Search Results (169)

The proglacial lakes of the Qinghai-Xizang Plateau serve as natural laboratories for studying microbial adaptation to extreme environments. However, research on the composition and functional characteristics of microorganisms in these settings remains limited. In this study, three typical high-altitude proglacial lakes in southern Xizang (Qudengnima proglacial lake, Gangbugou proglacial lake, and Qiangyong proglacial lake) were selected as research subjects. Bacterial community structure, diversity in the water and sediment of these lakes were analyzed using 16S rRNA sequencing. The results showed that Pseudomonadota, Actinomycetota, and Bacteroidota were highly abundant across all samples. The relative abundances of Cyanobacteriota and Acidobacteriota, however, exhibited distinct habitat preferences: Cyanobacteriota was enriched in the water, whereas Acidobacteriota was predominantly found in sediment. Alpha diversity analysis showed that both species diversity and richness in Qiangyong proglacial lake were significantly higher than those in the other proglacial lakes, and within the same lake, both diversity and richness in sediment were higher than in the water. Beta diversity analysis indicated that the bacterial community structures in sediment were similar across different proglacial lakes, whereas those in water varied considerably among the lakes. LEfSe analysis identified 94 biomarkers that exhibited significant differences among the different proglacial lake environments at an LDA score threshold of 4. Redundancy analysis revealed that pH, total phosphorus, and ammonium nitrogen were the physicochemical factors significantly influencing the bacterial community structure in the water, while total carbon was the key driver for the community in sediments. This study preliminarily characterized the bacterial community structure and diversity in high-altitude proglacial lakes on the southern Qinghai-Xizang Plateau, which lays a theoretical foundation for exploiting microbial resources and understanding their ecological functions in such extreme environments. Full article

Saline ecosystems, including saline lakes, are indeed major hotbeds of microbial novelty, harboring diverse and largely unexplored microbes. The sebkha of Lake Naïla (Morocco), an ecologically protected area registered under the Ramsar Convention in 1998, remains largely unexplored. Isolation using three different selective media enabled seven phenotypically distinct actinobacterial isolates to be obtained. Molecular characterization, based on 16S RNA gene sequencing, was used to identify strains as members of the genera Streptomyces, Nocardiopsis, and Prauserella. Three strains showed antimicrobial potential against pathogenic microorganisms, with Streptomyces sp. strain 43 exhibiting the most potent effects. Additionally, all isolates displayed plant-growth-promoting (PGP) traits, including phosphate solubilization, auxin (IAA) synthesis, siderophore secretion, and ammonia production. Notably, Nocardiopsis sp. strain 42 produced the highest IAA levels (282 μg/mL), while Streptomyces sp. strain 39, Streptomyces sp. strain 43, and Streptomyces sp. strain 48 excelled in phosphate solubilization. GC-MS profiling of Streptomyces sp. strain 43 revealed a complex metabolite repertoire, including 1,2-propanediol and nonanal, highlighting the strain’s versatile secondary metabolism. These findings highlight that the sebkha of Lake Naïla represents a rich source of halophilic actinobacteria with promising dual potential for antimicrobial and biofertilizer applications. The findings provide a solid basis for new perspectives on biotechnology applications and sustainable agriculture. Full article

The global methane budget is largely driven by biogenic sources, many of which remain insufficiently characterized. Here, we investigated the community composition and seasonal dynamics of methanogenic and methanotrophic assemblages to elucidate the key contributors to methane cycling and the environmental factors shaping these processes in lake sediments of the Rila Mountains (Bulgaria). Methanogenic communities are primarily composed of Methanothrix, Methanosarcina, Methanobacterium and Methanoregula with summer peaks in Methanothrix and Methanoregula, and cold-season proliferation of Methanobacterium. Methanotrophic communities are dominated by representatives of the Pseudomonadota, including Crenothrix, Methylobacter, and Methylocystis with summer maxima observed for Crenothrix and Methylobacter. Methanosarcina and Methylocystis showed relatively stable abundances throughout the ice-free season. Ordination and correlation analyses revealed that temperature, pH, and carbon (organic and inorganic) concentration and lability emerged as the environmental drivers influencing on microbial communities, with seasonally variable effects on methane-cycling microorganisms. These findings provide a foundation for future research on methane cycling in alpine lake ecosystems of the Rila Mountains and contribute to improving predictions of methane emissions under changing climatic conditions. Full article

