Search Results (21)

The indiscriminate use of antibiotics in food-producing animals serves as a major catalyst for the emergence of antibiotic-resistant infections. This study aimed to assess the genetic diversity and antibiotic resistance of Enterobacterales in animal-derived foods. A total of 905 animal-derived food samples, including meat, dairy, poultry, fish, and environmental sources, were collected from various locations in Pakistan. Isolates were confirmed through selective subculturing, morphological, biochemical, and MALDI-TOF analysis, followed by antibiotic susceptibility testing. Subsequently, PCR-based detection of antibiotic resistance genes and virulence-associated genes. Overall, a total of 263 (29.06%) Enterobacterales were identified, as follows: 58.55% (154/263) E. coli, 6.84% (18/263) K. pneumoniae, 21.29% (56/263) P. mirabilis, and 13.30% (35/263) Salmonella spp. Isolates showed a varying resistance pattern against different studied antibiotics, e.g., beta-lactams and inhibitors, ciprofloxacin, and tetracycline, while colistin and tigecycline remained most effective. All the isolates displayed an array of antibiotic resistance and virulence-associated genes. Particularly significant (<0.05) co-existence of bla_NDM and mcr-1 was observed among the Enterobacterales isolated from various animal-derived foods. This study underscores the need to monitor Enterobacterales in animal-derived foods, especially in developing countries, to curb the spread of resistant pathogens and ensure effective food safety measures. Full article

To evaluate and compare the effectiveness of prediction models for Argentine squid Illex argentinus trawling grounds in the Southwest Atlantic high seas based on vessel position and fishing log data, this study used AIS datasets and fishing log datasets from fishing seasons spanning 2019–2024 (December to June each year). Using a spatial resolution of 0.1° × 0.1° and a monthly temporal resolution, we constructed two datasets—one based on vessel positions and the other on fishing logs. Fishing ground levels were defined according to the density of fishing locations, and combined with oceanographic data (sea surface temperature, 50 m water temperature, sea surface salinity, sea surface height, and mixed layer depth). A CNN-Attention deep learning model was applied to each dataset to develop Illex argentinus trawling ground prediction models. Model accuracy was then compared and potential causes for differences were analyzed. Results showed that the vessel position-based model had a higher accuracy (Accuracy = 0.813) and lower loss rate (Loss = 0.407) than the fishing log-based model (Accuracy = 0.727, Loss = 0.513). The vessel-based model achieved a prediction accuracy of 0.763 on the 2024 test set, while the fishing log-based model reached an accuracy of 0.712, slightly lower than the former, indicating the high accuracy and unique advantages of the vessel position-based model in predicting fishing grounds. Using CPUE from fishing logs as a reference, we found that the vessel position-based model performed well from January to April, whereas the CPUE-based model consistently maintained good accuracy across all months. The 2024 fishing season predictions indicated the formation of primary fishing grounds as early as January 2023, initially near the 46° S line of the Argentine Exclusive Economic Zone, with grounds shifting southeastward from March onward and reaching around 42° S by May and June. This study confirms the reliability of vessel position data in identifying fishing ground information and levels, with higher accuracy in some months compared to the fishing log-based model, thereby reducing the data lag associated with fishing logs, which are typically available a year later. Additionally, national-level fishing log data are often confidential, limiting the ability to fully consider fishing activities across the entire fishing ground region, a limitation effectively addressed by AIS vessel position data. While vessel data reflects daily catch volumes across vessels without distinguishing CPUE by species, log data provide a detailed daily CPUE breakdown by species (e.g., Illex argentinus). This distinction resulted in lower accuracy for vessel-based predictions in December 2023 and May–June 2024, suggesting the need to incorporate fishing log data for more precise assessments of fishing ground levels or resource abundance during those months. Given the near-real-time nature of vessel position data, fishing ground dynamics can be monitored in near real time. The successful development of vessel position-based prediction models aids enterprises in reducing fuel and time costs associated with indiscriminate squid searches, enhancing trawling efficiency. Additionally, such models support quota management in global fisheries by optimizing resource use, reducing fishing time, and consequently lowering carbon emissions and environmental impact, while promoting marine environmental protection in the Southwest Atlantic high seas. Full article

