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Keywords = leaving group chemistry

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13 pages, 2115 KiB  
Article
Residual-Free Micro–Nano Titanium Surfaces via Titanium Blasting and Single Acid-Etching: A Cleaner Alternative
by Artiom Lijnev, José Eduardo Maté Sánchez de Val, Jeevithan Elango, Carlos Pérez-Albacete Martínez, José Manuel Granero Marín, Antonio Scarano and Sergio Alexandre Gehrke
Bioengineering 2025, 12(7), 735; https://doi.org/10.3390/bioengineering12070735 - 5 Jul 2025
Viewed by 648
Abstract
Background: Traditional sandblasted large-grit acid-etched (SLA) surface treatments frequently utilize alumina (Al2O3) blasting, which may leave residual particles embedded in implant surfaces, potentially compromising biocompatibility and osseointegration. This study investigates a contamination-free alternative: titanium dioxide particle (TiO2) [...] Read more.
Background: Traditional sandblasted large-grit acid-etched (SLA) surface treatments frequently utilize alumina (Al2O3) blasting, which may leave residual particles embedded in implant surfaces, potentially compromising biocompatibility and osseointegration. This study investigates a contamination-free alternative: titanium dioxide particle (TiO2) blasting followed by hydrochloric acid (HCl) etching, aimed at generating a cleaner, hierarchical micro–nano-textured surface. Methods: Grade IV titanium disks were treated either with TiO2 sandblasting alone or with an additional HCl etching step. Surfaces were analyzed via atomic force microscopy (AFM), scanning electron microscopy (SEM), contact angle measurements, and profilometry. hFOB osteoblasts were cultured to assess adhesion, proliferation, metabolic activity, and morphology. Results: The combination treatment produced a more homogeneous micro–nano structure with significantly increased roughness and a cleaner surface chemistry. Osteoblast proliferation and metabolic activity were notably improved in the TiO2 and HCl group. SEM imaging showed a more organized cytoskeletal structure and pronounced filopodia at 72 h. Conclusions: Titanium blasting combined with HCl etching yields a cost-effective, contamination-free surface modification with promising early-stage cellular responses. This approach represents a safer and effective alternative to conventional SLA treatment. Full article
(This article belongs to the Special Issue Periodontics and Implant Dentistry)
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25 pages, 4422 KiB  
Article
Green Synthesis of Zinc Oxide Nanoparticles with Psidium cattleianum Leaves Extracts as Reducing Agent: Influence of Extraction Method on Physicochemical and Biological Activities
by Christian Israel Padilla-Hernández, Jorge Manuel Silva-Jara, Martha Reyes-Becerril, Abril Fonseca-García, Luis Miguel Anaya-Esparza, Paulo Roberto Orozco-Sánchez, Juan José Rivera-Valdés, Mireille López-Orozco, Carlos Arnulfo Velázquez-Carriles and María Esther Macías-Rodríguez
Physchem 2025, 5(2), 17; https://doi.org/10.3390/physchem5020017 - 26 Apr 2025
Cited by 1 | Viewed by 3081
Abstract
This work successfully synthesized green zinc oxide nanoparticles using extracts from strawberry guava leaves (Psidium cattleianum Sabine). Additionally, the reducing effect of the antioxidant extracts obtained through traditional techniques, such as infusion and maceration, was studied and compared against an emerging unconventional [...] Read more.
