Search Results (4,422)

Mid- to high-elevation coniferous forests of Yunnan are characterized by complex topography, but direct evidence remains limited regarding the occurrence of the pine wood nematode, Bursaphelenchus xylophilus, under montane forest conditions. In this study, 45 wood segment samples were collected from trees in three mid- to high-elevation coniferous forest sites in northwestern Yunnan whose crowns showed approximately one-third needle discoloration. Nematodes were extracted using the Baermann funnel method and identified based on the 28S rDNA D2–D3 region, phylogenetic analysis, and auxiliary morphological observations. A total of 10 molecular nematode taxa were detected. Bursaphelenchus mucronatus-like was the most frequent taxon, whereas B. xylophilus was detected as a single individual from one Pinus densata sample. In inoculation experiments with the pine wood nematode strain PNFT01, Pinus yunnanensis seedlings developed progressive needle chlorosis and wilting, P. densata showed only mild symptoms, and Picea likiangensis remained symptomless during the 45-day observation period. Sterile-water controls remained symptomless throughout the experiment. Symptom scores differed significantly among host species at 30 and 45 d after inoculation (Kruskal–Wallis test, p = 0.001), and pine wood nematodes were re-isolated from all three host species. These results provide molecular evidence for rare B. xylophilus occurrence in wood from weakened trees in mid- to high-elevation coniferous forests of Yunnan and indicate contrasting symptom development among inoculated seedlings. The findings do not demonstrate established pine wilt disease outbreaks in the region, but they support continued monitoring of the nematode, potential vector insects, and susceptible hosts under montane forest conditions. Full article

Gustatory perception in honeybees is a key determinant of foraging decisions and pollen source selection. However, the molecular mechanisms underlying this sensory discrimination remain poorly understood. To investigate these mechanisms during the collection of pollen from different floral sources, this study utilized antennae from worker bees foraging on pear and rapeseed pollen, and non-pollen-foraging workers as controls. Illumina high-throughput transcriptome sequencing was employed to identify differentially expressed genes (DEGs), perform functional annotation, and characterize gustatory receptor (GR) genes. Compared with the control group, 583 DEGs and 516 DEGs were identified in pear-pollen and rapeseed-pollen foragers, respectively, whereas only 73 DEGs were detected between the two pollen-foraging groups. Several DEGs were associated with chemosensory perception, signal transduction, energy metabolism, and immune responses. Notably, genes involved in membrane-associated signaling and stimulus response exhibited differential expression patterns among foraging groups, suggesting adaptive molecular responses to distinct floral resources. Gene Ontology (GO) analysis indicated that DEGs were primarily associated with cellular processes, membrane components, and binding functions. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment highlighted significant involvement in phagosome, phosphatidylinositol signaling system, oxidative phosphorylation, and extracellular matrix–receptor interaction. Notably, seven GR-related genes were identified in the antennal transcriptome, including five known GR genes and two novel candidates, all with complete open reading frames. Four of these genes featured the canonical seven-transmembrane domain structure of insect GRs. Phylogenetic analysis, in addition to the known sugar receptors AmelGR43a, AmelGR64f, and AmelGR64f-X1, based on GRs from Apis mellifera and Drosophila melanogaster suggested that AmelGR28b, AmelGR10, AmelGR12, and AmelGR13 may belong to the bitter taste receptor family. Quantitative real-time PCR (qRT-PCR) validation demonstrated that the expression patterns of the selected seven DEGs were consistent with the RNA-seq results. This study reveals differential expression patterns and potential functional divergence of gustatory receptor genes in Apis mellifera during pollen collection from different floral sources. It provides important molecular evidence for understanding how honeybees accurately recognize and preferentially forage specific pollen sources via gustatory perception, and offers valuable theoretical and practical insights for honeybee behavioral ecology and crop pollination management. Full article

