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15 pages, 24657 KiB  
Article
Identification and Genetic Analysis of Downy Mildew Resistance in Intraspecific Hybrids of Vitis vinifera L.
by Xing Han, Yihan Li, Zhilei Wang, Zebin Li, Nanyang Li, Hua Li and Xinyao Duan
Plants 2025, 14(15), 2415; https://doi.org/10.3390/plants14152415 - 4 Aug 2025
Abstract
Downy mildew caused by Plasmopara viticola is an important disease in grape production, particularly in the highly susceptible, widely cultivated Vitis vinifera L. Breeding for disease resistance is an effective solution, and V. vinifera intraspecific crosses can yield progeny with both disease resistance [...] Read more.
Downy mildew caused by Plasmopara viticola is an important disease in grape production, particularly in the highly susceptible, widely cultivated Vitis vinifera L. Breeding for disease resistance is an effective solution, and V. vinifera intraspecific crosses can yield progeny with both disease resistance and high quality. To assess the potential of intraspecific recurrent selection in V. vinifera (IRSV) in improving grapevine resistance to downy mildew and to analyze the pattern of disease resistance inheritance, the disease-resistant variety Ecolly was selected as one of the parents and crossed with Cabernet Sauvignon, Marselan, and Dunkelfelder, respectively, creating three reciprocal combinations, resulting in 1657 hybrid F1 progenies. The primary results are as follows: (1) significant differences in disease resistance among grape varieties and, significant differences in disease resistance between different vintages of the same variety were found; (2) the leaf downy mildew resistance levels of F1 progeny of different hybrid combinations conformed to a skewed normal distribution and showed some maternal dominance; (3) the degree of leaf bulbous elevation was negatively correlated with the level of leaf downy mildew resistance, and the correlation coefficient with the level of field resistance was higher; (4) five progenies with higher levels of both field and in vitro disease resistance were obtained. Intraspecific hybridization can improve the disease resistance of offspring through super-parent genetic effects, and Ecolly can be used as breeding material for recurrent hybridization to obtain highly resistant varieties. Full article
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24 pages, 30837 KiB  
Article
A Transfer Learning Approach for Diverse Motion Augmentation Under Data Scarcity
by Junwon Yoon, Jeon-Seong Kang, Ha-Yoon Song, Beom-Joon Park, Kwang-Woo Jeon, Hyun-Joon Chung and Jang-Sik Park
Mathematics 2025, 13(15), 2506; https://doi.org/10.3390/math13152506 - 4 Aug 2025
Abstract
Motion-capture data provide high accuracy but are difficult to obtain, necessitating dataset augmentation. To our knowledge, no prior study has investigated few-shot generative models for motion-capture data that address both quality and diversity. We tackle the diversity loss that arises with extremely small [...] Read more.
Motion-capture data provide high accuracy but are difficult to obtain, necessitating dataset augmentation. To our knowledge, no prior study has investigated few-shot generative models for motion-capture data that address both quality and diversity. We tackle the diversity loss that arises with extremely small datasets (n ≤ 10) by applying transfer learning and continual learning to retain the rich variability of a larger pretraining corpus. To assess quality, we introduce MFMMD (Motion Feature-Based Maximum Mean Discrepancy)—a metric well-suited for small samples—and evaluate diversity with the multimodality metric. Our method embeds an Elastic Weight Consolidation (EWC)-based regularization term in the generator’s loss and then fine-tunes the limited motion-capture set. We analyze how the strength of this term influences diversity and uncovers motion-specific characteristics, revealing behavior that differs from that observed in image-generation tasks. The experiments indicate that the transfer learning pipeline improves generative performance in low-data scenarios. Increasing the weight of the regularization term yields higher diversity in the synthesized motions, demonstrating a marked uplift in motion diversity. These findings suggest that the proposed approach can effectively augment small motion-capture datasets with greater variety, a capability expected to benefit applications that rely on diverse human-motion data across modern robotics, animation, and virtual reality. Full article
(This article belongs to the Special Issue Deep Neural Networks: Theory, Algorithms and Applications)
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23 pages, 5939 KiB  
Article
Single-Nucleus Transcriptome Sequencing Unravels Physiological Differences in Holstein Cows Under Different Physiological States
by Peipei Li, Yaqiang Guo, Yanchun Bao, Caixia Shi, Lin Zhu, Mingjuan Gu, Risu Na and Wenguang Zhang
Genes 2025, 16(8), 931; https://doi.org/10.3390/genes16080931 (registering DOI) - 3 Aug 2025
Abstract
Background: Against the backdrop of the large-scale and intensive development of the livestock industry, enhancing the reproductive efficiency of cattle has become a crucial factor in industrial development. Holstein cows, as the most predominant dairy cattle breed globally, are characterized by high milk [...] Read more.