The pervasiveness of microplastics (MPs) in terrestrial and aquatic ecosystems has become a significant environmental concern in recent years. Because of their slow rate of disposal, MPs are ubiquitous in the environment. As a consequence of indiscriminate use, landfill deposits, and inadequate recycling methods, MP production and environmental accumulation are expanding at an alarming rate, resulting in a range of economic, social, and environmental repercussions. Aquatic organisms, including fish and various crustaceans, consume MPs, which are ultimately consumed by humans at the tertiary level of the food chain. Blocking the digestive tracts, disrupting digestive behavior, and ultimately reducing the reproductive growth of entire living organisms are all consequences of this phenomenon. In order to assess the potential environmental impacts and the resources required for the life of a plastic product, the importance of life cycle assessment (LCA) and circularity is underscored. MPs-related ecosystem degradation has not yet been adequately incorporated into LCA, a tool for evaluating the environmental performance of product and technology life cycles. It is a technique that is designed to quantify the environmental effects of a product from its inception to its demise, and it is frequently employed in the context of plastics. The control of MPs is necessary due to the growing concern that MPs pose as a newly emergent potential threat. This is due to the consequences of their use. This paper provides a critical analysis of the formation, distribution, and methods used for detecting MPs. The effects of MPs on ecosystems and human health are also discussed, which posed a great challenge to conduct an LCA related to MPs. The socio-economic impacts of MPs and their management are also discussed. This paper paves the way for understanding the ecotoxicological impacts of the emerging MP threat and their associated issues to LCA and limits the environmental impact of plastic. Full article

Indiscriminate expansion of agricultural activities into wetlands affects the sustainability of wetland-dependent livelihoods. Systems research is an important tool for identifying and dealing with the underlying drivers of wetland degradation; however, there is limited research employing system tools in Sub-Saharan Africa. This research employed causal loop diagrams and system archetypes to characterize common wetland resource systems in Sub-Saharan Africa, using the wetland agricultural system of Uganda as a case study. Mental models of wetland users were indirectly elicited by interviewing 66 wetland users. Causal loop diagrams were generated to illustrate the multiple, interdependent feedback linkages within the system. The case study wetland is mainly used for farming (40%), vegetation harvesting (26%), and fishing (24%), while other activities like hunting and grazing are carried out by 10% of wetland users. A reinforcing feedback loop was dominant, illustrating how initial encroachment on the wetland to meet livelihood needs can accelerate further encroachment. Based on the dominant loop and current interventions, we characterized the system using three archetypes: tragedy of the commons, shifting the burden, and fixes that fail. A two-pronged approach was proposed, where solutions for decelerating wetland degradation, like restoration activities, can be implemented in the short term while planning long-term measures that take into account the need for alternative livelihoods for wetland-dependent communities and targeting a paradigm shift through continuous sensitization of stakeholders on the benefits of sustainable wetland management. Full article

Frequently, diseases in aquaculture have been fought indiscriminately with the use of antibiotics, which has led to the development and dissemination of (multiple) antibiotic resistances in bacteria. Consequently, it is necessary to look for alternative and complementary approaches to chemotheraphy that are safe for humans, animals, and the environment, such as the use of probiotics in fish farming. The objective of this work was the Whole-Genome Sequencing (WGS) and bioinformatic and functional analyses of S. salivarius MDI13 and L. sakei MEI5, two LAB strains isolated from the gut of commercial European hakes (M. merluccius, L.) caught in the Northeast Atlantic Ocean. The WGS and bioinformatic and functional analyses confirmed the lack of transferable antibiotic resistance genes, the lack of virulence and pathogenicity issues, and their potentially probiotic characteristics. Specifically, genes involved in adhesion and aggregation, vitamin biosynthesis, and amino acid metabolism were detected in both strains. In addition, genes related to lactic acid production, active metabolism, and/or adaptation to stress and adverse conditions in the host gastrointestinal tract were detected in L. sakei MEI5. Moreover, a gene cluster encoding three bacteriocins (SlvV, BlpK, and BlpE) was identified in the genome of S. salivarius MDI13. The in vitro-synthesized bacteriocin BlpK showed antimicrobial activity against the ichthyopathogens Lc. garvieae and S. parauberis. Altogether, our results suggest that S. salivarius MDI13 and L. sakei MEI5 have a strong potential as probiotics to prevent fish diseases in aquaculture as an appropriate alternative/complementary strategy to the use of antibiotics. Full article