This work successfully synthesized green zinc oxide nanoparticles using extracts from strawberry guava leaves (Psidium cattleianum Sabine). Additionally, the reducing effect of the antioxidant extracts obtained through traditional techniques, such as infusion and maceration, was studied and compared against an emerging unconventional technology like ultrasound assisted extraction. Regarding the physical and chemical characteristics, it was found that all three systems were confined within a wavelength range of 357 to 370 nm (UV-vis) and sizes from 60 to 140 nm for the ultrasound-assisted nanoparticles (SEM), corroborated with DLS (134 ± 60 nm). Through X-ray diffraction, the hexagonal wurtzite structure was elucidated, and it was observed that ultrasound favored a higher percentage of crystallinity (98%) compared to the infusion (84%) and maceration (72%). This could be correlated with different functional groups via FTIR and with thermal events associated with thermogravimetric curves, where the total biomass weight loss was lower for nanoparticles using ultrasound extract (6.25%), followed by maceration (15.55%) and infusion (18.01%) extracts. Furthermore, these nanostructures were evaluated against clinically relevant pathogens, including Salmonella enteritidis, Staphylococcus aureus, Escherichia coli O157:H7, and Pseudomonas aeruginosa, assessing bacterial growth inhibition using the microdilution technique, and achieving inhibitions of 75%. Biofilm activity was evaluated through Congo red and crystal violet assays, where ultrasound-derived NPs proved to be good inhibitors for all pathogens. Finally, the toxicity of the nanoparticles was analyzed against peripheral blood leukocytes from goats as well as on the 3 T3-L1 cell line used in anti-obesity assays; the nanoparticles proved to be suitable in all concentrations reaching around 100% cell viability, positioning them as good candidates for diverse industrial applications that align with the principles of green chemistry towards a circular economy. Full article
(This article belongs to the Section Biophysical Chemistry)
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22 pages, 638 KiB  
Article
Exploring Potential Factors Affecting Reading Comprehension in EAL Learners: A Preliminary Corpus-Based Analysis
by Gavin Brooks, Jon Clenton and Simon Fraser
Languages 2025, 10(2), 30; https://doi.org/10.3390/languages10020030 - 10 Feb 2025
Viewed by 2221
Abstract
This article presents a study examining the vocabulary knowledge of English as an additional language (EAL) learners in two international schools in Japan in relation to the vocabulary profiles of the textbooks they are required to use in the classrooms. The vocabulary knowledge [...] Read more.
This article presents a study examining the vocabulary knowledge of English as an additional language (EAL) learners in two international schools in Japan in relation to the vocabulary profiles of the textbooks they are required to use in the classrooms. The vocabulary knowledge of 139 participants from two international schools was assessed using either the New Vocabulary Levels Test (NVLT) or the Updated Vocabulary Levels Test (UVLT). These results were compared to a 15 million-word corpus compiled from representative subject-specific textbooks to estimate the vocabulary coverage participants are likely to achieve. The findings revealed that EAL learners consistently scored lower than a combined group of their first-language English (FLE) and proficient L2 (PL2) peers, with fewer than 25% of EAL learners mastering the AWL before Grade 12. Furthermore, even the most frequent 5000-word bands provided only 91–93% coverage for subjects like biology and chemistry, leaving many EAL learners struggling to comprehend these texts. This analysis highlights the potential difficulties EAL learners may face in understanding the textbooks that are being used in EAL classrooms, underscoring the need for better vocabulary scaffolding and support for such learners in the international school context. Full article
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9 pages, 4001 KiB  
Article
Hydrolysis Reactions of p-Nitrophenyl Trifluoroacetate and S-Ethyl Trifluorothioacetate
by Jack B. Suggs and Joshua J. Melko
Molecules 2025, 30(2), 268; https://doi.org/10.3390/molecules30020268 - 11 Jan 2025
Viewed by 1138
Abstract
The formation of water structures can provide significant benefits in organic reactions, stabilizing charge and lowering activation energies. Hydrolysis reactions will frequently rely on water networks to accomplish these goals. Here, we used computational chemistry and experimental kinetics to investigate a model thioester [...] Read more.
The formation of water structures can provide significant benefits in organic reactions, stabilizing charge and lowering activation energies. Hydrolysis reactions will frequently rely on water networks to accomplish these goals. Here, we used computational chemistry and experimental kinetics to investigate a model thioester molecule S-ethyl trifluorothioacetate, and extended work on a previously characterized ester p-nitrophenyl trifluoroacetate. We found that the rate-determining steps in these reactions are heavily influenced by the nature of the leaving group. The hydrolysis of S-ethyl trifluorothioacetate was much slower than p-nitrophenyl trifluoroacetate for this reason. We explored differences in the reaction orders with respect to water and examined details of calculated potential energy surfaces of these hydrolysis reactions, highlighting the roles of solvation effects and transition state structures. Full article
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28 pages, 1604 KiB  
Review
The Metabolomic Footprint of Liver Fibrosis
by Diren Beyoğlu, Yury V. Popov and Jeffrey R. Idle
Cells 2024, 13(16), 1333; https://doi.org/10.3390/cells13161333 - 11 Aug 2024
Cited by 4 | Viewed by 3806
Abstract
Both experimental and clinical liver fibrosis leave a metabolic footprint that can be uncovered and defined using metabolomic approaches. Metabolomics combines pattern recognition algorithms with analytical chemistry, in particular, 1H and 13C nuclear magnetic resonance spectroscopy (NMR), gas chromatography–mass spectrometry (GC–MS) [...] Read more.