Although sedimentary zones in Lake Taihu differ in external inputs, hydrodynamic conditions, and sedimentary settings, the spatial differentiation of eukaryotic microbial communities and their assembly mechanisms remain insufficiently understood. This study analyzed sediment cores from four typical sedimentary zones of Lake Taihu: Dapu (DP), Gonghu (GH), the central lake area (HX), and Xuhu (XH). By integrating physicochemical measurements, 18S rRNA gene high-throughput sequencing, redundancy analysis, functional annotation, iCAMP, and co-occurrence network analysis, we characterized the composition, environmental associations, and assembly mechanisms of sedimentary eukaryotic microbial communities. The results showed that eukaryotic microbial communities in Lake Taihu sediments exhibited marked spatial heterogeneity, with dominant taxonomic groups including Chlorophyta, Intramacronucleata, and Diatomea. Alpha diversity was higher in the GH zone and lower in the HX zone, whereas beta diversity showed significant separation among lake zones. NH₄⁺-N, NO₃⁻-N, TN, TP, TOC, D50, MWC, and pH were associated with variation in community composition, but the main associated factors differed among zones. FunGuild annotation showed that annotated fungal functional groups exhibited distinct trophic distribution patterns across sedimentary zones. iCAMP analysis indicated that community assembly was generally dominated by stochastic processes, with dispersal limitation prevailing in the GH zone and ecological drift dominating in the DP, HX, and XH zones. Co-occurrence network analysis further revealed marked differentiation in potential biological associations among sedimentary zones. Overall, this study showed that nutrient conditions and sediment physical properties in different sedimentary environments of Lake Taihu jointly shaped the spatial patterns of eukaryotic microbial communities and their ecological associations, providing baseline information for understanding sedimentary ecological processes in eutrophic shallow lakes. Full article

Freshwater scarcity is a major global issue faced by various regions, and the most common portable water sources globally are estuaries, canals, dams, lakes, and rivers. Existing water resources function as the best sinks for the frequent release of effluents from industrial and residential activities. This common practice often results in water pollution, a deterioration in marine biodiversity, and possible health risks for human populations. This study employed standard analytical methods in assessing the physicochemical and microbial characteristics of water samples collected from the Sundays River estuary in Eastern Cape Province (ECP), South Africa (SA). Microbiological assessment revealed that during the spring season, presumptive Escherichia coli (E. coli) colony counts were 1 cfu/100 mL, while total coliforms (TCs) and fecal coliforms (FCs) were recorded at 42.67 cfu/100 mL and 1 cfu/100 mL, respectively. In the summer season, fecal coliform (FC) counts reached 3.5 cfu/100 mL, while Enterococcus levels were higher, ranging up to 77.75 cfu/100 mL. Furthermore, the average standards of physicochemical parameters assessed in water obtained from both spring and summer seasons ranged as follows: pH (8.71–9.31), temperature (20.98–22.21 °C), turbidity (10–35.55 FNU), total alkalinity (22.25–94.00 mg/L), oxidation–reduction potential (ORP) (8.05–151.6 mV), electrical conductivity (EC) (13,915–40,260 uS/cm), salinity (8.07–25.78 psu), dissolved oxygen (DO) (6.79–7.39 mg/L), total dissolved solids (TDSs) (6960.6–20,125 mg/L), and biochemical oxygen demand (BOD) (0.11–2.94 mg/L). The levels of TDS, EC, turbidity, and salinity in the Sundays River estuary water exceeded the World Health Organization (WHO) guidelines of 2017, rendering the water unfit for even recreational purposes. Additionally, the bacterial levels identified in this study were above the values set by the South Africa Department of Water Affairs (SA-DWAF). The identified microorganisms are perceived as essential indicators of fecal contamination and have the potential to multiply in the environment. Possible pollution may be a result of various municipal effluents consistently discharged into the waterbody. Full article

Microalgae and cyanobacteria are photosynthetic microorganisms capable of removing nutrients from eutrophic waters and producing biomass. Therefore, the aim of this study was to evaluate the bioremediation performance of three microalgae and one cyanobacterium native to Lake Xochimilco and to assess their potential for biofuel production (biodiesel and biogas) from biomass generated. In photobioreactors, ammonium (96.61–97.06%), nitrate (82.4–100%), and phosphate (83.95–89.71%) were effectively removed from the lake water. The specific growth rates ranged from 0.041 to 0.144 d⁻¹ and biomass productivities from 0.016 to 0.049 g L⁻¹ d⁻¹, with high biomass yield on the substrate. The estimated CO₂ fixation rates ranged from 0.024 to 0.092 g L⁻¹ d⁻¹. Chlorella sp. achieved the highest yield of fatty acid methyl esters (FAMEs) with 91.24% of the extracted lipids. Overall, saturated FAMEs were predominant in the biodiesel; however, the presence of monounsaturated FAMEs such as methyl palmitoleate and methyl oleate enhances their fluidity and oxidative stability. Synechocystis sp. and Chlorella sp. produced the most biogas using biomass after lipid extraction, at 429.5 L kg⁻¹ VS and 404.9 L kg⁻¹ VS, respectively, with over 60% biomethane. These strains represent a sustainable and promising possibility for water bioremediation and generating biofuels. Full article