Striped catfish Pangasianodon hypopthalmus (Sauvage, 1878) is a flagship catfish species of the Mekong River region, a commercially valuable food fish that is important in freshwater fisheries, and a popular aquaculture species in many Asian countries. The species was assessed as “Endangered” by the International Union for Conservation of Nature (IUCN) due to range contraction and declining abundance, though the status of the species’ wild population in Cambodia, a critical habitat for the species, is not well understood. Here, we assess the population status of the striped catfish in Cambodia using multiple sources, including time-series catch data and length frequency distribution data from a commercial fishery (stationary trawl bagnet or dai) operated in the Tonle Sap River from 1998/99 to 2017/18 and larval drift data monitored in the Mekong River in Phnom Penh from 2004 to 2018. We found that there was a significant decline (R² = 0.54, p = 0.0002) in the catch (metric tonnes) of the striped catfish from the commercial dai fishery over the last two decades. Similarly, length-based indicator analysis indicates that striped catfish mean length and abundance have both declined over the study period, raising concerns about the sustainability of river catfish fisheries. Moreover, long-term larval drift monitoring in Mekong River shows that there was a marginally significant decline in the quantity of striped catfish larvae/juvenile drifting downstream to the lower floodplain over the last decade. Changes in flood index (extent and duration of flood) in the Tonle Sap floodplain affected by the Mekong’s flow are likely key factors driving the decline of the wild populations of the striped catfish. Both larval fish abundance and floodplain fish harvests have a significant positive relationship with Mekong flow and flood extent. Indiscriminate fishing exacerbates pressures on striped catfish stocks. Therefore, actions such as maintaining natural seasonal flows (flood timing, extent, and duration) to the Tonle Sap floodplain and protecting migratory fish stocks from overharvest and habitat fragmentation are essential to the persistence of stocks of striped catfish and other large-bodied migratory fishes that utilize both the Cambodian Mekong and Tonle Sap floodplains. Full article

Port sites represent one of the most impacted coastal areas; this impact is due to intensive anthropogenic pressures. In addition to the port complex itself, associated activities, such as indiscriminate disposal of pollutants, including trace metals, affect the local ecosystem. Macroinvertebrate benthic communities are one of the most effective bioindicators of environmental health because of their importance as a primary food source for many fish, birds, and mammals, as well as their influence on sediment stability and geochemical composition. This article evaluates the benthic macrofauna in the Santos Estuarine System (SES), the location of the Santos Port Complex (SPC), linking trace metal levels to differences in microbenthic community structure and pollutant bioavailability. The distribution of Cd, Ni, and Pb was directly related to organic matter deposits, while Cu and Zn appeared to result from port activities. The SES contained a poor benthic macroinvertebrate community, resulting from the contaminated muddy sediments. A significant negative correlation was found between the macrobenthic diversity and concentrations of Cu in the soluble phase; this implied the pollution-induced degradation of the macrobenthos in SES. Full article

Advected cyanobacteria, algal blooms and cyanotoxins have been increasingly detected in freshwater ecosystems. This review gives an insight into the present state of knowledge on the taxonomy, dynamics, toxic effects, human and ecological health implications of cyanobacteria, algal blooms and cyanotoxins in the East African Community lakes. The major toxigenic microalgae in East African lakes include Microcystis, Arthrospira, Dolichospermum, Planktolyngbya and Anabaenopsis species. Anatoxin-a, homoanatoxin-a, microcystins (MCs), cylindrospermopsin and nodularin have been quantified in water from below method detection limits to 81 µg L⁻¹, with peak concentrations characteristically reported for the wet season. In whole fish, gut, liver and muscles, MCs have been found at concentrations of 2.4 to 1479.24 μg kg⁻¹, which can pose human health risks to a daily consumer. While there have been no reported cases of cyanotoxin-related poisoning in humans, MCs and anatoxin-a (up to 0.0514 μg kg⁻¹) have been identified as the proximal cause of indiscriminate fish kills and epornitic mortality of algivorous Phoeniconaias minor (lesser flamingos). With the unequivocal increase in climate change and variability, algal blooms and cyanotoxins will increase in frequency and severity, and this will necessitate swift action towards the mitigation of nutrient-rich pollutants loading into lakes in the region. Full article

