight the relevance of saproxylic beetles as indicators of forest health. These findings support the adoption of multi-method sampling protocols in forest biodiversity monitoring and management programs, especially in biodiversity-rich and structurally heterogeneous landscapes. Full article
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19 pages, 4059 KiB  
Article
Vulnerability Assessment of Six Endemic Tibetan-Himalayan Plants Under Climate Change and Human Activities
by Jin-Dong Wei and Wen-Ting Wang
Plants 2025, 14(15), 2424; https://doi.org/10.3390/plants14152424 - 5 Aug 2025
Abstract
The Tibetan-Himalayan region, recognized as a global biodiversity hotspot, is increasingly threatened by the dual pressures of climate change and human activities. Understanding the vulnerability of plant species to these forces is crucial for effective ecological conservation in this region. This study employed [...] Read more.
The Tibetan-Himalayan region, recognized as a global biodiversity hotspot, is increasingly threatened by the dual pressures of climate change and human activities. Understanding the vulnerability of plant species to these forces is crucial for effective ecological conservation in this region. This study employed an improved Climate Niche Factor Analysis (CNFA) framework to assess the vulnerability of six representative alpine endemic herbaceous plants in this ecologically sensitive region under future climate changes. Our results show distinct spatial vulnerability patterns for the six species, with higher vulnerability in the western regions of the Tibetan-Himalayan region and lower vulnerability in the eastern areas. Particularly under high-emission scenarios (SSP5-8.5), climate change is projected to substantially intensify threats to these plant species, reinforcing the imperative for targeted conservation strategies. Additionally, we found that the current coverage of protected areas (PAs) within the species’ habitats was severely insufficient, with less than 25% coverage overall, and it was even lower (<7%) in highly vulnerable regions. Human activity hotspots, such as the regions around Lhasa and Chengdu, further exacerbate species vulnerability. Notably, some species currently classified as least concern (e.g., Stipa purpurea (S. purpurea)) according to the IUCN Red List exhibit higher vulnerability than species listed as near threatened (e.g., Cyananthus microphyllus (C. microphylla)) under future climate change. These findings suggest that existing biodiversity assessments, such as the IUCN Red List, may not adequately account for future climate risks, highlighting the importance of incorporating climate change projections into conservation planning. Our study calls for expanding and optimizing PAs, improving management, and enhancing climate resilience to mitigate biodiversity loss in the face of climate change and human pressures. Full article
(This article belongs to the Section Plant Ecology)
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15 pages, 7392 KiB  
Article
Genetic Diversity and Population Structure of Tufted Deer (Elaphodus cephalophus) in Chongqing, China
by Fuli Wang, Chengzhong Yang, Yalin Xiong, Qian Xiang, Xiaojuan Cui and Jianjun Peng
Animals 2025, 15(15), 2254; https://doi.org/10.3390/ani15152254 - 31 Jul 2025
Viewed by 164
Abstract
The tufted deer (Elaphodus cephalophus), a Near-Threatened (NT) species endemic to China and Myanmar, requires robust genetic data for effective conservation. However, the genetic landscape of key populations, such as those in Chongqing, remains poorly understood. This study aimed to comprehensively [...] Read more.