B Dengue fever represents a significant public health challenge in Saudi Arabia, yet comprehensive molecular characterization of circulating serotypes remains limited. This study combines epidemiological and phylogenetic analyses to understand dengue virus (DENV) dynamics in the Kingdom. A systematic review and meta-analysis of dengue epidemiological data from Saudi Arabia (1992–2026) was the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines. All available DENV envelope (E) gene sequences from Saudi human cases (1992–2023) were retrieved from GenBank and Global Initiative on Sharing All Influenza Data (GISAID). Phylogenetic trees were constructed using maximum likelihood with 1000 bootstrap replicates and best-fit models. Selection pressure was analyzed using SLAC, FEL, FUBAR, and MEME methods, while glycosylation sites were predicted with NetNGlyc and NetOGlyc. The pooled seroprevalence from 25 studies (n = 32,393) was 40.71% (95% CI: 26.96–56.10%). DENV-2 predominated (80.25%), followed by DENV-1 and DENV-3, with DENV-4 remaining rare (0.42%). Males (67–78%) and adults aged 25–44 years were most affected. Phylogenetic analysis of 50 Saudi isolates showed DENV-1 strains clustered within American–African (1994) and Asian (2004–2011) genotypes, all DENV-2 within the Cosmopolitan genotype, and all DENV-3 within Genotype III (bootstrap support 99–100%). Selection pressure analysis indicated pervasive positive selection in DENV-2, episodic selection across serotypes, and strong purifying selection in the E gene. Several amino acid substitutions with potential functional importance were identified. No DENV-4 E gene sequences from Saudi Arabia are publicly available. Dengue in western Saudi Arabia is characterized by DENV-2 predominance, co-circulation of three serotypes, and multiple introductions. The absence of DENV-4 sequences highlights critical surveillance gaps. Sustained molecular surveillance, expanded genomic sequencing, and data sharing are essential for effective prevention and vaccine preparedness. Full article

As a member of the Alphavirus genus, Getah virus (GETV) has become an emerging pathogen posing severe threats to animal health and public health security. In recent years, GETV has caused increasing outbreaks in swine herds, leading to substantial economic losses in the pig industry in China. Here, we report continuous GETV outbreaks on pig farms across southeastern China between September 2024 and December 2025. A total of 185 clinical samples were examined, among which 27 were positive (14.6%). Subsequently, five GETV strains were successfully isolated and subjected to whole-genome sequencing. Phylogenetic analysis revealed that all the 5 isolated strains belonged to genotype III(GIII), with two strains (GETV-AHX2024 and GETV-JS2024) forming a distinct GIII variant clade. Notably, multiple specific amino acid mutations were identified in the nsp3, C, E2, 6K, and E1 proteins and 3′UTR of these GIII variant strains. Pathogenicity in mice revealed that mice infected with the GIII variant strain GETV-JS2024 exhibited a longer viral shedding period compared with other strains. These findings highlight the emergence of GETV GIII variant strains in southeastern China and suggest their altered pathogenic performance in mice. These results supplied critical data for molecular surveillance and subsequent pathogenic analysis of GETV in China. Full article

The WUSCHEL-related homeobox (WOX) gene family plays crucial roles in plant growth, development, and stress responses. In this study, a comprehensive genome-wide analysis of WOX genes was conducted in three Populus species, P. euphratica, P. pruinosa, and P. deltoides. A total of 16, 16, and 21 WOX genes were identified, respectively, and classified into three clades (ancient, intermediate, and WUS/modern) based on phylogenetic relationships. Structural analyses revealed highly conserved homeodomain motifs and similar exon–intron organizations, indicating strong evolutionary conservation. Furthermore, synteny analyses demonstrated that whole-genome duplication or segmental duplication events were the primary drivers of WOX gene family expansion, with most duplicated gene pairs undergoing purifying selection. Promoter analysis identified abundant cis-acting elements related to light responsiveness, hormone signaling, and stress responses. Notably, transcriptomic profiling during seed germination under drought and salt stress revealed distinct interspecific expression patterns and temporal dynamics between the two desert poplars. Specifically, members such as PeWox11 and PpWox2 were significantly induced, suggesting their potential involvement in abiotic stress adaptation. These findings provide comprehensive insights into the evolutionary conservation and divergence of WOX genes in Populus, establishing a theoretical foundation for the molecular breeding of stress-tolerant woody plants. Full article