Aquaculture is the fastest-growing, most dynamic, and vital food-producing sector compared to other food-producing industries. However, aquaculture production is hampered by a variety of bacterial, viral, fungal, and parasitic diseases. Fish farmers routinely apply various types of aqua-chemicals, particularly antibiotics and pesticides, to reduce the disease burden. Antibiotics and pesticides are widely used to increase fish production around the world, including Bangladesh. Between March 2020 and February 2021, a survey was conducted via face-to-face interviews with fish farmers in the Rajshahi district, Bangladesh, to determine the current status of the use of antibiotics, pesticides, and other aqua-chemicals in the rearing of freshwater finfishes. Nine active antibiotics ingredients belonging to 11 trade names of antibiotics, various pesticides, numerous disinfectants, and aqua-chemicals were found to be used in finfish rearing. The renamycin (active ingredient: oxytetracycline) was most commonly used antibiotics by freshwater finfish farmers in the study areas. In case of pesticides, sumithion and timsen were found to be used mostly by fish farmers. In addition, four distinct probiotics were found to be used in aquaculture in the study areas. The present study revealed several issues related to the use of aqua-drugs in the study areas. For instance, the majority of fish farmers (88%) lacked knowledge in the use of aqua-chemicals and antibiotics, and 81% of fish farmers were unaware about the effective dosages of chemicals in fish farming. Thirty seven percent of fish farmers in the study areas reported the indiscriminate use of chemicals. Furthermore, a considerable proportion of fish farmers (72%) reported ignorance about the residual effects of the aqua-chemicals on the aquatic environment and human health. As a result, this preliminary study suggests that the use of antibiotics, pesticides, and other aqua-chemicals in aquaculture should be strictly monitored and controlled by the responsible authorities of Bangladesh. Moreover, further research needs to be expanded on the detection of residues from aqua-drugs and antibiotics in the aquaculture system, and their consequences on the ecosystem and human health. Full article

T. macdonaldi is a carnivorous species endemic to the Gulf of California. Indiscriminate exploitation has put totoaba at risk, inducing the development of aquaculture procedures to grow it without affecting the wild population. However, aquafeeds increasing cost and low yields obtained with commercial feeds have motivated researchers to look for more nutritious and cheaper alternatives. Soybean (SB) is the most popular alternative to fishmeal (FM); however, antinutritional factors limit its use in carnivorous species. In this study, we analyzed B. subtilis 9b probiotic capacity to improve growth performance and health status of T. macdonaldi fed with formulations containing 30% and 60% substitution of fish meal with soy protein concentrate (SPC). In addition, we investigated its effect on internal organs condition, their capacity to modulate the intestinal microbiota, and to boost the immunological response of T. macdonaldi against V. harveyi infections. In this sense, we found that T. macdonaldi fed with SPC30Pro diet supplemented with B. subtilis 9b strain and 30% SPC produced better results than SPC30C control diet without B. subtilis and DCML commercial diet. Additionally, animals fed with SPC60Pro diet supplemented with B. subtilis 9b strain and 60% SPC doubled their weight and produced 20% more survival than SPC60C control diet without B. subtilis. Thus, B. subtilis 9b improved T. macdonaldi growth performance, health status, modulated intestinal microbiota, and increased animal’s resistance to V. harveyi infections, placing this bacterium as an excellent candidate to produce functional feeds with high levels of SPC. Full article

Biodiversity assessment is important for evaluating community conservation status. The haor basin in Sylhet Division represents a transitional zone with high species availability, rare occurrences and endemism. As a result, this study aims to describe the haor-based freshwater fish composition, including habitat, trophic ecology, availability and conservation status. Semi-structured questionnaires were used to collect data on fish samples through focus group discussions, field surveys, and interviews with fisheries stakeholders on a monthly basis. We identified 188 morpho-species, of which 176 were finfish and 12 shellfish, distributed into 15 orders and 42 families where 29%, 42%, 15%, and 14% species were commonly available, moderately available, abundantly available, and rarely available, respectively. Cypriniformes was the dominant order in both total species and small indigenous species identified. Approximately 45.34% of species were riverine, 31.58% floodplain residents, 12.55% estuarine, 2.83% migratory, and 7.69% were exclusively hill stream residents. Carnivores and omnivores were the most dominant trophic groups. A total of 87.76% species were used as food, 12.23% as ornamental and 6.91% as sport fish. Approximately 50 species were threatened (7 critically endangered, 23 endangered and 20 vulnerable) at the national level, most of them belonging to Cypriniformes and Siluriformes. Based on endemism, 16 species were endemic of which Sygnathidae, Cobitidae, Olyridae, Cyprinidae and Balitoridae fell under the threatened category. Minimizing intense fishing efforts, banning indiscriminate fishing and destructive fishing gear, initiating fish sanctuaries and beel nurseries, and implementing eco-friendly modern fishing technology are suggested to conserve the threatened species. This study represents a guideline for assessing the availability and conservation of freshwater fish in the Sylhet belt and serves as a reference for decision-makers in order to allow for the sustainable exploitation of fisheries resources within an ecosystem-based framework. Full article