The tufted deer (Elaphodus cephalophus), a Near-Threatened (NT) species endemic to China and Myanmar, requires robust genetic data for effective conservation. However, the genetic landscape of key populations, such as those in Chongqing, remains poorly understood. This study aimed to comprehensively evaluate the genetic diversity, population structure, gene flow, and demographic history of tufted deer across this critical region. We analyzed mitochondrial DNA (mtDNA) from 46 non-invasively collected fecal samples from three distinct populations: Jinfo Mountain (JF, n = 13), Simian Mountain (SM, n = 21), and the Northeastern Mountainous region (NEM, n = 12). Genetic variation was assessed using the cytochrome b (Cyt b) and D-loop regions, with analyses including Fst, gene flow (Nm), neutrality tests, and Bayesian Skyline Plots (BSP). Our results revealed the highest genetic diversity in the SM population, establishing it as a genetic hub. In contrast, the JF population exhibited the lowest diversity and significant genetic differentiation (>0.23) from the SM and NEM populations, indicating profound isolation. Gene flow was substantial between SM and NEM but severely restricted for the JF population. Demographic analyses, including BSP, indicated a long history of demographic stability followed by a significant expansion beginning in the Middle to Late Pleistocene. We conclude that the SM/NEM metapopulation serves as the genetic core for the species in this region, while the highly isolated JF population constitutes a distinct and vulnerable Management Unit (MU). This historical demographic expansion is likely linked to climatic and environmental changes during the Pleistocene, rather than recent anthropogenic factors. These findings underscore the urgent need for a dual conservation strategy: targeted management for the isolated JF population and the establishment of ecological corridors to connect the Jinfo Mountain and Simian Mountain populations, ensuring the long-term persistence of this unique species. Full article
(This article belongs to the Section Animal Genetics and Genomics)
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29 pages, 5503 KiB  
Article
Feature Selection Framework for Improved UAV-Based Detection of Solenopsis invicta Mounds in Agricultural Landscapes
by Chun-Han Shih, Cheng-En Song, Su-Fen Wang and Chung-Chi Lin
Insects 2025, 16(8), 793; https://doi.org/10.3390/insects16080793 - 31 Jul 2025
Viewed by 271
Abstract
The red imported fire ant (RIFA; Solenopsis invicta) is an invasive species that severely threatens ecology, agriculture, and public health in Taiwan. In this study, the feasibility of applying multispectral imagery captured by unmanned aerial vehicles (UAVs) to detect red fire ant [...] Read more.
The red imported fire ant (RIFA; Solenopsis invicta) is an invasive species that severely threatens ecology, agriculture, and public health in Taiwan. In this study, the feasibility of applying multispectral imagery captured by unmanned aerial vehicles (UAVs) to detect red fire ant mounds was evaluated in Fenlin Township, Hualien, Taiwan. A DJI Phantom 4 multispectral drone collected reflectance in five bands (blue, green, red, red-edge, and near-infrared), derived indices (normalized difference vegetation index, NDVI, soil-adjusted vegetation index, SAVI, and photochemical pigment reflectance index, PPR), and textural features. According to analysis of variance F-scores and random forest recursive feature elimination, vegetation indices and spectral features (e.g., NDVI, NIR, SAVI, and PPR) were the most significant predictors of ecological characteristics such as vegetation density and soil visibility. Texture features exhibited moderate importance and the potential to capture intricate spatial patterns in nonlinear models. Despite limitations in the analytics, including trade-offs related to flight height and environmental variability, the study findings suggest that UAVs are an inexpensive, high-precision means of obtaining multispectral data for RIFA monitoring. These findings can be used to develop efficient mass-detection protocols for integrated pest control, with broader implications for invasive species monitoring. Full article
(This article belongs to the Special Issue Surveillance and Management of Invasive Insects)
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24 pages, 5270 KiB  
Article
Ecophysiological Keys to the Success of a Native-Expansive Mediterranean Species in Threatened Coastal Dune Habitats
by Mario Fernández-Martínez, Carmen Jiménez-Carrasco, Mari Cruz Díaz Barradas, Juan B. Gallego-Fernández and María Zunzunegui
Plants 2025, 14(15), 2342; https://doi.org/10.3390/plants14152342 - 29 Jul 2025
Viewed by 215
Abstract
Range-expanding species, or neonatives, are native plants that spread beyond their original range due to recent climate or human-induced environmental changes. Retama monosperma was initially planted near the Guadalquivir estuary for dune stabilisation. However, changes in the sedimentary regime and animal-mediated dispersal have [...] Read more.