Both experimental and clinical liver fibrosis leave a metabolic footprint that can be uncovered and defined using metabolomic approaches. Metabolomics combines pattern recognition algorithms with analytical chemistry, in particular, 1H and 13C nuclear magnetic resonance spectroscopy (NMR), gas chromatography–mass spectrometry (GC–MS) and various liquid chromatography–mass spectrometry (LC–MS) platforms. The analysis of liver fibrosis by each of these methodologies is reviewed separately. Surprisingly, there was little general agreement between studies within each of these three groups and also between groups. The metabolomic footprint determined by NMR (two or more hits between studies) comprised elevated lactate, acetate, choline, 3-hydroxybutyrate, glucose, histidine, methionine, glutamine, phenylalanine, tyrosine and citrate. For GC–MS, succinate, fumarate, malate, ascorbate, glutamate, glycine, serine and, in agreement with NMR, glutamine, phenylalanine, tyrosine and citrate were delineated. For LC–MS, only β-muricholic acid, tryptophan, acylcarnitine, p-cresol, valine and, in agreement with NMR, phosphocholine were identified. The metabolomic footprint of liver fibrosis was upregulated as regards glutamine, phenylalanine, tyrosine, citrate and phosphocholine. Several investigators employed traditional Chinese medicine (TCM) treatments to reverse experimental liver fibrosis, and a commentary is given on the chemical constituents that may possess fibrolytic activity. It is proposed that molecular docking procedures using these TCM constituents may lead to novel therapies for liver fibrosis affecting at least one-in-twenty persons globally, for which there is currently no pharmaceutical cure. This in-depth review summarizes the relevant literature on metabolomics and its implications in addressing the clinical problem of liver fibrosis, cirrhosis and its sequelae. Full article
(This article belongs to the Section Cellular Metabolism)
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24 pages, 6624 KiB  
Review
Bond Formation at C8 in the Nucleoside and Nucleotide Purine Scaffold: An Informative Selection
by Kjell Undheim
Molecules 2024, 29(8), 1815; https://doi.org/10.3390/molecules29081815 - 17 Apr 2024
Viewed by 2165
Abstract
This paper presents methods for the introduction and exchange of substituents in a nucleobase and its nucleosides and nucleotides with emphasis on the C8-position in the purine skeleton. The nucleobase is open for electrophilic and nucleophilic chemistry. The nucleophilic chemistry consists mainly of [...] Read more.
This paper presents methods for the introduction and exchange of substituents in a nucleobase and its nucleosides and nucleotides with emphasis on the C8-position in the purine skeleton. The nucleobase is open for electrophilic and nucleophilic chemistry. The nucleophilic chemistry consists mainly of displacement reactions when the C8-substituent is a good leaving group such as a halogen atom. The heteroatom in amines, sulfides, or oxides is a good nucleophile. Halides are good reaction partners. Metal-promoted cross-coupling reactions are important for carbylations. Direct oxidative metalation reactions using sterically hindered metal amides offer chemo- and regio-selectivity besides functional tolerance and simplicity. The carbon site is highly nucleophilic after metalation and adds electrophiles resulting in chemical bond formation. Conditions for metal-assisted reactions are described for nucleobases and their glycosides. Full article
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12 pages, 4355 KiB  
Article
The Impact of Harvesting Mechanization on Oolong Tea Quality
by Junling Zhou, Shuilian Gao, Zhenghua Du, Tongda Xu, Chao Zheng and Ying Liu
Plants 2024, 13(4), 552; https://doi.org/10.3390/plants13040552 - 18 Feb 2024
Cited by 3 | Viewed by 3010
Abstract
Mechanization is the inevitable future of tea harvesting, but its impact on tea chemistry and quality remains uncertain. Our study examines untargeted metabolomic data from 185 oolong tea products (Tieguanyin) made from leaves harvested by hand or machine based on UPLC-QToF-MS analysis. The [...] Read more.