The genus Vibrio comprises an important group of ubiquitous bacteria of marine systems with a high infectious capacity for humans and fish, which can lead to death or cause economic losses in aquaculture. However, little is known about the evolutionary process that led to the adaptation and colonization of humans and also about the consequences of the uncontrollable use of antibiotics in aquaculture. Here, comparative genomics analysis and functional gene annotation showed that the species more related to humans presented a significantly higher amount of proteins associated with colonization processes, such as transcriptional factors, signal transduction mechanisms, and iron uptake. In comparison, those aquaculture-associated species possess a much higher amount of resistance-associated genes, as with those of the tetracycline class. Finally, through subtractive genomics, we propose seven new drug targets such as: UMP Kinase, required to catalyze the phosphorylation of UMP into UDP, essential for the survival of bacteria of this genus; and, new natural molecules, which have demonstrated high affinity for the active sites of these targets. These data also suggest that the species most adaptable to fish and humans have a distinct natural evolution and probably undergo changes due to anthropogenic action in aquaculture or indiscriminate/irregular use of antibiotics. Full article

Malachite green (MG) is a triphenylmethane cationic dye used in aquaculture practice, although it has been banned in several countries. The illegal use by fish producers, however, persists due to its effectiveness, and ready and cheap supply. To prevent indiscriminate applications, strict control measures with simple analytical approaches are therefore necessary. With this purpose, a novel, cheap and simple method applying electrospun polyimide nanofibers was developed and validated for MG control in water by color image analysis. For detection, a simple apparatus and ImageJ^® software to treat images captured by common smartphones were used. A detection limit of 0.013 mg/L with a linear analytical response range within the concentration of 0.05 to 0.3 mg/ L of malachite green (MG) with a correlation coefficient of 0.997 and standard deviation (n = 9) varying from 1.01 to 3.92% was achieved with the proposed method. Accuracy was assessed by recovery assays in water samples and percentages of 96.6 to 102.0% were obtained. The method is robust and suitable for the rapid and reliable monitoring of MG in water. Full article

Rex retroelements are the best-known transposable elements class and are broadly distributed through fish and also individual genomes, playing an important role in their evolutionary dynamics. Several agents can stress these elements; among them, there are some parasitic compounds such as the organochlorophosphate Trichlorfon. Consequently, knowing that the organochlorophosphate Trichlorfon is indiscriminately used as an antiparasitic in aquaculture, the current study aimed to analyze the effects of this compound on the activation of the Transposable Elements (TEs) Rex1, Rex3, and Rex6 and the structure of heterochromatin in the mitotic chromosomes of the tambaqui (Colossoma macropomum). For this, two concentrations of the pesticide were used: 30% (0.261 mg/L) and 50% (0.435 mg/L) of the recommended LC_{50–96 h} concentration (0.87 mg/L) for this fish species. The results revealed a dispersed distribution for Rex1 and Rex6 retroelements. Rex3 showed an increase in both marking intensity and distribution, as well as enhanced chromosomal heterochromatinization. This probably happened by the mediation of epigenetic adaptive mechanisms, causing the retroelement mobilization to be repressed. However, this behavior was most evident when Trichlorfon concentrations and exposure times were the greatest, reflecting the genetic flexibility necessary for this species to successfully adapt to environmental changes. Full article

A checklist of the native fishes of the Dhanu River and adjacent waters at Mithamain Upazila under the Kishoreganj district of Bangladesh is prepared with details on their availability, conservation status, habitat preferences, population trends, and threats. Data were collected monthly by field survey, focus group discussions, and personal interviews by using a semi-structured questionnaire and a pictorial check list of fish species. A total of 91 indigenous fish species of 59 genera belonging to 29 families under 11 orders were documented where 17.6%, 27.5%, 31.9%, and 23.1% species were abundantly available, commonly available, moderately available, and rarely available, respectively. Among those, 24 fish species (26.4%) were under the threatened category (3 critically endangered, 11 endangered, and 10 vulnerable) according to the IUCN Bangladesh. Notably, the globally threatened Cirrhinus cirrhosus, Channa orientalis, and Wallago attu were available in the study area. Fish population trends of 24.2% and 59.3% of the entire fish species were found in decreasing trends at the global and national level, respectively. The leading threats to the fish diversity were indiscriminate overfishing followed by fishing by dewatering of wetlands, the katha fishing method, the use of deprecated fishing gears, etc. Minimizing anthropogenic impacts, enacting fishing laws, installing and managing fish sanctuaries, and raising public awareness can be effective for the conservation of existing fisheries resources. Full article