Range-expanding species, or neonatives, are native plants that spread beyond their original range due to recent climate or human-induced environmental changes. Retama monosperma was initially planted near the Guadalquivir estuary for dune stabilisation. However, changes in the sedimentary regime and animal-mediated dispersal have facilitated its exponential expansion, threatening endemic species and critical dune habitats. The main objective of this study was to identify the key functional traits that may explain the competitive advantage and rapid spread of R. monosperma in coastal dune ecosystems. We compared its seasonal responses with those of three co-occurring woody species, two native (Juniperus phoenicea and J. macrocarpa) and one naturalised (Pinus pinea), at two sites differing in groundwater availability within a coastal dune area (Doñana National Park, Spain). We measured water relations, leaf traits, stomatal conductance, photochemical efficiency, stable isotopes, and shoot elongation in 12 individuals per species. Repeated-measures ANOVA showed significant effects of species and species × season interaction for relative water content, shoot elongation, effective photochemical efficiency, and stable isotopes. R. monosperma showed significantly higher shoot elongation, relative water content, and photochemical efficiency in summer compared with the other species. Stable isotope data confirmed its nitrogen-fixing capacity. This characteristic, along with the higher seasonal plasticity, contributes to its competitive advantage. Given the ecological fragility of coastal dunes, understanding the functional traits favouring the success of neonatives such as R. monosperma is essential for biodiversity conservation and ecosystem management. Full article
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24 pages, 5785 KiB  
Article
Phylogenetic Reassessment of Murinae Inferred from the Mitogenome of the Monotypic Genus Dacnomys Endemic to Southeast Asia: New Insights into Genetic Diversity Erosion
by Zhongsong Wang, Di Zhao, Wenyu Song and Wenge Dong
Biology 2025, 14(8), 948; https://doi.org/10.3390/biology14080948 - 28 Jul 2025
Viewed by 335
Abstract
The Millard’s rat (Dacnomys millardi), a threatened murid endemic to Southeast Asian montane rainforests and the sole member of its monotypic genus, faces escalating endangered risks as a Near Threatened species in China’s Biodiversity Red List. This ecologically specialized rodent exhibits [...] Read more.
The Millard’s rat (Dacnomys millardi), a threatened murid endemic to Southeast Asian montane rainforests and the sole member of its monotypic genus, faces escalating endangered risks as a Near Threatened species in China’s Biodiversity Red List. This ecologically specialized rodent exhibits diagnostic morphological adaptations—hypertrophied upper molars and cryptic pelage—that underpin niche differentiation in undisturbed tropical/subtropical forests. Despite its evolutionary distinctiveness, the conservation prioritization given to Dacnomys is hindered due to a deficiency of data and unresolved phylogenetic relationships. Here, we integrated morphological analyses with the first complete mitogenome (16,289 bp in size; no structural rearrangements) of D. millardi to validate its phylogenetic placement within the subfamily Murinae and provide novel insights into genetic diversity erosion. Bayesian and maximum likelihood phylogenies robustly supported Dacnomys as sister to Leopoldamys (PP = 1.0; BS = 100%), with an early Pliocene divergence (~4.8 Mya, 95% HPD: 3.65–5.47 Mya). Additionally, based on its basal phylogenetic position within Murinae, we propose reclassifying Micromys from Rattini to the tribe Micromyini. Codon usage bias analyses revealed pervasive purifying selection (Ka/Ks < 1), constraining mitogenome evolution. Genetic diversity analyses showed low genetic variation (CYTB: π = 0.0135 ± 0.0023; COX1: π = 0.0101 ± 0.0025) in fragmented populations. We propose three new insights into this genetic diversity erosion. (1) Evolutionary constraints: genome-wide evolutionary conservation and shallow evolutionary history (~4.8 Mya) limited mutation accumulation. (2) Anthropogenic pressures: deforestation-driven fragmentation of habitats (>20,000 km2/year loss since 2000) has reduced effective population size, exacerbating genetic drift. (3) Ecological specialization: long-term adaptation to stable niches favored genomic optimization over adaptive flexibility. These findings necessitate suitable conservation action by enforcing protection of core habitats to prevent deforestation-driven population collapses and advocating IUCN reclassification of D. millardi from Data Deficient to Near Threatened. Full article
(This article belongs to the Section Genetics and Genomics)
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22 pages, 2531 KiB  
Article
Canopy Cover Drives Odonata Diversity and Conservation Prioritization in the Protected Wetland Complex of Thermaikos Gulf (Greece)
by Dimitris Kaltsas, Lydia Alvanou, Ioannis Ekklisiarchos, Dimitrios I. Raptis and Dimitrios N. Avtzis
Forests 2025, 16(7), 1181; https://doi.org/10.3390/f16071181 - 17 Jul 2025
Viewed by 240
Abstract
Odonata constitute an important invertebrate group that is strongly dependent on water conditions and sensitive to habitat disturbances, rendering them reliable indicators of habitat quality of both aquatic and terrestrial habitats. We studied the compositional and diversity patterns of Odonates in total, and [...] Read more.