Mechanization is the inevitable future of tea harvesting, but its impact on tea chemistry and quality remains uncertain. Our study examines untargeted metabolomic data from 185 oolong tea products (Tieguanyin) made from leaves harvested by hand or machine based on UPLC-QToF-MS analysis. The data revealed a minimum 50% loss for over half of the chemicals in the machine-harvested group, including catechins, theaflavin, gallic acid, chlorogenic acid, and kaempferol-3-gluocside. Integrating sensory evaluation, OPLS-DA identified the six most important metabolites as significant contributors to sensory decline caused by harvesting mechanization. Furthermore, our research validates the possibility of using DD-SIMCA modelling with untargeted metabolomic data for distinguishing handpicked from machine-harvested tea products. The model was able to achieve 93% accuracy. This study provides crucial insights into the chemical and sensory shifts during mechanization, along with tools to manage and monitor these changes. Full article
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25 pages, 4751 KiB  
Article
Cellulose Functionalization Using N-Heterocyclic-Based Leaving Group Chemistry
by Arvind Negi and Ali R. Tehrani-Bagha
Polymers 2024, 16(1), 149; https://doi.org/10.3390/polym16010149 - 3 Jan 2024
Cited by 7 | Viewed by 3442
Abstract
There has been continuous interest in developing novel activators that facilitate the functionalization of cellulosic materials. In this paper, we developed a strategy in which trisubstituted triazinium salts act as cellulose preactivators. As leaving groups, these triazinium salts utilize N-heterocycles (pyridine, imidazole, [...] Read more.
There has been continuous interest in developing novel activators that facilitate the functionalization of cellulosic materials. In this paper, we developed a strategy in which trisubstituted triazinium salts act as cellulose preactivators. As leaving groups, these triazinium salts utilize N-heterocycles (pyridine, imidazole, and nicotinic acid). Initially, we optimized the synthetic route for developing these novel cellulose preactivators (triazinium salts), whose structures were confirmed using NMR spectroscopy. The surface zeta potential of cellulose changed from a negative value to a positive one after preactivation due to the cationic nature of these preactivators. To enhance the scope of the study, we functionalized the cellulose-preactivated materials with a series of amine- or hydroxy-containing aliphatic and aromatic hydrocarbons, nucleophilic amino acids (cysteine), colorants (2-aminoanthraquinone and 2-amino-3-methyl-anthraquinone), and biopolymer (zein protein). The treated samples were analyzed using FTIR, time-gated Raman spectroscopy, and reflection spectroscopy, and the success of the functionalization process was validated. To widen the scope of such chemistries, we synthesized four reactive agents containing N-heterocyclic-based leaving groups (pyridine and nicotinic acid) and successfully functionalized cellulose with them in one step. The proposed single- and two-step functionalization approaches will provide opportunities for chemically linking various chemical compounds to cellulose for different applications. Full article
(This article belongs to the Special Issue Advances in Natural Cellulose)
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25 pages, 13910 KiB  
Article
Optimization of the Flavonoid Extraction Process from the Stem and Leaves of Epimedium Brevicornum and Its Effects on Cyclophosphamide-Induced Renal Injury
by Meiling Shi, Hongyan Pei, Li Sun, Weijia Chen, Ying Zong, Yan Zhao, Rui Du and Zhongmei He
Molecules 2024, 29(1), 207; https://doi.org/10.3390/molecules29010207 - 29 Dec 2023
Cited by 3 | Viewed by 2510
Abstract
Cyclophosphamide (CTX) is a broad-spectrum alkylated antitumor drug. It is clinically used in the treatment of a variety of cancers, and renal toxicity is one of the adverse reactions after long-term or repeated use, which not only limits the therapeutic effect of CTX, [...] Read more.