In cold-region lakes, high organic matter concentrations with low bioavailability are common, yet the underlying causes and stabilisation mechanisms remain unclear. This study conducted a 60-day microbial treatment experiment in Hulun Lake using algae (DOMa), grass (DOMg), and manure (DOMm) as DOM sources. Fourier transform ion cyclotron resonance mass spectrometry and 16S rRNA analysis were employed to characterise DOM composition and bacterial communities. The bioavailability of DOMa, DOMg, and DOMm was 86.1%, 84.08%, and 70.9%, respectively. Differences in degradation cycles were mainly associated with the slowly biodegradable fraction; the half-lives of DOMa, DOMg, and DOMm were 49.51 days, 77.02 days, and 198.04 days, respectively. At the molecular level, proteins and lipids were rapidly utilised by microorganisms, leading to the generation of lignin, condensed aromatic hydrocarbons, and tannins, with many new molecules falling within the carboxylic acid-rich alicyclic molecule (CRAM) region. The overall community succession patterns of different DOM sources were highly similar, with initial DOM composition differences leading to variations in microbial communities during intermediate degradation stages (5~10 days). Moreover, microbiological processes facilitated the convergence of DOM source compositions and the accumulation of refractory organic matter. It is hypothesised that the regional climatic characteristics of the freeze–thaw cycle exacerbate organic matter accumulation by compressing the “effective degradation time”. These findings elucidate the causes of high organic matter and low bioavailability in cold-region lakes. Full article

The western honey bee (Apis mellifera) represents a key pollinator for both crops and wild plants, and its global decline raises serious concerns for ecosystem stability and agricultural productivity. Several biotic and abiotic factors are responsible for colony losses, including alterations in the bee microbiota, which is essential for host metabolism, development, and immune responses. In this study, we employed both molecular protocols and metagenomic approaches based on Next-Generation Sequencing (NGS) to characterize the microbial composition and identify commensal, symbiotic, and pathogenic microorganisms, both known and emerging, associated with A. mellifera colonies from 20 apiaries across the Italian territory. Molecular screening revealed Vairimorpha ceranae, Lotmaria passim, Crithidia mellificae and several viruses, including Sacbrood virus (SBV), Black Queen Cell virus (BQCV), Deformed Wing virus (DWV), Chronic Bee Paralysis virus (CBPV) and Acute Bee Paralysis virus (ABPV). 16S rRNA gene sequencing highlighted a bacterial community mainly composed of the Lactobacillus, Gilliamella, and Snodgrassella genera. Virome analysis detected members belonging to the families Dicistroviridae and Iflaviridae, as well as previously unreported viruses in Italy, such as Apis rhabdovirus (ARV-1, ARV-2), Bee Macula-like virus (BeeMLV), and Lake Sinai virus (LSV). This research expands current knowledge of the A. mellifera metagenome, offering valuable insights for epidemiological surveillance and diagnostic assay development. Full article

Plastic and microplastic (MP) pollution, along with alien species invasion, are of great concern for natural habitat preservation and human health, and are two important and concomitant likely causes for global biodiversity loss. In the present study, a Seabin, a device for buoyant waste collection in calm waters, was used to also characterize the waste collected in northernmost side of Lake Garda (Italy) in a period of very low anthropogenic pressure, the Winter season of 2024–2025. During the survey, 92.6 g of plastic was collected, i.e., a total of 540 pieces. About 6.9 mg of plastic per m³ of water was found, corresponding to about 0.04 plastic items per m³ and approximately 13 pieces of microplastics per day. Fourier-transform Infrared (FTIR) spectroscopy identification showed that the plastic was composed mainly of polyethylene (PE), polypropylene (PP), and polystyrene (PS). Microorganisms (Diatoms, Bacillariophyta) and microcrack formation with deposits of inorganic matter (mainly Si, Al, O, Ca) were also evidenced by SEM/EDX in all the observed aged MP. Qualitative evaluation of the captured biota highlighted the presence of at least five alien species, including invasive Dikerogammarus villosus. This study describes an easy and cost-effective novel methodology for simultaneously monitoring plastic waste and alien species presence in calm waters, which acts also as a mitigation tool for plastic pollution. The results could be of interest not only to policymakers and scientists, but also for public health and for environmental monitoring. Full article