Odonata constitute an important invertebrate group that is strongly dependent on water conditions and sensitive to habitat disturbances, rendering them reliable indicators of habitat quality of both aquatic and terrestrial habitats. We studied the compositional and diversity patterns of Odonates in total, and separately for the two suborders (Zygoptera, Anisoptera) in relation to geographic and ecological parameters at the riparian zone of four rivers and one canal within the Axios Delta National Park and the Natura 2000 SAC GR1220002 in northern Greece, using the line transect technique. In total, 6252 individuals belonging to 28 species were identified. The compositional and diversity patterns were significantly different between agricultural and natural sites. Odonata assemblages at croplands were comparatively poorer, dominated by a few, widely distributed, taxonomically proximal species, tolerant to environmental changes, as a result of modifications and consequent alterations of abiotic conditions at croplands, which also led to higher local contribution to β-diversity and species turnover. The absence of several percher, endophytic, and threatened species from agricultural sites led to significantly lower diversity, as a result of environmental filtering due to ecophysiological restrictions. Taxonomic and functional diversity, uniqueness, and Dragonfly Biotic Index (DBI) were significantly higher in riparian forests, due to the sensitivity of damselflies to dehydration, and the avoidance of habitat loss and extreme temperatures by dragonflies, which prefer natural shelters near the ecotone. The newly introduced Conservation Value Index (CVI) revealed 21 conservation hotspots of Odonata (14 at canopy cover sites), widely distributed within the borders of NATURA 2000 SAC GR1220002. Full article
(This article belongs to the Section Forest Biodiversity)
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15 pages, 1917 KiB  
Article
Home Range and Habitat Selection of Blue-Eared Pheasants Crossoptilon auritum During Breeding Season in Mountains of Southwest China
by Jinglin Peng, Xiaotong Shang, Fan Fan, Yong Zheng, Lianjun Zhao, Sheng Li, Yang Liu and Li Zhang
Animals 2025, 15(14), 2015; https://doi.org/10.3390/ani15142015 - 8 Jul 2025
Viewed by 307
Abstract
The blue-eared pheasant (Crossoptilon auritum), a Near Threatened (NT) species endemic to China, is primarily distributed across the northeastern region of the Qinghai–Tibetan Plateau. To bridge the fine-scale spatiotemporal gap in blue-eared pheasant behavioral ecology, this study combines satellite telemetry, movement [...] Read more.
