Search Results (1,676)

 Heat stress transcription factor (Hsf) families play important roles in abiotic stress responses. However, previous studies reported that HsfBs genes may play diverse roles in response to heat stress. Here, we conducted functional analysis on a woodland strawberry Class B Hsf gene, FvHsfB1a, to improve thermotolerance. The structure of FvHsfB1a contains a typical Hsf domain for DNA binding at the N-terminus, and FvHsfB1a belongs to the B1 family of Hsfs. The FvHsfB1a protein was localized in the nucleus. The FvHsfB1a gene was expressed in various strawberry tissues and highly induced by heat treatment. Under heat stress conditions, ectopic expression of FvHsfB1a in Arabidopsis improves thermotolerance, with higher germination and survival rates, a longer primary root length, higher proline and chlorophyll contents, lower malonaldehyde (MDA) and O²⁻ contents, better enzyme activities, and greater expression of heat-responsive and stress-related genes compared to WT. FvWRKY75 activates the promoter of the FvHsfB1a gene through recognizing the W-box element. Similarly, FvWRKY75-OE lines also displayed a heat-tolerant phenotype, exhibiting more proline and chlorophyll contents, lower MDA and O²⁻ contents, and higher enzyme activities under heat stress. Taken together, our study indicates that FvHsfB1a is a positive regulator of heat stress.  Full article

This study investigates the concept of landscape services (LS), which integrate environmental and sociocultural dimensions of sustainable development. Recognizing landscapes as essential to daily life and well-being, the research aims to support sustainable spatial planning by analyzing both their potential and their actual use. The study has three main objectives: (1) to assess the potential of 16 selected landscape types to provide six key LS through expert evaluation; (2) to determine actual LS usage patterns among the local community (residents); and (3) to identify agreements and discrepancies between expert assessments and resident use. The services analyzed include providing space for daily activities; regulating spatial structure through diversity and compositional richness; enhancing physical and mental health; enabling passive and active recreation; supporting personal fulfillment; and fostering social interaction. Expert-based surveys and participatory mapping with residents were used to assess the provision and use of LS. The results indicate consistent evaluations for forest and historical urban landscapes (high potential and use) and mining and transportation landscapes (low potential and use). However, significant differences emerged for mountain LS, rated highly by experts but used minimally by residents. These insights highlight the importance of aligning expert planning with community needs to promote sustainable land use policies and reduce spatial conflicts. Full article

The Qinghai-Tibetan Plateau is one of the world’s most prominent biodiversity hotspots. Understanding the spatial patterns of ecological uniqueness in its plant communities is essential for uncovering the mechanisms of community assembly and informing effective conservation strategies. In this study, we analyzed data from 758 plots across 338 sites on the Qinghai-Tibetan Plateau. For each plot, the vegetation type was classified, and all plant species present, along with their respective abundance or coverage, were recorded in the database. To assess overall compositional variation, community β-diversity was quantified, while a plot-level approach was applied to determine the influence of local environmental conditions and community characteristics on ecological uniqueness. We used stepwise multiple regressions, variation partitioning, and structural equation modeling to identify the key drivers of spatial variation in ecological uniqueness. Our results show that (1) local contributions to β-diversity (LCBD) exhibit significant geographic variation—increasing with longitude, decreasing with latitude, and showing a unimodal trend along the elevational gradient; (2) shrubs and trees contribute more to β-diversity than herbaceous species, and LCBD is strongly linked to the proportion of rare species; and (3) community characteristics, including species richness and vegetation coverage, are the main direct drivers of ecological uniqueness, explaining 36.9% of the variance, whereas climate and soil properties exert indirect effects through their interactions. Structural equation modeling further reveals a coordinated influence of soil, climate, and community attributes on LCBD, primarily mediated through soil nutrient availability. These findings provide a theoretical basis for adaptive biodiversity management on the Qinghai-Tibetan Plateau and underscore the conservation value of regions with high ecological uniqueness. Full article