Climate warming is an important driver influencing soil microbial involvement in carbon cycling. To clarify the responses of carbon-fixing microorganisms in alpine lakeshore wetlands, we conducted a warming experiment using open-top chambers (OTCs) in the Qinghai Lake lakeshore wetland and applied high-throughput sequencing of the cbbM gene. The results indicated that warming significantly increased soil temperature and reduced soil moisture, but had no significant effects on soil pH, total carbon, or total nitrogen content. Despite the stability of community α-diversity, warming markedly reshaped the community composition and significantly elevated the relative abundances of dominant taxa including Ensifer and Hydrogenovibrio. In addition, warming significantly strengthened the assembly process of the cbbM-bearing carbon-fixing microbial community, in which heterogeneous selection played a leading role. Redundancy analysis revealed that soil total nitrogen and pH were major drivers influencing the composition of the microbial community. Notably, despite significant fluctuations in taxonomic composition, the functional profile dominated by sulfur oxidation and phototrophy remained unchanged, indicating strong functional redundancy. Overall, cbbM carbon-fixing microorganisms in alpine lakeshore wetlands effectively buffered environmental disturbances through functional redundancy and maintained stable carbon metabolic functions, providing scientific evidence for the short-term resilience of carbon sink functions in alpine wetlands under climate warming. Full article

High-salinity water environments, e.g., saline lacustrine basins and lagoons, represent significant sedimentary settings on Earth. They serve not only as crucial archives of paleoclimate and paleoenvironmental evolution but also as favorable realms for the development of high-quality hydrocarbon source rocks. Although traditional views suggested that high salinity inhibits biological activity and is thus detrimental to source rock formation; recent hydrocarbon discoveries in formations such as the Leikoupo Formation (Sichuan Basin) and Majiagou Formation (Ordos Basin) in China have confirmed the exceptional hydrocarbon generation potential of source rocks in such settings. Focusing on major sedimentary basins in China, this review synthesizes how high-salinity settings critically control the integrated “generation-storage” sequence of hydrocarbon source rocks. Research indicates that moderate salinity can promote blooms of halophilic microorganisms, e.g., algae, cyanobacteria, resulting in high primary productivity. Concurrently, salinity-driven stable water stratification creates a strongly reducing bottom water environment, which greatly facilitates the preservation of organic matter, establishing a synergistic enrichment model of “high productivity—excellent preservation.” Products of high-salinity environments, such as evaporites, e.g., gypsum, halite, can act as catalysts, lowering the activation energy for hydrocarbon generation and enhancing hydrocarbon yield. Additionally, associated organic salts provide supplementary material for hydrocarbon generation. Regarding reservoir quality, the laminated structures formed in high-salinity settings, combined with organic–inorganic synergistic diagenesis, e.g., dolomitization, organic acid dissolution, and hydrocarbon-generation overpressure, collectively shape high-quality reservoirs with significant heterogeneity. Despite important progress, challenges remain, including the quantitative analysis of primary factors controlling organic matter enrichment, the threshold of salinity inhibiting biological communities, and the prediction of strongly heterogeneous reservoirs. Saline settings serve as critical carbon sinks in the geological carbon cycle through high primary productivity, enhanced preservation conditions, and distinctive mineral assemblages, playing a particularly important role in the formation of hydrocarbon source rocks and long-term carbon sequestration. Future research should integrate modern saline lake observations with high-resolution characterization techniques to deepen the understanding of the formation mechanisms of high-salinity source rocks, aiming to provide theoretical guidance and exploration targets for petroleum systems in similar geological settings worldwide. Full article