The blue-eared pheasant (Crossoptilon auritum), a Near Threatened (NT) species endemic to China, is primarily distributed across the northeastern region of the Qinghai–Tibetan Plateau. To bridge the fine-scale spatiotemporal gap in blue-eared pheasant behavioral ecology, this study combines satellite telemetry, movement modeling, and field-based habitat assessments (vegetation, topography, human disturbance). This multidisciplinary approach reveals detailed patterns of their behavior throughout the breeding season. Using satellite-tracking data from six individuals (five males tracked at 4 h intervals; one female tracked hourly) in Wanglang National Nature Reserve (WLNNR), Sichuan Province during breeding seasons 2018–2019, we quantified their home ranges via Kernel Density Estimation (KDE) and examined the female movement patterns using a Hidden Markov Model (HMM). The results indicated male core (50% KDE: 21.93 ± 16.54 ha) and total (95% KDE: 158.30 ± 109.30 ha) home ranges, with spatial overlap among individuals but no significant temporal variation in home range size. Habitat selection analysis indicated that the blue-eared pheasants favored shrub-dominated areas at higher elevations (steep southeast-facing slopes), regions distant from human disturbance, and with abundant animal trails. We found that their movement patterns differed between sexes: the males exhibited higher daytime activity yet slower movement speeds, while the female remained predominantly near nests, making brief excursions before returning promptly. These results enhance our understanding of the movement ecology of blue-eared pheasants by revealing fine-scale breeding-season behaviors and habitat preferences through satellite-tracking. Such detailed insights provide an essential foundation for developing targeted conservation strategies, particularly regarding effective habitat management and zoning of human activities within the species’ range. Full article
(This article belongs to the Section Birds)
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14 pages, 2468 KiB  
Article
The Effects of Different Management Intensities on Biodiversity Conservation in the Wooded Grasslands of the Central Apennines
by Marina Allegrezza, Giulio Tesei, Matteo Francioni, Demetra Giovagnoli, Marco Bianchini and Paride D’Ottavio
Forests 2025, 16(7), 1034; https://doi.org/10.3390/f16071034 - 20 Jun 2025
Viewed by 225
Abstract
Wooded grasslands are agroforestry systems of high biological and cultural value, which are increasingly threatened by land-use abandonment in Mediterranean marginal areas. In the central-southern Apennines, little is known about their ecological dynamics under different management regimes. This study assesses how three management [...] Read more.
Wooded grasslands are agroforestry systems of high biological and cultural value, which are increasingly threatened by land-use abandonment in Mediterranean marginal areas. In the central-southern Apennines, little is known about their ecological dynamics under different management regimes. This study assesses how three management intensities (High: mowing plus grazing; Low: grazing only; and Abandoned: no management for ~50 years) affect the wooded grasslands in a protected area of the Central Apennines. Vascular plant composition and cover were recorded along radial transects from isolated Fagus sylvatica L. trunks to the adjacent grassland, with plots grouped in four positions (Trunk, Mid-canopy, Edge, and Grassland). The canopy cover, shrub height, species richness, and ecological roles of species were analysed. The results show that light availability, driven by canopy and shrub cover, shapes a gradient from shade-adapted species near the trunk to heliophilous grassland species in open areas. In the Abandoned site, shrub encroachment reduces light even beyond the canopy, facilitating the spread of shade-tolerant and pre-forest species, accelerating succession towards a closed-canopy forest. High-intensity management preserves floristic gradients and grassland species, while Low-intensity management shows early signs of succession at the canopy edge. These findings highlight the importance of traditional mowing and grazing in maintaining the biodiversity and ecological functions of wooded grasslands and emphasize the need for timely interventions where management declines. Full article
(This article belongs to the Section Forest Ecology and Management)
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16 pages, 3476 KiB  
Article
Taxonomy, Lectotypification, and Conservation of the Genus Phyllodium (Fabaceae: Desmodieae) in Cambodia, Laos, and Vietnam
by Witsanu Saisorn, Jiratthi Satthaphorn and Shuichiro Tagane
Plants 2025, 14(12), 1822; https://doi.org/10.3390/plants14121822 - 13 Jun 2025
Viewed by 1286
Abstract
A taxonomy of the genus Phyllodium Desv. in Cambodia, Laos, and Vietnam is presented. The plant specimens collected from the fields and herbarium specimens kept at Asian and European herbaria are examined. The IUCN conservation status of each species at regional and national [...] Read more.