Cyclophosphamide (CTX) is a broad-spectrum alkylated antitumor drug. It is clinically used in the treatment of a variety of cancers, and renal toxicity is one of the adverse reactions after long-term or repeated use, which not only limits the therapeutic effect of CTX, but also increases the probability of kidney lesions. The total flavonoids of Epimedium stem and leaf (EBF) and Icariin (ICA) are the main medicinal components of Epimedium, and ICA is one of the main active substances in EBF. Modern pharmacological studies have shown that EBF has a variety of biological activities such as improving osteoporosis, promoting cell proliferation, antioxidant and anti-inflammatory properties, etc. However, few studies have been conducted on the nephrotoxicity caused by optimized CTX extraction, and protein-ligand binding has not been involved. This research, through the response surface optimization extraction of EBF, obtained the best extraction conditions: ethanol concentration was 60%, solid-liquid ratio of 25:1, ultrasonic time was about 25 min. Combined with mass spectrometry (MS) analysis, EBF contained ICA, ichopidin A, ichopidin B, ichopidin C, and other components. In this study, we adopted a computational chemistry method called molecular docking, and the results show that Icariin was well bound to the antioxidant target proteins KEAP1 and NRF2, and the anti-inflammatory target proteins COX-2 and NF-κB, with free binding energies of −9.8 kcal/mol, −11.0 kcal/mol, −10.0 kcal/mol, and −8.1 kcal/mol, respectively. To study the protective effect of EBF on the nephrotoxicity of CTX, 40 male Kunming mice (weight 18 ± 22) were injected with CTX (80 mg/kg) for 7 days to establish the nephrotoxicity model and were treated with EBF (50 mg/kg, 100 mg/kg) for 8 days by gavage. After CTX administration, MDA, BUN, Cre, and IL-6 levels in serum increased, MDA increased in kidney, GPT/ALT and IL-6 increased in liver, and IL-6 increased in spleen and was significant ((p < 0.05 or (p < 0.01)). Histopathological observation showed that renal cortex glomerular atrophy necrosis, medullary inflammatory cell infiltration, and other lesions. After administration of EBF, CTX-induced increase in serum level of related indexes was reduced, and MDA in kidney, GPT/ALT and IL-6 in liver, and IL-6 in spleen were increased. At the same time, histopathological findings showed that the necrosis of medullary and corticorenal tubular epithelium was relieved at EBF (50 mg/kg) dose compared with the CTX group, and the glomerular tubular necrosis gradually became normal at EBF (100 mg/kg) dose. Western blot analysis of Keap1 and Nrf2 protein expression in kidney tissue showed that compared with model CTX group, the drug administration group could alleviate the high expression of Keap1 protein and low expression of Nrf2 protein in kidney tissue. Conclusion: After the optimal extraction of total flavonoids from the stems and leaves of Epimedium, the molecular docking technique combined with animal experiments suggested that the effective component of the total flavonoids of Epimedium might activate the Keap1-Nrf2 signaling pathway after treatment to reduce the inflammation and oxidative stress of kidney tissue, so as to reduce kidney damage and improve kidney function. Therefore, EBF may become a new natural protective agent for CTX chemotherapy in the future. Full article
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20 pages, 5283 KiB  
Article
Expanding the Scope of an Amphoteric Condensed Tannin, Tanfloc, for Antibacterial Coatings
by Somayeh Baghersad, Liszt Y. C. Madruga, Alessandro F. Martins, Ketul C. Popat and Matt J. Kipper
J. Funct. Biomater. 2023, 14(11), 554; https://doi.org/10.3390/jfb14110554 - 18 Nov 2023
Cited by 7 | Viewed by 3397
Abstract
Bacterial infections are a common mode of failure for medical implants. This study aims to develop antibacterial polyelectrolyte multilayer (PEM) coatings that contain a plant-derived condensed tannin polymer (Tanfloc, TAN) with inherent antimicrobial activity. Tanfloc is amphoteric, and herein we show that it [...] Read more.