Background: Against the backdrop of the large-scale and intensive development of the livestock industry, enhancing the reproductive efficiency of cattle has become a crucial factor in industrial development. Holstein cows, as the most predominant dairy cattle breed globally, are characterized by high milk yield and excellent milk quality. However, their reproductive efficiency is comprehensively influenced by a variety of complex factors, and improving their reproductive performance faces numerous challenges. The ovary, as the core organ of the female reproductive system, plays a decisive role in embryonic development and pregnancy maintenance. It is not only the site where eggs are produced and developed but it also regulates the cow’s estrous cycle, ovulation process, and the establishment and maintenance of pregnancy by secreting various hormones. The normal functioning of the ovary is crucial for the smooth development of the embryo and the successful maintenance of pregnancy. Methods: Currently, traditional sequencing technologies have obvious limitations in deciphering ovarian function and reproductive regulatory mechanisms. To overcome the bottlenecks of traditional sequencing technologies, this study selected Holstein cows as the research subjects. Ovarian samples were collected from one pregnant and one non-pregnant Holstein cow, and single-nucleus transcriptome sequencing technology was used to conduct an in-depth study on the ovarian cells of Holstein cows. Results: By constructing a cell type-specific molecular atlas of the ovaries, nine different cell types were successfully identified. This study compared the proportions of ovarian cell types under different physiological states and found that the proportion of endothelial cells decreased during pregnancy, while the proportions of granulosa cells and luteal cells increased significantly. In terms of functional enrichment analysis, oocytes during both pregnancy and non-pregnancy play roles in the “cell cycle” and “homologous recombination” pathways. However, non-pregnant oocytes are also involved in the “progesterone-mediated oocyte maturation” pathway. Luteal cells during pregnancy mainly function in the “cortisol synthesis and secretion” and “ovarian steroidogenesis” pathways; non-pregnant luteal cells are mainly enriched in pathway processes such as the “AMPK signaling pathway”, “pyrimidine metabolism”, and “nucleotide metabolism”. Cell communication analysis reveals that there are 51 signaling pathways involved in the pregnant ovary, with endothelial cells, granulosa cells, and luteal cells serving as the core communication hubs. In the non-pregnant ovary, there are 48 pathways, and the interaction between endothelial cells and stromal cells is the dominant mode. Conclusions: This study provides new insights into the regulatory mechanisms of reproductive efficiency in Holstein cows. The differences in the proportions of ovarian cell types, functional pathways, and cell communication patterns under different physiological states, especially the increase in the proportions of granulosa cells and luteal cells during pregnancy and the specificity of related functional pathways, indicate that these cells play a crucial role in the reproductive process of cows. These findings also highlight the importance of ovarian cells in pathways such as “cell cycle”, “homologous recombination”, and “progesterone-mediated oocyte maturation”, as well as the cell communication mechanisms in regulating ovarian function and reproductive performance. Full article
(This article belongs to the Section Animal Genetics and Genomics)
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21 pages, 645 KiB  
Review
Vernalization of Winter Crops Increases Photosynthetic Energy Conversion Efficiency and Seed Yield
by Norman P. A. Hüner, Alexander G. Ivanov, Beth Szyszka-Mroz, Leon A. Bravo, Leonid V. Savitch and Marianna Krol
Plants 2025, 14(15), 2357; https://doi.org/10.3390/plants14152357 - 31 Jul 2025
Viewed by 252
Abstract
We summarize our present knowledge of the regulation of photostasis and photosynthetic performance versus photoprotection in response to vernalization and conclude that the enhanced photosynthetic performance of winter crops is due to an inherent increase in photosynthetic energy conversion efficiency induced by vernalization [...] Read more.