A taxonomy of the genus Phyllodium Desv. in Cambodia, Laos, and Vietnam is presented. The plant specimens collected from the fields and herbarium specimens kept at Asian and European herbaria are examined. The IUCN conservation status of each species at regional and national levels is assessed. Five species are enumerated, viz., Phyllodium elegans (Lour.) Desv., P. kurzianum (Kuntze) H.Ohashi, P. longipes (Craib) Schindl., P. pulchellum (L.) Desv., and P. vestitum Benth. Lectotypification of two names, Desmodium longipes Craib and D. tonkinense Schindl., is performed. A key to the species, description, distribution, ecology, phenology, vernacular names, full list of specimens examined, and photographs are provided. The conservation status of five Phyllodium species varies across Cambodia, Laos, Vietnam, and Indochina. Phyllodium elegans and P. pulchellum are consistently Least Concern (LC) in all regions. Phyllodium kurzianum is Data Deficient (DD) in Laos, Near Threatened (NT) in Vietnam, and LC in Indochina. Phyllodium longipes is EN in Cambodia but LC elsewhere. Phyllodium vestitum is NT in Cambodia, Vulnerable (VU) in Laos and Vietnam, and LC in Indochina. The taxonomic information provided in this work will contribute to the advancement of the Flora of Cambodia, Laos, and Vietnam and the conservation status of each species proposed in this paper can be used for future conservation planning. Full article
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28 pages, 2448 KiB  
Article
Influence of Increasing Fires on Mixed Conifer Stand Dynamics in the U.S. Southwest
by Simon D. Baker, Kristen M. Waring, David Auty and Nicholas Wilhelmi
Forests 2025, 16(6), 967; https://doi.org/10.3390/f16060967 - 7 Jun 2025
Viewed by 614
Abstract
(1) Stand-replacing fires may threaten the continued stability of mixed conifer forests in the U.S. Southwest. Increasing fire frequency and severity have made post-fire forest recovery trajectories uncertain for many coniferous species, potentially leading to long-term shifts in forest structure and composition. (2) [...] Read more.
(1) Stand-replacing fires may threaten the continued stability of mixed conifer forests in the U.S. Southwest. Increasing fire frequency and severity have made post-fire forest recovery trajectories uncertain for many coniferous species, potentially leading to long-term shifts in forest structure and composition. (2) The purpose of this study was to examine post-fire stand dynamics over a 10-year period, using a network of permanent plots established prior to wildfire events across Arizona and New Mexico. We assessed changes in overstory composition, regeneration, and fuel loading across different fire severities. (3) High severity fire caused near-total overstory mortality, with little to no conifer regeneration and abundant sprouting hardwood regeneration. Lower severity fire was more favorable to fire-tolerant conifer species; however, mortality among mature trees was high, and fire-intolerant conifers were either diminished or extirpated completely. (4) In high severity fires, changes in overstory and understory structure and composition may be long-lasting. Additionally, increased fuel loads following high severity fire suggests a heightened risk of reburns, potentially perpetuating ecotype conversion. Our findings highlight the need for active management strategies, including reforestation and fuel reduction treatments, to support forest resilience for mixed conifer ecosystems in the US Southwest and similar forest types in other regions in the face of ongoing climate and fire regime changes. Full article
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16 pages, 4506 KiB  
Article
Where Endemism Meets Urgency: Native Cactaceae and the Conservation Crisis in the Subtropical South America Pampa
by Alessandra Almeida de Menezes, Eugenia Jacira Bolacel Braga and João Iganci
Diversity 2025, 17(6), 397; https://doi.org/10.3390/d17060397 - 4 Jun 2025
Viewed by 487
Abstract
The subtropical grasslands of South America are known as Pampa, span parts of Brazil, Uruguay, and Argentina, and are undergoing rapid and alarming transformations due to agricultural expansion, habitat fragmentation, and climate change. Despite this, these areas harbor a remarkable diversity of Cactaceae, [...] Read more.