Bacterial infections are a common mode of failure for medical implants. This study aims to develop antibacterial polyelectrolyte multilayer (PEM) coatings that contain a plant-derived condensed tannin polymer (Tanfloc, TAN) with inherent antimicrobial activity. Tanfloc is amphoteric, and herein we show that it can be used as either a polyanion or a polycation in PEMs, thereby expanding the possibility of its use in PEM coatings. PEMs are ordinarily formed using a polycation and a polyanion, in which the functional (ionic) groups of the two polymers are complexed to each other. However, using the amphoteric polymer Tanfloc with weakly basic amine and weakly acidic catechol and pyrogallol groups enables PEM formation using only one or the other of its functional groups, leaving the other functional group available to impart antibacterial activity. This work demonstrates Tanfloc-containing PEMs using multiple counter-polyelectrolytes including three polyanionic glycosaminoglycans of varying charge density, and the polycations N,N,N-trimethyl chitosan and polyethyleneimine. The layer-by-layer (LbL) assembly of PEMs was monitored using in situ Fourier-transform surface plasmon resonance (FT-SPR), confirming a stable LbL assembly. X-ray photoelectron spectroscopy (XPS) was used to evaluate surface chemistry, and atomic force microscopy (AFM) was used to determine the surface roughness. The LDH release levels from cells cultured on the Tanfloc-containing PEMs were not statistically different from those on the negative control (p > 0.05), confirming their non-cytotoxicity, while exhibiting remarkable antiadhesive and bactericidal properties against Pseudomonas aeruginosa (P. aeruginosa) and Staphylococcus aureus (S. aureus), respectively. The antibacterial effects were attributed to electrostatic interactions and Tanfloc’s polyphenolic nature. This work underscores the potential of Tanfloc as a versatile biomaterial for combating infections on surfaces. Full article
(This article belongs to the Special Issue Tannins and Other Polyphenols as Functional Biomaterials)
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22 pages, 2167 KiB  
Review
Perspectives on Saponins: Food Functionality and Applications
by Yakindra Prasad Timilsena, Arissara Phosanam and Regine Stockmann
Int. J. Mol. Sci. 2023, 24(17), 13538; https://doi.org/10.3390/ijms241713538 - 31 Aug 2023
Cited by 88 | Viewed by 13318
Abstract
Saponins are a diverse group of naturally occurring plant secondary metabolites present in a wide range of foods ranging from grains, pulses, and green leaves to sea creatures. They consist of a hydrophilic sugar moiety linked to a lipophilic aglycone, resulting in an [...] Read more.
Saponins are a diverse group of naturally occurring plant secondary metabolites present in a wide range of foods ranging from grains, pulses, and green leaves to sea creatures. They consist of a hydrophilic sugar moiety linked to a lipophilic aglycone, resulting in an amphiphilic nature and unique functional properties. Their amphiphilic structures enable saponins to exhibit surface-active properties, resulting in stable foams and complexes with various molecules. In the context of food applications, saponins are utilized as natural emulsifiers, foaming agents, and stabilizers. They contribute to texture and stability in food products and have potential health benefits, including cholesterol-lowering and anticancer effects. Saponins possess additional bioactivities that make them valuable in the pharmaceutical industry as anti-inflammatory, antimicrobial, antiviral, and antiparasitic agents to name a few. Saponins can demonstrate cytotoxic activity against cancer cell lines and can also act as adjuvants, enhancing the immune response to vaccines. Their ability to form stable complexes with drugs further expands their potential in drug delivery systems. However, challenges such as bitterness, cytotoxicity, and instability under certain conditions need to be addressed for effective utilization of saponins in foods and related applications. In this paper, we have reviewed the chemistry, functionality, and application aspects of saponins from various plant sources, and have summarized the regulatory aspects of the food-based application of quillaja saponins. Further research to explore the full potential of saponins in improving food quality and human health has been suggested. It is expected that this article will be a useful resource for researchers in food, feed, pharmaceuticals, and material science. Full article
(This article belongs to the Special Issue Bioactives in Fruit and Vegetables)
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13 pages, 2740 KiB  
Article
Effects of Methyl Substitution and Leaving Group on E2/SN2 Competition for Reactions of F with RY (R = CH3, C2H5, iC3H7, tC4H9; Y = Cl, I)
by Wenqing Zhen, Siwei Zhao, Gang Fu, Hongyi Wang, Jianmin Sun, Li Yang and Jiaxu Zhang
Molecules 2023, 28(17), 6269; https://doi.org/10.3390/molecules28176269 - 27 Aug 2023
Cited by 4 | Viewed by 2345
Abstract
The competition between base-induced elimination (E2) and bimolecular nucleophilic substitution (SN2) is of significant importance in organic chemistry and is influenced by many factors. The electronic structure calculations for the gas-phase reactions of F + RY (R = CH3 [...] Read more.