We summarize our present knowledge of the regulation of photostasis and photosynthetic performance versus photoprotection in response to vernalization and conclude that the enhanced photosynthetic performance of winter crops is due to an inherent increase in photosynthetic energy conversion efficiency induced by vernalization which translates into high seed yield in the field as well as under controlled environment conditions. This is consistent with the published data for enhanced photosynthetic performance of the only two extant terrestrial angiosperms, Colobanthus quitensis and Deschampsia antarctica, native to the frigid conditions of terrestrial Antarctica. The Cold Binding factor family of transcription factors (CBFs/DREBs) governs the enhanced photosynthetic performance of winter cereals as well as the Antarctic angiosperms. In contrast to winter crops, spring varieties survive cold environments by stimulating photoprotection at the expense of photosynthetic performance like that observed for green algae and cyanobacteria. Consequently, this minimizes the photosynthetic energy conversion efficiency of spring varieties and limits their seed yield upon cold acclimation. This review provides critical insights into the regulation of photostasis and the balance between photosynthetic performance and photoprotection in plants and how vernalization has enhanced photosynthetic energy conversion, which is essential for understanding plant adaptation to cold environments and optimizing agricultural productivity for improving crop resilience and yield in challenging climates. Full article
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17 pages, 1380 KiB  
Article
The Effect of Foliar Micronutrient Fertilization on Yield and Nutritional Quality of Maize Grain
by Wacław Jarecki, Ioana Maria Borza, Cristina Adriana Rosan, Cristian Gabriel Domuța and Simona Ioana Vicas
Agronomy 2025, 15(8), 1859; https://doi.org/10.3390/agronomy15081859 - 31 Jul 2025
Viewed by 185
Abstract
Foliar fertilization is an effective practice that improves both the yield and quality of maize, a crop with high and specific micronutrient demands. This study hypothesized that foliar application of Fe, Cu, Mn, Mo, Zn and B would improve grain size and quality [...] Read more.
Foliar fertilization is an effective practice that improves both the yield and quality of maize, a crop with high and specific micronutrient demands. This study hypothesized that foliar application of Fe, Cu, Mn, Mo, Zn and B would improve grain size and quality in GS210 maize compared to the control. The single-factor field experiment was conducted in 2023–2024 on Haplic Cambisol (Eutric) soil, under a variety of meteorological conditions. The application of Zn and B fertilizers significantly increased the soil plant analysis development (SPAD) index. Yield components (number of grains per ear, thousand-grain weight) and grain yield increased significantly following Zn foliar application compared to the control. Zn application increased grain yield by 0.59 t ha−1 and 0.49 t ha−1 in 2023 and 2024, respectively. Smaller but beneficial effects were observed with Cu and B applications. In contrast, the effects of fertilization with other micronutrients (Fe, Mn, Mo) were less pronounced than anticipated. Biochemical analyses revealed that foliar fertilization with Fe, Cu and Mo increased total phenolic content and antioxidant capacity, while Fe and Mo enhanced carotenoid accumulation, and Cu and B significantly influenced grain color parameters. The study highlights the potential of foliar fertilization to improve maize performance and grain quality, despite possible antagonisms between micronutrients. Full article
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16 pages, 494 KiB  
Article
Comparative Analysis of Yield and Grain-Filling Characteristics of Conventional Rice with Different Panicle Types in Response to Nitrogen Fertilization
by Nianbing Zhou, Tong Sun, Yanhong Zhang, Qiang Shi, Yu Zhou, Qiangqiang Xiong, Jinlong Hu, Shuai Wang and Jinyan Zhu
Agronomy 2025, 15(8), 1858; https://doi.org/10.3390/agronomy15081858 - 31 Jul 2025
Viewed by 164
Abstract
This study investigated the impact of nitrogen (N) fertilization on the yield and grain filling (GF) characteristics of two conventional japonica rice varieties with distinct panicle types: Yangchan 3501 (large-panicle: spikelets per panicle > 150) and Nangeng 46 (medium-panicle: [...] Read more.