The Cysteine-rich Polycomb-like Protein (CPP) gene family is a class of transcription factors containing conserved CXC domains that are widely involved in the regulation of plant growth and development, cell division, and stress responses. Based on the ginseng genome and transcriptome database, all members of the PgCPP gene family in Panax ginseng were systematically identified, and comprehensive bioinformatics analyses, including phylogenetic, conserved domain, chromosomal localization and collinearity, cis-acting element, and expression pattern analyses, were conducted. In this study, we identified 44 PgCPP gene family members in ginseng, which were unevenly localized on multiple chromosomes. The phylogenetic tree divided them into three subfamilies, with members in the same subfamily being highly conserved. Conserved domain analysis revealed that all PgCPPs contain typical CXC motifs. Cis-acting elements were abundant in light response, hormone responses (abscisic acid, methyl jasmonate, salicylic acid), and stress response elements. Expression heatmaps demonstrated that different members have specific expression patterns across different ages, tissues, and species. After treatment with MeJA, transcriptional suppression of PgCPP03-4 and PgCPP03-13 was observed, and their expression levels demonstrated significant negative correlations with the contents of six protopanaxadiol-type ginsenosides. These findings suggest that PgCPP03-4 and PgCPP03-13 may act as negative regulators of protopanaxadiol-type ginsenoside biosynthesis within the MeJA signaling pathway. This systematic characterization and identification of the CPP gene family members in P. ginseng establishes a foundational framework for future functional validation and molecular breeding initiatives. Full article

In Mexico, since June 2025, human cases of myiasis caused by Cochliomyia hominivorax (the screwworm) have been identified, prompting health authorities to issue a surveillance alert for potential infections by this fly. Here we report the identification and interdisciplinary management of a case of nasal myiasis caused by Lucilia sericata. In September 2025, a 40-year-old Hispanic man was admitted to the emergency room due to an altered mental status; after a 17-day hospital stay, nasal larvae were detected. The larvae were submitted for morphological identification by microscopy and molecular identification by polymerase chain reaction, using ITS-2 and 16S loci as nuclear and mitochondrial markers, respectively; the amplicons were purified and sequenced, and a Bayesian phylogenetic analysis was performed. Morphological analysis showed that they were L. sericata larvae at different developmental stages (1st to 3rd instars). Molecular analysis confirmed the morphological result, as phylogenetic inferences showed a clear grouping of the sequences within the L. sericata cluster. While remaining vigilant for possible human cases of myiasis caused by C. hominivorax, here, we confirmed by morphological and molecular analysis the identification of an unexpected case of nasal myiasis caused by L. sericata, demonstrating the importance of care in all aspects of thorough epidemiological surveillance and the interdisciplinary management to address these alerts and any related cases. Full article

Canine vector-borne pathogens (CVBPs) pose a major challenge in shelter medicine, yet data from shelter populations in Vietnam remain unknown. This study determined the prevalence, and risk factors of CVBPs in shelter dogs in northern Vietnam. Blood samples from 300 apparently healthy dogs from three shelters in Hanoi were screened by PCR for Babesia vogeli, Hepatozoon canis, Rickettsia spp., and Mycoplasma spp. Representative positive amplicons underwent Sanger sequencing and BLAST analysis. Sequence analysis showed 96.07–100% identity with reference strains, with phylogenetic trees confirming clustering within B. vogeli, H. canis, M. haemocanis and R. felis clades. Overall, 43.7% (131/300) of dogs were infected with at least one pathogen, with shelter-level prevalence ranging from 38.0 to 52.0%. Single infections accounted for 35.0%, dominated by R. felis (25.7%) and M. haemocanis (24.0%), B. vogeli and H. canis were low (1.3% each). Co-infections were found in 8.7% of dogs, primarily R. felis and M. haemocanis (8.3%). No evaluated host factors (age, sex, breed, body size, housing style) significantly associated with infection (p > 0.05). This study provides the first molecular evidence of canine vector-borne pathogen circulation in Vietnamese shelter dogs, emphasizing the need of ectoparasite control and One Health-oriented surveillance. Full article

Five new species of Orthosinus Motschulsky, 1863 from China are described: O. borisi sp. nov. (♂♀) and O. urceolatus sp. nov. (♂♀) from Xizang Autonomous Region, O. diaoluoshanensis sp. nov. (♂) from Hainan Province, O. sulcatus sp. nov. (♂♀) from Sichuan Province and O. tengchongensis sp. nov. (♂) from Yunnan Province. Detailed morphological descriptions, diagnostic illustrations, and habitus photographs are provided for each species. An identification key and a distribution map for all known Chinese species of Orthosinus are also provided. With these additions, the number of known Chinese species of Orthosinus is increased from two to seven. Molecular phylogenetic and species delimitation analyses of the COI gene were additionally performed for two of the newly described species, O. urceolatus sp. nov. and O. sulcatus sp. nov., along with other congeneric and outgroup specimens. Full article