The competition between base-induced elimination (E2) and bimolecular nucleophilic substitution (SN2) is of significant importance in organic chemistry and is influenced by many factors. The electronic structure calculations for the gas-phase reactions of F + RY (R = CH3, C2H5, iC3H7, tC4H9, and Y = Cl, I) are executed at the MP2 level with aug-cc-pVDZ or ECP/d basis set to investigate the α-methyl substitution effect. The variation in barrier height, reaction enthalpy, and competition of SN2/E2 as a function of methyl-substitution and leaving group ability has been emphasized. And the nature of these rules has been explored. As the degree of methyl substitution on α-carbon increases, the E2 channel becomes more competitive and dominant with R varying from C2H5, iC3H7, to tC4H9. Energy decomposition analysis offers new insights into the competition between E2 and SN2 processes, which suggests that the drop in interaction energy with an increasing degree of substitution cannot compensate for the rapid growth of preparation energy, leading to a rapid increase in the SN2 energy barrier. By altering the leaving group from Cl to I, the barriers of both SN2 and E2 monotonically decrease, and, with the increased number of substituents, they reduce more dramatically, which is attributed to the looser transition state structures with the stronger leaving group ability. Interestingly, ∆E0 exhibits a positive linear correlation with reaction enthalpy (∆H) and halogen electronegativity. With the added number of substituents, the differences in ∆E0 and ∆H between Y = Cl and I likewise exhibit good linearity. Full article
(This article belongs to the Special Issue Exclusive Feature Papers in Physical Chemistry)
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10 pages, 1581 KiB  
Article
Polyethylene Glycol-Mediated Directional Conjugation of Biological Molecules for Enhanced Immunoassays at the Point-of-Care
by Dheerendranath Battalapalli, Purbali Chakraborty, Disha Jain, Stephen K. Obaro, Umut A. Gurkan, Robert A. Bonomo and Mohamed S. Draz
Polymers 2023, 15(15), 3316; https://doi.org/10.3390/polym15153316 - 5 Aug 2023
Cited by 1 | Viewed by 3206
Abstract
Rapid and reliable point-of-care (POC) diagnostic tests can have a significant impact on global health. One of the most common approaches for developing POC systems is the use of target-specific biomolecules. However, the conjugation of biomolecules can result in decreased activity, which may [...] Read more.
Rapid and reliable point-of-care (POC) diagnostic tests can have a significant impact on global health. One of the most common approaches for developing POC systems is the use of target-specific biomolecules. However, the conjugation of biomolecules can result in decreased activity, which may compromise the analytical performance and accuracy of the developed systems. To overcome this challenge, we present a polymer-based cross-linking protocol for controlled and directed conjugation of biological molecules. Our protocol utilizes a bifunctional thiol-polyethylene glycol (PEG)-hydrazide polymer to enable site-directed conjugation of IgG antibodies to the surface of screen-printed metal electrodes. The metal surface of the electrodes is first modified with thiolated PEG molecules, leaving the hydrazide groups available to react with the aldehyde group in the Fc fragments of the oxidized IgG antibodies. Using anti-Klebsiella pneumoniae carbapenemase-2 (KPC-2) antibody as a model antibody used for antimicrobial resistance (AMR) testing, our results demonstrate a ~10-fold increase in antibody coupling compared with the standard N-hydroxysuccinimide (NHS)-based conjugation chemistry and effective capture (>94%) of the target KPC-2 enzyme antigen on the surface of modified electrodes. This straightforward and easy-to-perform strategy of site-directed antibody conjugation can be engineered for coupling other protein- and non-protein-based biological molecules commonly used in POC testing and development, thus enhancing the potential for improved diagnostic accuracy and performance. Full article
(This article belongs to the Special Issue Advanced Polymeric Materials for Pharmaceutical Applications IV)
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16 pages, 2864 KiB  
Article
Antioxidant Activities, Anticancer Activity, Physico-Chemistry Characteristics, and Acute Toxicity of Alginate/Lignin Polymer
by Nguyen Xuan Hoan, Le Thi Hong Anh, Hoang Thai Ha and Dang Xuan Cuong
Molecules 2023, 28(13), 5181; https://doi.org/10.3390/molecules28135181 - 3 Jul 2023
Cited by 10 | Viewed by 3092
Abstract
Alginate/lignin is a synthetic polymer rich in biological activity and is of great interest. Alginate is extracted from seaweed and lignin is extracted from corn stalks and leaves. In this paper, antioxidant activities of alginate/lignin were evaluated, such as total antioxidant activity, reducing [...] Read more.