Nutrient cycling has barely been studied in acidic environments and may have an important influence on the evolution of the microbial communities. In this research, we studied nutrient sources and fluxes in acidic metal-mine pit lakes to evaluate their relationship with the lakes’ microbial ecology. Nutrient concentrations (including phosphorus, nitrogen, and dissolved inorganic carbon) increase with depth in all the studied pit lakes. Phosphorus comes mainly from the leaching of the host rock and is rapidly scavenged from the aqueous phase in the oxygenic and Fe(III)-rich mixolimnion due to adsorption on ferric precipitates (schwertmannite, jarosite), which leads to an important P-limitation in the photic zone. Below the chemocline, however, the sum of phosphorus inputs (e.g., settling of algal biomass, desorption from the ferric compounds, microbial reduction of Fe(III)-sediments) sharply increases the concentration of this element in the anoxic monimolimnion. Nitrogen is very scarce in the host rocks, and only a limited input occurs via atmospheric deposition followed by N-uptake by algae, N-fixation by acidophilic microorganisms, sedimentation, and organic matter degradation in the sediments. The latter process releases ammonium to the anoxic monimolimnion and allows some nitrogen cycling in the chemocline. Soluble SiO₂ in the mixolimnion is abundant and does not represent a limiting nutrient for diatom growth. Differences in phytoplankton biomass and extent of bacterial sulfate reduction between relatively unproductive lakes (San Telmo) and the more fertile lakes (Cueva de la Mora) are likely caused by a P-limitation in the former due to the abundance of ferric iron colloids in the water column. Our results suggest that phosphorus amendment in the photic zone could be an efficient method to indirectly increase acidity-consuming and metal-sequestering bacterial metabolisms in these lakes. Full article

In this study, gut microorganisms of herbivorous grass carp, omnivorous carp, crucian carp, and aquatic microorganisms were collected from natural salt–alkali lakes and ponds in Xinjiang in winter to analyze their community structures. We sequenced 16S rRNA amplicons to investigate the composition and function of the microorganisms in the gut. PCoA analysis revealed that the gut microbiota of herbivorous and omnivorous fish formed two distinct clusters. Proteobacteria, Actinobacteria, Desulfobacterota, Firmicutes, and Chloroflexia are the dominant bacteria in the gut of fish. Proteobacteria, Bacteroidetes, Actinobacteria, Cyanobacteria, and Gram-negative bacteria are the dominant bacteria in the water. Carbohydrate- and protein-degrading bacteria, such as Desulfofustis, Lactiplantibacillus, and Vibrio, were predominant in omnivorous fish (CC and GRC), while cold-resistant bacteria, such as Shewanella and Psychromonas, were colonized in grass carp. This suggests that the same environment does not lead to similar gut bacteria, and that specific endogenous factors play a far more important role in shaping the microbiota composition than environmental factors. Full article

Microorganisms serve as a vital source of natural anticancer agents, with many of their secondary metabolites already employed in clinical oncology. In recent years, salt-adapted microbes, including halophilic and halotolerant species from marine, salt lake, and other high-salinity environments, have gained significant attention. Their unique adaptation mechanisms and diverse secondary metabolites offer promising potential for novel anticancer drug discovery. This review consolidated two decades of research alongside current global cancer statistics to evaluate the therapeutic potential of salt-adapted microorganisms. Halophilic and halotolerant species demonstrate significant promise, with their bioactive metabolites exhibiting potent inhibitory effects against major cancer cell lines, particularly in lung and breast cancer. Evidence reveals structurally unique secondary metabolites displaying enhanced cytotoxicity compared to conventional anticancer drugs. Collectively, salt-adapted microorganisms represent an underexplored yet high-value resource for novel anticancer agents, offering potential solutions to chemotherapy resistance and treatment-related toxicity. Full article

Aquatic fungi serve as core ecological engines in freshwater ecosystems, driving organic matter decomposition and energy flow to sustain environmental balance. Wetlands, with their distinct hydrological dynamics and nutrient-rich matrices, serve as critical habitats for these microorganisms. As an internationally designated Ramsar Site, Yunnan Dashanbao Black-Necked Crane National Nature Reserve in China not only sustains endangered black-necked cranes but also harbors a cryptic reservoir of aquatic fungi within its peat marshes and alpine lakes. This study employed high-throughput sequencing to characterize fungal diversity and community structure across 12 understudied wetland sites in the reserve, while analyzing key environmental parameters (dissolved oxygen, pH, total nitrogen, and total phosphorus). A total of 5829 fungal operational taxonomic units (OTUs) spanning 649 genera and 15 phyla were identified, with Tausonia (4.17%) and Cladosporium (1.89%) as dominant genera. Environmental correlations revealed 19 genera significantly linked to abiotic factors. FUNGuild functional profiling highlighted saprotrophs (organic decomposers) and pathogens as predominant trophic guilds. Saprotrophs exhibited strong associations with pH, total nitrogen, and phosphorus, whereas pathogens correlated primarily with pH. These findings unveil the hidden diversity and ecological roles of aquatic fungi in alpine wetlands, emphasizing their sensitivity to environmental gradients. By establishing baseline data on fungal community dynamics, this work advances the understanding of wetland microbial ecology and informs conservation strategies for Ramsar sites. Full article