The landscapes of the Arctic seem endless. But they are also subject to anthropogenic impact, especially in urbanized and industrial ecosystems. The population of the Arctic zone of Russia is extremely urbanized, and up to 84% of the population lives in cities and industrial settlements. In this regard, we studied the background soils of forests and tundras and the soils of settlements. The main signs of the urbanogenic morphogenesis of soils associated with the transportation of material for urban construction are revealed. The peculiarities of soils of recreational, residential, and industrial zones of urbanized ecosystems are described. The questions of diversity and the classification of soils are discussed. The specificity of bulk soils used in the construction of industrial structures in the context of the initial stage of soil formation is considered. For the first time, soils and soil cover of settlements in the central and southern parts of the Yamal region are described in the context of traditional pedology. It is shown that the construction of new soils and grounds can lead to both decreases and increases in biodiversity, including the appearance of protected species. Surprisingly, the forms of urban soil formation in the Arctic are very diversified in terms of morphology, as well as in the ecological functions performed by soils. The urbanization of past decades has drastically changed the local soil cover. Full article

The aperture of the towed horizontal line array is limited and the received signal is unstable in a complex ocean environment, making it difficult to distinguish the location of the sound source. To address this challenge, this paper presents a MoELocNet (Mixture of Experts Localization Network) for deep-sea sound source localization, leveraging interference structures in range-frequency domain signals from a towed horizontal line array. Unlike traditional correlation-based methods constrained by time-varying ocean environments and low signal-to-noise ratios, the model employs multi-expert and multi-task learning to extract interference periods from single-frame data, enabling robust estimation of source range and depth. Simulation results demonstrate its superior performance in the deep-sea shadow zone, achieving a range localization error of 0.029 km and a depth error of 0.072 m. The method exhibits strong noise robustness and delivers satisfactory results across diverse deep-sea zones, with optimal performance in shadow zones and secondary effectiveness in the direct arrival zone. Full article

Ensuring the structural safety of steel trusses in escalators is critical for the reliable operation of vertical transportation systems. While manual inspection remains widely used, its dependence on human judgment leads to extended cycle times and variable defect-recognition rates, making it less reliable for identifying subtle surface imperfections. To address these limitations, a novel context-aware, multi-scale deep learning framework based on the YOLOv5 architecture is proposed, which is specifically designed for automated structural defect detection in escalator steel trusses. Firstly, a method called GIES is proposed to synthesize pseudo-multi-channel representations from single-channel grayscale images, which enhances the network’s channel-wise representation and mitigates issues arising from image noise and defocused blur. To further improve detection performance, a context enhancement pipeline is developed, consisting of a local feature module (LFM) for capturing fine-grained surface details and a global context module (GCM) for modeling large-scale structural deformations. In addition, a multi-scale feature fusion module (MSFM) is employed to effectively integrate spatial features across various resolutions, enabling the detection of defects with diverse sizes and complexities. Comprehensive testing on the NEU-DET and GC10-DET datasets reveals that the proposed method achieves 79.8% mAP on NEU-DET and 68.1% mAP on GC10-DET, outperforming the baseline YOLOv5s by 8.0% and 2.7%, respectively. Although challenges remain in identifying extremely fine defects such as crazing, the proposed approach offers improved accuracy while maintaining real-time inference speed. These results indicate the potential of the method for intelligent visual inspection in structural health monitoring and industrial safety applications. Full article

People living with HIV (PLWH) faced diverse challenges during the COVID-19 pandemic, including disruptions to care, housing instability, emotional distress, and economic hardship. This study used graph-based clustering methods to analyze pandemic-era experiences of PLWH in a national sample from the NIH’s All of Us dataset (n = 242). Across three graph configurations we identified consistent subgroups shaped by social connectedness, housing stability, emotional well-being, and engagement with preventive behaviors. Comparison with an earlier local study of PLWH in Illinois confirmed recurring patterns of vulnerability and resilience while also revealing additional national-level subgroups not observed in the smaller sample. Subgroups with strong social or institutional ties were associated with greater emotional stability and proactive engagement with COVID-19 preventive behaviors, while those facing isolation and structural hardship exhibited elevated distress and limited engagement with COVID-19 preventive measures. These findings underscore the importance of precision public health strategies that reflect the heterogeneity of PLWH and suggest that strengthening social support networks, promoting housing stability, and leveraging institutional connections may enhance pandemic preparedness and HIV care in future public health crises. Full article