Carex is among the most species-rich genera of angiosperms and plays important ecological roles in wetlands, alpine regions, and temperate ecosystems worldwide. However, research on this genus has long been challenged by pronounced phenotypic plasticity, reduced floral morphology, frequent hybridization, and complex chromosomal evolution. Although recent advances in molecular phylogenetics, comparative genomics, reproductive biology, and ecophysiology have substantially expanded the knowledge of Carex, these findings remain fragmented across disciplines. Here, we synthesize current evidence on Carex taxonomy and phylogeny, genomic and karyotypic evolution, reproductive and life history strategies, abiotic stress responses, ecosystem functions, and bioresource potential within a cross-scale framework. This review emphasizes how genomic architecture, life history variation, and ecophysiological adaptation jointly shape species diversification and ecosystem functioning, while clarifying their implications for habitat restoration and the sustainable use of Carex resources. Finally, we identify key priorities for future research, including improved phylogenomic resolution, comparative functional studies, climate-resilience assessment, and germplasm conservation and sustainable use. Full article

Chestnut brown rot caused by Gnomoniopsis smithogilvyi represents an increasing threat to Castanea sativa production, although its endophytic behaviour and response to pre-harvest management strategies under field conditions remain poorly understood. This study evaluated the occurrence of G. smithogilvyi in different chestnut tissues and assessed the effects of targeted field treatments on pathogen colonisation and fruit quality in commercial orchards located in north-eastern Portugal. Field trials included applications of a biological fungicide (Problad^®), an inorganic micronutrient fertilizer (Fungicrops Bio^®), a sulfur-micronutrient fertilizer (KSC Mix^®), and a potassium-phosphonate chemical fungicide (Fosetyl-Al^®), alongside untreated control orchards. Samples of leaves, branches, burrs, and nuts were subjected to microbiological and molecular analyses, while fruit external quality parameters were also assessed. G. smithogilvyi was detected in all analysed organs, confirming its widespread endophytic occurrence. Treatment effects were more pronounced in reproductive tissues, with Problad^® and Fosetyl-Al^® significantly reducing pathogen incidence in burrs and nuts compared with the control. KSC Mix^® promoted fruit development but did not significantly reduce fungal incidence. Treated orchards generally showed improved fruit quality and lower insect infestation. Phylogenetic analysis confirmed the identity of all isolates as G. smithogilvyi. Overall, the results highlight the complexity of managing chestnut brown rot and support the need for integrated and sustainable disease management strategies. Full article

Porcine epidemic diarrhea virus (PEDV) continues to undergo genetic evolution and remains a major etiological agent of enteric disease in swine, causing significant economic losses worldwide. This study investigated the molecular epidemiology and genetic characteristics of PEDV circulating in Chongqing, China, between 2022 and 2024. A total of 296 diarrheic piglet samples collected from nine regions were screened using RT-qPCR, of which 48.31% (143/296) tested positive for PEDV. A subset of positive samples was subjected to S gene amplification and sequencing, yielding 15 complete sequences. Phylogenetic analysis revealed that all sequenced strains clustered within the G2c lineage and showed high nucleotide similarity (93.37–94.09%) to the classical CV777 strain. Recombination analysis indicated potential recombination events among field strains involving S-INDEL and G2b-like parental lineages, although these findings are based on a limited number of sequences. Sequence analysis identified multiple amino acid substitutions within the COE antigenic region, while other neutralizing epitopes (SS2, SS6, and 2C10) remained largely conserved. In addition, variation in predicted N-glycosylation sites was observed among some strains. Structural modelling suggested that these changes may influence spike protein conformation and antigenic properties; however, these interpretations are based on in silico analysis and require experimental validation. Overall, the findings indicate ongoing genetic evolution of PEDV in Chongqing and suggest circulation of G2c-associated variants in diarrheic piglets. However, given the limited and non-random nature of sequencing, these results may not fully represent the broader viral population. Continued large-scale molecular surveillance and functional studies are needed to better understand PEDV evolution and to support the development of improved control strategies and vaccines. Full article