The subtropical grasslands of South America are known as Pampa, span parts of Brazil, Uruguay, and Argentina, and are undergoing rapid and alarming transformations due to agricultural expansion, habitat fragmentation, and climate change. Despite this, these areas harbor a remarkable diversity of Cactaceae, including a high proportion of endemic and threatened species. This study offers the first comprehensive inventory of native and endemic cactus taxa in the Pampean province of the Chacoan domain, integrating data from georeferenced herbarium records, biodiversity databases, and fieldwork. A total of 111 native taxa were identified, of which 62% are endemic to the region. Spatial analyses reveal that many species occur outside protected areas, with hotspots of richness and endemism located near international borders and in poorly studied regions. These findings underscore the urgent need to reassess conservation priorities in Pampa, where biodiversity is being lost at an accelerating pace. By identifying critical areas for conservation and highlighting gaps in species assessments, the present study contributes essential data to support public policy, conservation planning, and the establishment of cross-border strategies for the protection of this unique and vulnerable flora. Full article
(This article belongs to the Section Biodiversity Conservation)
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18 pages, 5983 KiB  
Article
Plasma and Fecal Metabolites Combined with Gut Microbiome Reveal Systemic Metabolic Shifts in 60Co Gamma-Irradiated Rats
by Jie Zong, Haiyang Wu, Xuan Hu, Ami Yao, Wenhua Zhu, Guifang Dou, Shuchen Liu, Xiaoxia Zhu, Ruolan Gu, Yunbo Sun, Zhuona Wu, Shanshan Wang and Hui Gan
Metabolites 2025, 15(6), 363; https://doi.org/10.3390/metabo15060363 - 29 May 2025
Viewed by 589
Abstract
Background: High-dose γ-ray exposure (≥7 Gy) in nuclear emergencies induces life-threatening acute radiation syndrome, characterized by rapid hematopoietic collapse (leukocytes <0.5 × 10⁹/L) and gastrointestinal barrier failure. While clinical biomarkers like leukocyte depletion guide current therapies targeting myelosuppression, the concomitant metabolic disturbances [...] Read more.
Background: High-dose γ-ray exposure (≥7 Gy) in nuclear emergencies induces life-threatening acute radiation syndrome, characterized by rapid hematopoietic collapse (leukocytes <0.5 × 10⁹/L) and gastrointestinal barrier failure. While clinical biomarkers like leukocyte depletion guide current therapies targeting myelosuppression, the concomitant metabolic disturbances and gut microbiota dysbiosis—critical determinants of delayed mortality—remain insufficiently profiled across the 28-day injury-recovery continuum. Methods: This study investigates the effects of 60Co γ-ray irradiation on metabolic characteristics and gut microbiota in Sprague Dawley rats using untargeted metabolomics and 16S rRNA sequencing. Meanwhile, body weight and complete blood counts were measured. Results: Body weight exhibited significant fluctuations, with the most pronounced deviation observed at 14 days. Blood counts revealed a rapid decline in white blood cells, red blood cells, and platelets post-irradiation, reaching nadirs at 7–14 days, followed by gradual recovery to near-normal levels by 28 days. Untargeted metabolomics identified 32 upregulated and 33 downregulated plasma metabolites at 14 days post-irradiation, while fecal metabolites showed 47 upregulated and 18 downregulated species at 3 days. Key metabolic pathways impacted included Glycerophospholipid metabolism, alpha-linolenic acid metabolism, and biosynthesis of unsaturated fatty acids. Gut microbiota analysis demonstrated no significant change in α-diversity but significant β-diversity shifts (p < 0.05), indicating a marked alteration in the compositional structure of the intestinal microbial community following radiation exposure. Principal coordinate analysis confirmed distinct clustering between control and irradiated groups, with increased abundance of Bacteroidota and decreased Firmicutes in irradiated rats. These findings highlight dynamic metabolic and microbial disruptions post-irradiation, with recovery patterns suggesting a 28-day restoration cycle. Spearman’s rank correlation analysis explored associations between the top 20 fecal metabolites and 50 abundant bacterial taxa. Norank_f_Muribaculaceae, Prevotellaceae_UCG-001, and Bacteroides showed significant correlations with various radiation-altered metabolites, highlighting metabolite–microbiota relationships post-radiation. Conclusions: This study provides insights into potential biomarkers for radiation-induced physiological damage and underscores the interplay between systemic metabolism and gut microbiota in radiation response. Full article
(This article belongs to the Section Advances in Metabolomics)
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21 pages, 8188 KiB  
Article
Spatio-Temporal Trends in Wildlife-Vehicle Collisions: Implications for Socio-Ecological Sustainability
by Manju Shree Thakur, Prakash Chandra Aryal, Hari Prasad Pandey and Tek Narayan Maraseni
Animals 2025, 15(10), 1478; https://doi.org/10.3390/ani15101478 - 20 May 2025
Viewed by 1789
Abstract
The conservation of biodiversity and the balance between ecological and societal needs are critical but often contested global issues. Wildlife-vehicle collision (WVC) on vital infrastructure, especially linear infrastructure, remains a persistent challenge from policy to practice and poses a serious life-threatening implication to [...] Read more.