Alginate/lignin is a synthetic polymer rich in biological activity and is of great interest. Alginate is extracted from seaweed and lignin is extracted from corn stalks and leaves. In this paper, antioxidant activities of alginate/lignin were evaluated, such as total antioxidant activity, reducing power activity, DPPH free radical scavenging activity, and α-glucosidase inhibition activity. Anticancer activity was evaluated in three cell lines (Hep G2, MCF-7, and NCI H460) and fibroblast. Physico-chemistry characteristics of alginate/lignin were determined through FTIR, DSC, SEM_EDS, SEM_EDS mapping, XRD, XRF, and 1H-NMR. The acute toxicity of alginate/lignin was studied on Swiss albino mice. The results demonstrated that alginate/lignin possessed antioxidant activity, such as the total antioxidant activity, and reducing power activity, especially the α-glucosidase inhibition activity, and had no free radical scavenging activity. Alginate/lignin was not typical in cancer cell lines. Alginate/lignin existed in a thermally stable and regular spherical shape in the investigated thermal region. Six metals, three non-metals, and nineteen oxides were detected in alginate/lignin. Some specific functional groups of alginate and lignin did not exist in alginate/lignin crystal. Elements, such as C, O, Na, and S were popular in the alginate/lignin structure. LD0 and LD100 of alginate/lignin in mice were 3.91 g/kg and 9.77 g/kg, respectively. Alginate/lignin has potential for applications in pharmaceutical materials, functional foods, and supporting diabetes treatment. Full article
(This article belongs to the Section Applied Chemistry)
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21 pages, 2171 KiB  
Article
Molecular and Phytochemical Characterizations of Cichorium intybus L. in Diverse Ecogeographical Regions of Kashmir Himalaya
by Bisma Malik, Fayaz Ahmad Dar, Tanveer Bilal Pirzadah, Ali Zari, Talal A. Zari, Hesham F. Alharby, Khalid Rehman Hakeem and Reiaz Ul Rehman
Appl. Sci. 2022, 12(23), 12061; https://doi.org/10.3390/app122312061 - 25 Nov 2022
Cited by 3 | Viewed by 2167
Abstract
Cichorium intybus L. (chicory) is an important medicinal plant with significant economic potential and has recently gained rapid momentum in the functional food sector. In the present study, soil chemistry, phytochemical, and molecular diversity were assessed for 50 accessions of chicory collected from [...] Read more.
Cichorium intybus L. (chicory) is an important medicinal plant with significant economic potential and has recently gained rapid momentum in the functional food sector. In the present study, soil chemistry, phytochemical, and molecular diversity were assessed for 50 accessions of chicory collected from diverse agro-climatic zones. In total, 64 common metabolites were identified from the leaves of 7 chicory accessions collected from different altitudes and among them, the predominant metabolites included methyl commate B (6.3–10.14%), gamma sitosterol (2.79–9.3%), and 9, 12, 15-octadecatrienoic-acid (2.55–8.42%). Three terpenoid compounds, viz., betulin, kolavelool and betulinaldehyde, were observed at high altitudes (1790, 1901, and 2172 m) and not observed at low altitudes. Among these compounds, betulin had the highest concentration with an average value of 23.53% followed by kolavelool with 7.37% and betulinaldehyde with 7.21%. For molecular diversity analysis, 12 ISSR primers were selected for PCR amplification and 86 bands were generated with an overall polymorphism percentage of 67.44%. The observed Nei’s genetic diversity (H) and Shannon’s information indices (I) were highest for the Pulwama (CIN-PU) group of accessions (H = 0.222 ± 0.018; I = 0.343 ± 0.027) and lowest for the Baramulla (CIN-BM) group of accessions (H = 0.115 ± 0.019; I = 0.173 ± 0.028). The Analysis of Molecular Variance (AMOVA) analysis revealed 56% variation existing within the groups and 44% among the groups of chicory accessions. This study shows that chicory populations vary considerably in terms of their molecular and phytochemical composition as a function of their geographic location. Furthermore, this study demonstrates that chicory phytochemical and molecular diversity are significantly influenced by altitude, soil chemistry, and growing conditions. Using metabolomics and altitudinal variation, cluster analysis showed that geographic origin was correlated with diversity patterns. Full article
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