To improve semantic segmentation performance for complex urban remote sensing images with multi-scale object distribution, class similarity, and small object omission, this paper proposes MFPI-Net, an encoder–decoder-based semantic segmentation network. It includes four core modules: a Swin Transformer backbone encoder, a diverse dilation rates attention shuffle decoder (DDRASD), a multi-scale convolutional feature enhancement module (MCFEM), and a cross-path residual fusion module (CPRFM). The Swin Transformer efficiently extracts multi-level global semantic features through its hierarchical structure and window attention mechanism. The DDRASD’s diverse dilation rates attention (DDRA) block combines convolutions with diverse dilation rates and channel-coordinate attention to enhance multi-scale contextual awareness, while Shuffle Block improves resolution via pixel rearrangement and avoids checkerboard artifacts. The MCFEM enhances local feature modeling through parallel multi-kernel convolutions, forming a complementary relationship with the Swin Transformer’s global perception capability. The CPRFM employs multi-branch convolutions and a residual multiplication–addition fusion mechanism to enhance interactions among multi-source features, thereby improving the recognition of small objects and similar categories. Experiments on the ISPRS Vaihingen and Potsdam datasets show that MFPI-Net outperforms mainstream methods, achieving 82.57% and 88.49% mIoU, validating its superior segmentation performance in urban remote sensing. Full article

The distribution of forest aboveground biomass density (AGBD) is a key indicator of carbon stock and ecosystem health in the Eastern Himalayas, which represents a global biodiversity hotspot that sustains diverse forest types across an elevation gradient from lowland rainforests to alpine meadows and contributes to the livelihoods of more than 200 distinct indigenous communities. This study aimed to identify the key factors influencing forest AGBD across this region by analyzing the underlying biophysical and anthropogenic drivers through machine learning (random forest). We processed AGBD data from the Global Ecosystem Dynamics Investigation (GEDI) spaceborne LiDAR and applied filtering to retain 30,257 high-quality footprints across ten ecoregions. We then analyzed the relationship between AGBD and 17 climatic, topographic, soil, and anthropogenic variables using random forest regression models. The results revealed significant spatial variability in AGBD (149.6 ± 79.5 Mg ha⁻¹) across the region. State-wise, Sikkim recorded the highest mean AGBD (218 Mg ha⁻¹) and Manipur the lowest (102.8 Mg ha⁻¹). Within individual ecoregions, the Himalayan subtropical pine forests exhibited the highest mean AGBD (245.5 Mg ha⁻¹). Topographic factors, particularly elevation and latitude, were strong determinants of biomass distribution, with AGBD increasing up to elevations of 2000 m before declining. Protected areas (PAs) consistently showed higher AGBD than unprotected forests for all ecoregions, while proximity to urban and agricultural areas resulted in lower AGBD, pointing towards negative anthropogenic impacts. Our full model explained 41% of AGBD variance across the Eastern Himalayas, with better performance in individual ecoregions like the Northeast India-Myanmar pine forests (R² = 0.59). While limited by the absence of regionally explicit stand-level forest structure data (age, stand density, species composition), our results provide valuable evidence for conservation policy development, including expansion of PAs, compensating avoided deforestation and modifications in shifting cultivation. Future research should integrate field measurements with remote sensing and use high-resolution LiDAR with locally derived allometric models to enhance biomass estimation and GEDI data validation. Full article

The widespread application of large underground water tank structures in urban areas necessitates reliable design guidelines to ensure their safety as critical infrastructure. This paper investigated the seismic response of large underground water tank structures considering fluid–structure interaction (FSI). Coupled Eulerian–Lagrangian (CEL) was employed to analyze the highly nonlinear FSI caused by intense fluid sloshing during earthquakes. The patterns of fluid sloshing amplitude observed from the finite element model were summarized based on analyses of fluid velocity, hydrodynamic stress components, and overall kinetic energy. In addition, the seismic response of the water tank structure was thoroughly assessed and compared with the simulation results of the empty tank structure. The results indicate that significant fluid sloshing occurs within the structure under seismic excitation. The amplitude of fluid sloshing increases horizontally from the center toward the edges of the structure, corresponding to higher hydrodynamic loads at the side area of the structure. By comparing the analysis results of the water tank structure with and without water, it was concluded that FSI is the primary cause of structural damage during an earthquake. The hydrodynamic loads on the roof, diversion walls, and external walls lead to significant localized damage. Full article