The conservation of biodiversity and the balance between ecological and societal needs are critical but often contested global issues. Wildlife-vehicle collision (WVC) on vital infrastructure, especially linear infrastructure, remains a persistent challenge from policy to practice and poses a serious life-threatening implication to humans and other non-human lives. Addressing this issue effectively requires solutions that provide win-win outcomes from both ecological and societal perspectives. This study critically analyzes a decade of roadkill incidents along Nepal’s longest East-West national highway, which passes through a biologically diverse national park in the western Terai Arc Landscape Area (TAL). Findings are drawn from field-based primary data collection of the period 2012–2022, secondary literature review, key informant interviews, and spatial analysis. The study reveals significant variations in roadkill incidence across areas and years. Despite Bardia National Park being larger and having a higher wildlife density, Banke National Park recorded higher roadkill rates. This is attributed to insufficient mitigation measures and law enforcement, more straight highway segments, and the absence of buffer zones between the core park and adjacent forest areas—only a road separates them. Wild boars (Sus scrofa) and spotted deer (Axis axis), the primary prey of Bengal tigers (Panthera tigris tigris), were the most frequently road-killed species. This may contribute to human-tiger conflicts, as observed in the study areas. Seasonal trends showed that reptiles were at higher risk during the wet season and mammals during winter. Hotspots were often located near checkpoints and water bodies, highlighting the need for targeted mitigation efforts such as wildlife crossings and provisioning wildlife requirements such as water, grassland, and shelter away from the regular traffic roads. Roadkill frequency was also influenced by forest cover and time of day, with more incidents occurring at dawn and dusk when most of the herbivores become more active in search of food, shelter, water, and their herds. The findings underscore the importance of road characteristics, animal behavior, and landscape features in roadkill occurrences. Effective mitigation strategies include wildlife crossings, speed limits, warning signs, and public education campaigns. Further research is needed to understand the factors in driving variations between parks and to assess the effectiveness of mitigation measures. Full article
(This article belongs to the Section Wildlife)
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12 pages, 1150 KiB  
Article
Genome-Wide Microsatellite Characterization and Molecular Marker Development of Himalayan Griffon (Gyps himalayensis)
by Weibin Guo, Dianhua Ke, Changcao Wang and Haiying Fan
Animals 2025, 15(10), 1438; https://doi.org/10.3390/ani15101438 - 16 May 2025
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Abstract
The Himalayan griffon (Gyps himalayensis), an obligate scavenging bird in the Qinghai–Tibet Plateau, provides significant ecological services but is currently listed as near threatened. Despite their importance for conservation, genome-wide screening for microsatellites (or SSRs) in G. himalayensis and the development [...] Read more.
The Himalayan griffon (Gyps himalayensis), an obligate scavenging bird in the Qinghai–Tibet Plateau, provides significant ecological services but is currently listed as near threatened. Despite their importance for conservation, genome-wide screening for microsatellites (or SSRs) in G. himalayensis and the development of corresponding molecular markers have been lacking. This study presents the first in-depth characterization of genome-wide microsatellites in G. himalayensis and the successful development of polymorphic SSR markers. A total of 240,741 microsatellite loci were detected in the G. himalayensis genome, with an average density of 202.2 SSRs per Mb, accounting for 0.44% of the genome. Mononucleotide repeats (53.2%) were the most prevalent among the different microsatellite motif types. Additionally, 100 primer pairs were initially identified, with 17 found to be polymorphic markers. These loci hold significant potential for revealing genotypic diversity in G. himalayensis, thereby laying a foundation for the conservation of this species. Full article
(This article belongs to the Special Issue Unveiling the Breeding Biology and Life History Evolution in Birds)
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