This study investigated the impact of nitrogen (N) fertilization on the yield and grain filling (GF) characteristics of two conventional japonica rice varieties with distinct panicle types: Yangchan 3501 (large-panicle: spikelets per panicle > 150) and Nangeng 46 (medium-panicle: 100 < spikelets per panicle < 150). Field experiments were conducted over two growing seasons (2022–2023) with three N application rates (T1: 225 kg ha−1, T2: 270 kg ha−1, T3: 315 kg ha−1). Key measurements included tiller dynamics, panicle composition, GF parameters modeled using the Richards equation, and enzyme activities related to nitrogen metabolism (Fd-GOGAT, NR) and carbohydrate transport (α-amylase, SPS). Results showed that the yield increased with higher N levels for both varieties, with Yangchan 3501 achieving higher yields primarily through increased grains per panicle (15.65% rise under T3 vs. T1), while Nangeng 46 relied on panicle number (8.83% increase under T3 vs. T1). Nitrogen application enhanced Fd-GOGAT and NR activities, prolonging photosynthesis and improving GF rates, particularly in the inferior grains of Yangchan 3501 during middle and late stages. However, a high N reduced seed-setting rates and 1000-grain weight, with larger panicle types exhibiting a greater sensitivity to N-induced changes in branch structure and assimilate allocation. This study highlights that optimizing N management can improve nitrogen-metabolism enzyme activity and GF efficiency, especially in large-panicle rice, while medium-panicle types require higher N inputs to maximize panicle number. These findings provide actionable insights for achieving high yields and efficient nutrient use in conventional rice cultivation. Full article
(This article belongs to the Section Soil and Plant Nutrition)
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16 pages, 938 KiB  
Review
Enhancing Oil Content in Oilseed Crops: Genetic Insights, Molecular Mechanisms, and Breeding Approaches
by Guizhen Gao, Lu Zhang, Panpan Tong, Guixin Yan and Xiaoming Wu
Int. J. Mol. Sci. 2025, 26(15), 7390; https://doi.org/10.3390/ijms26157390 (registering DOI) - 31 Jul 2025
Viewed by 251
Abstract
Vegetable oils are essential for human nutrition and industrial applications. With growing global demand, increasing oil content in oilseed crops has become a top priority. This review synthesizes recent progress in understanding the genetic, environmental, and molecular mechanisms regulating oil content, and presents [...] Read more.
Vegetable oils are essential for human nutrition and industrial applications. With growing global demand, increasing oil content in oilseed crops has become a top priority. This review synthesizes recent progress in understanding the genetic, environmental, and molecular mechanisms regulating oil content, and presents biotechnological strategies to enhance oil accumulation in major oilseed crops. Oil biosynthesis is governed by intricate genetic–environmental interactions. Environmental factors and agronomic practices significantly impact oil accumulation dynamics. Quantitative trait loci (QTL) mapping and genome-wide association studies (GWAS) have identified key loci and candidate genes involved in lipid biosynthesis pathways. Transcription factors and epigenetic regulators further fine-tune oil accumulation. Biotechnological approaches, including marker-assisted selection (MAS) and CRISPR/Cas9-mediated genome editing, have successfully generated high-oil-content variants. Future research should integrate multi-omics data, leverage AI-based predictive breeding, and apply precision genome editing to optimize oil yield while maintaining seed quality. This review provides critical references for the genetic improvement and breeding of high- and ultra-high-oil-content varieties in oilseed crops. Full article
(This article belongs to the Special Issue Rapeseed: Genetic Breeding, Key Trait Mining and Genome)
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26 pages, 2467 KiB  
Article
Antioxidant and Nutrient Profile of Tomato Processing Waste from the Mixture of Indigenous Croatian Varieties: Influence of Drying and Milling
by Tea Petković, Emerik Galić, Kristina Radić, Nikolina Golub, Jasna Jablan, Maja Bival Štefan, Tihomir Moslavac, Karla Grudenić, Ivana Rumora Samarin, Tomislav Vinković and Dubravka Vitali Čepo
Appl. Sci. 2025, 15(15), 8447; https://doi.org/10.3390/app15158447 - 30 Jul 2025
Viewed by 139
Abstract
Tomato processing waste (TPW) represents a valuable but underutilized by-product of the food industry with potential for valorization within bioeconomy models. This study investigated the chemical composition, antioxidant profile, and sanitary safety of TPW, analyzing the whole TPW; its fractions (peels and seeds) [...] Read more.