Localized ionization enhancements (LIEs) in altitude range corresponding to the D-region ionosphere, disrupting Very-Low-Frequency (VLF) signal propagation. This case study focuses on Lightning-induced Electron Precipitation (LEP), analyzing amplitude and phase variations in VLF signals recorded in Belgrade, Serbia, from worldwide transmitters. Due to the localized, transient nature of Energetic Electron Precipitation (EEP) events and the path-dependence of VLF responses, research relies on event-specific case studies to model reflection height and sharpness via numerical simulations. Findings show LIEs are typically under 1000 × 500 km, with varying internal structure. Accumulated case studies and corresponding data across diverse conditions contribute to a broader understanding of ionospheric dynamics and space weather effects. These findings enhance regional modeling, support aerosol–electricity climate research, and underscore the value of VLF-based ionospheric monitoring and collaboration in Europe. Full article

Background: Osteodysplastic syndromes comprise a very diverse group of clinically and genetically heterogeneous disorders characterized by defects in bone and connective tissue development, as well as in bone density. Here, we report the case of a 48-year-old female with a complex medical history characterized by bone dysplasia, hyperostosis, and partial tooth agenesis. Methods: Genetic testing was performed using WES analysis and Sanger sequencing. Molecular modeling analysis and dynamics simulation explored the impact of detected pathogenic variants. Results: The genetic analysis detected multiple pathogenic variants in genes CREB3L1, SLCO2A1, SFRP4, LRP5, and LRP6, each of which has been associated with rare osteodysplastic syndromes. The patient was homozygous for the same rare alleles associated with three of the identified autosomal recessive disorders osteogenesis imperfecta type XVI, primary hypertrophic osteoarthropathy, and metaphyseal dysplasia Pyle type. She also had a variant linked to autosomal dominant endosteal hyperostosis and a variant previously associated with increased risk of osteoporosis and bone fractures. Two of the detected variants are predicted to cause abnormal splicing, while molecular modeling and dynamics simulations analysis suggest that the other three variants probably confer altered local secondary structure and flexibility that may have functionally devastating consequences. Conclusions: Our case highlights the rare coexistence of multiple osteodysplastic syndromes in a single patient that may complicate differential diagnosis. Furthermore, this case emphasizes the necessity for early genetic investigation of such complex cases with overlying phenotypic traits, followed by genetic counseling, facilitating orchestration of clinical interventions and allowing prevention and/or prompt management of manifestations. Full article

Alzheimer’s disease (AD) involves the accumulation of amyloid-β (Aβ) plaques, whose quantification plays a central role in understanding disease progression. Automated segmentation of Aβ deposits in histopathological micrographs enables large-scale analyses but is hindered by the high cost of detailed pixel-level annotations. Weakly supervised learning offers a promising alternative by leveraging coarse or indirect labels to reduce the annotation burden. We evaluated a weakly supervised approach to segment and analyze thioflavin-S-positive parenchymal amyloid pathology in AD and age-matched brains. Our pipeline integrates three key components, each designed to operate under weak supervision. First, robust preprocessing (including retrospective multi-image illumination correction and gradient-based background estimation) was applied to enhance image fidelity and support training, as models rely more on image features. Second, class activation maps (CAMs), generated by a compact deep classifier SqueezeNet, were used to identify, and coarsely localize amyloid-rich parenchymal regions from patch-wise image labels, serving as spatial priors for subsequent refinement without requiring dense pixel-level annotations. Third, a patch-based convolutional neural network, U-Net, was trained on synthetic data generated from micrographs based on CAM-derived pseudo-labels via an extensive object-level augmentation strategy, enabling refined whole-image semantic segmentation and generalization across diverse spatial configurations. To ensure robustness and unbiased evaluation, we assessed the segmentation performance of the entire framework using patient-wise group k-fold cross-validation, explicitly modeling generalization across unseen individuals, critical in clinical scenarios. Despite relying on weak labels, the integrated pipeline achieved strong segmentation performance with an average Dice similarity coefficient (≈0.763) and Jaccard index (≈0.639), widely accepted metrics for assessing segmentation quality in medical image analysis. The resulting segmentations were also visually coherent, demonstrating that weakly supervised segmentation is a viable alternative in histopathology, where acquiring dense annotations is prohibitively labor-intensive and time-consuming. Subsequent morphometric analyses on automatically segmented Aβ deposits revealed size-, structural complexity-, and global geometry-related differences across brain regions and cognitive status. These findings confirm that deposit architecture exhibits region-specific patterns and reflects underlying neurodegenerative processes, thereby highlighting the biological relevance and practical applicability of the proposed image-processing pipeline for morphometric analysis. Full article