Colorectal cancer (CRC) remains the third most common malignancy worldwide and a leading cause of cancer mortality, largely driven by metastatic dissemination. Among metastatic routes, lymphatic spread is crucial to determine the prognosis and establish an adequate therapeutic strategy. Lymph node metastasis (LNM) defines stage III disease in the TNM classification, guiding adjuvant chemotherapy and surgical planning. However, nodal staging based on lymphadenectomy and histopathology is invasive, time-consuming, and may lead to overtreatment. Conventional imaging modalities, including computed tomography, magnetic resonance imaging, and endorectal ultrasound, show limited sensitivity and specificity for small or micro-metastatic nodes. Despite multimodal progress, no non-invasive technique reliably identifies malignant nodes in real time. PET–MRI, contrast-enhanced ultrasound, photoacoustic and fluorescence approaches, ICG mapping, and sentinel node biopsy improve detection but remain limited by specificity, cost, or availability. Extranodal extension (ENE) and tumor deposits (TDs) carry major prognostic value, reflecting aggressive biology and association with distant spread. Meanwhile, phylogenetic studies challenge linear dissemination models, indicating that some metastases arise directly from the primary tumor or TDs rather than LNMs. These data support refinement of staging and surgical strategies according to tumor biology rather than purely anatomical criteria. High-frequency quantitative ultrasound (HF-QUS) enables real-time, operator-independent, three-dimensional nodal assessment with reported sensitivity and specificity exceeding 85%. Combined with artificial intelligence and molecular profiling, it may support biologically informed staging, reduce unnecessary surgery, and foster precision oncology. Lymphatic dissemination in CRC offers a platform to merge tumor biology with technological innovation, where advanced imaging, molecular insight, and artificial intelligence may redefine nodal staging toward precision, non-invasive care. Full article

Nontuberculous mycobacteria (NTM) are environmental opportunistic pathogens with increasing clinical relevance worldwide. Among them, the Mycobacterium avium complex (MAC), comprising species such as M. avium, M. intracellulare, and M. chimaera, is responsible for the majority of human NTM diseases. MAC causes chronic pulmonary disease and disseminated infections, particularly in immunocompromised individuals, although infections in immunocompetent hosts are increasingly reported. Despite advances in molecular diagnostics, accurate species- and subspecies-level identification remains challenging due to high genetic diversity and biased genomic databases. This limitation hampers the understanding of transmission dynamics, antimicrobial resistance patterns, and epidemiological trends. In recent years, whole-genome sequencing (WGS) has emerged as a key tool for high-resolution typing, enabling improved phylogenetic analysis, outbreak investigation, and resistance prediction. This review summarizes current knowledge on MAC taxonomy, clinical manifestations, antimicrobial resistance mechanisms, and ecological distribution, with a particular focus on the role of genomic surveillance. We highlight the need for integrated genomic frameworks to support early detection, accurate classification, and effective public health surveillance of MAC infections globally in a One Health perspective. Full article

Dybowski’s frog (Rana dybowskii) supports a multi-billion-dollar aquaculture sector in northern China and plays a critical ecological role in forest ecosystems. Despite its immense economic value, germplasm degradation and the mystery surrounding its homomorphic sex-determination system present major bottlenecks for the industry. Here, we integrated PacBio HiFi long-read sequencing, Illumina short-read sequencing, and High-Throughput Chromosome Conformation Capture (Hi-C) technologies to assemble the first chromosome-level reference genome of R. dybowskii. The final assembled genome size is 3.77 Gb, with a contig N50 of 16.27 Mb and a scaffold N50 of 41.54 Mb. A total of 97.82% of the sequences were successfully anchored onto 12 definitive pseudochromosomes corresponding to haploid chromosome number. Repetitive elements account for 65.61% of the genome, characterized by an unusual dominance of DNA transposons (37.19%) over retrotransposons, suggesting a genomic landscape shaped by extreme cold adaptation. Combining multi-tissue transcriptomic evidence, we structurally predicted 26,862 protein-coding genes, and the predicted gene set showed a BUSCO completeness of 96.1%. Functional annotation successfully categorized 96.55% of the total genes. This genomic resource successfully fills a crucial phylogenetic gap in the Rana genus, driving high-efficiency molecular breeding and sustainable conservation of this economic amphibian. Full article