The rapid evolution of SARS-CoV-2 has underscored the need for a detailed understanding of antibody binding mechanisms to combat immune evasion by emerging variants. In this study, we investigated the interactions between Class I neutralizing antibodies—BD55-1205, BD-604, OMI-42, P5S-1H1, and P5S-2B10—and the receptor-binding domain (RBD) of the SARS-CoV-2 spike protein using multiscale modeling, which combined molecular simulations with the ensemble-based mutational scanning of the binding interfaces and binding free energy computations. A central theme emerging from this work is that the unique binding strength and resilience to immune escape of the BD55-1205 antibody are determined by leveraging a broad epitope footprint and distributed hotspot architecture, additionally supported by backbone-mediated specific interactions, which are less sensitive to amino acid substitutions and together enable exceptional tolerance to mutational escape. In contrast, BD-604 and OMI-42 exhibit localized binding modes with strong dependence on side-chain interactions, rendering them particularly vulnerable to escape mutations at K417N, L455M, F456L and A475V. Similarly, P5S-1H1 and P5S-2B10 display intermediate behavior—effective in some contexts but increasingly susceptible to antigenic drift due to narrower epitope coverage and concentrated hotspots. Our computational predictions show strong agreement with experimental deep mutational scanning data, validating the accuracy of the models and reinforcing the value of binding hotspot mapping in predicting antibody vulnerability. This work highlights that neutralization breadth and durability are not solely dictated by epitope location, but also by how binding energy is distributed across the interface. The results provide atomistic insight into mechanisms driving resilience to immune escape for broadly neutralizing antibodies targeting the ACE2 binding interface—which stems from cumulative effects of structural diversity in binding contacts, redundancy in interaction patterns and reduced vulnerability to mutation-prone positions. Full article

The germin-like protein (GLP) family plays vital roles for plant growth, stress adaptation, and defense; however, its evolutionary dynamics and functional diversity in halophytes remain poorly characterized. Here, we present the genome-wide analysis of the GLP family in the halophytic forage alkaligrass (Puccinellia tenuiflora), which identified 54 PutGLPs with a significant expansion compared to other plant species. Phylogenetic analysis revealed monocot-specific clustering, with 41.5% of PutGLPs densely localized to chromosome 7, suggesting tandem duplication as a key driver of family expansion. Collinearity analysis confirmed evolutionary conservation with monocot GLPs. Integrated gene structure and motif analysis revealed conserved cupin domains (BoxB and BoxC). Promoter cis-acting elements analysis revealed stress-responsive architectures dominated by ABRE, STRE, and G-box motifs. Tissue-/organ-specific expression profiling identified root- and flower-enriched PutGLPs, implying specialized roles in stress adaptation. Dynamic expression patterns under salt-dominated stresses revealed distinct regulatory pathways governing ionic and alkaline stress responses. Functional characterization of PutGLP37 demonstrated its cell wall localization, dual superoxide dismutase (SOD) and oxalate oxidase (OXO) enzymatic activities, and salt stress tolerance in Escherichia coli, yeast (Saccharomyces cerevisiae INVSc1), and transgenic Arabidopsis. This study provides critical insights into the evolutionary innovation and stress adaptive roles of GLPs in halophytes. Full article