Tomato processing waste (TPW) represents a valuable but underutilized by-product of the food industry with potential for valorization within bioeconomy models. This study investigated the chemical composition, antioxidant profile, and sanitary safety of TPW, analyzing the whole TPW; its fractions (peels and seeds) and oil are obtained from TPW seeds. All samples showed contaminant levels within regulatory limits, confirming their safety for further applications. Various drying methods (air-drying at 70 °C and at 50 °C, lyophilization and vacuum drying) and grinding intensities were evaluated to determine their impact on TPW bioactive compounds retention and organoleptic characteristics. TPW exhibited valuable nutritional properties, particularly high protein and dietary fiber content while TPW oil was characterized with high monounsaturated fatty acid content. Results demonstrated that drying method and particle size significantly influenced the yield of bioactive compound and organoleptic properties, with either lyophilization or vacuum drying and finer milling generally enhancing the recovery of polyphenols, β-carotene, and lycopene and improving color intensity. This research provides the first characterization of the TPW obtained from Croatian indigenous tomato varieties, establishing a scientific foundation for its sustainable valorization and, in broader terms, supporting circular economy objectives and contributing to more resource-efficient food systems. Full article
(This article belongs to the Special Issue Food Chemistry, Analysis and Innovative Production Technologies)
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18 pages, 853 KiB  
Article
Elucidating Genotypic Variation in Quinoa via Multidimensional Agronomic, Physiological, and Biochemical Assessments
by Samreen Nazeer and Muhammad Zubair Akram
Plants 2025, 14(15), 2332; https://doi.org/10.3390/plants14152332 - 28 Jul 2025
Viewed by 304
Abstract
Quinoa (Chenopodium quinoa Willd.) has emerged as a climate-resilient, nutrient-dense crop with increasing global popularity because of its adaptability under current environmental variations. To address the limited understanding of quinoa’s genotypic performance under local agro-environmental conditions, this study hypothesized that elite genotypes [...] Read more.
Quinoa (Chenopodium quinoa Willd.) has emerged as a climate-resilient, nutrient-dense crop with increasing global popularity because of its adaptability under current environmental variations. To address the limited understanding of quinoa’s genotypic performance under local agro-environmental conditions, this study hypothesized that elite genotypes would exhibit significant variation in agronomic, physiological, and biochemical traits. This study aimed to elucidate genotypic variability among 23 elite quinoa lines under field conditions in Faisalabad, Pakistan, using a multidimensional framework that integrated phenological, physiological, biochemical, root developmental, and yield-related attributes. The results revealed that significant variation was observed across all measured parameters, highlighting the diverse adaptive strategies and functional capacities among the tested genotypes. More specifically, genotypes Q4, Q11, Q15, and Q126 demonstrated superior agronomic potential and canopy-level physiological efficiencies, including high biomass accumulation, low infrared canopy temperatures and sustained NDVI values. Moreover, Q9 and Q52 showed enhanced accumulation of antioxidant compounds such as phenolics and anthocyanins, suggesting potential for functional food applications and breeding program for improving these traits in high-yielding varieties. Furthermore, root trait analysis revealed Q15, Q24, and Q82 with well-developed root systems, suggesting efficient resource acquisition and sufficient support for above-ground plant parts. Moreover, principal component analysis further clarified genotype clustering based on trait synergistic effects. These findings support the use of multidimensional phenotyping to identify ideotypes with high yield potential, physiological efficiency and nutritional value. The study provides a foundational basis for quinoa improvement programs targeting climate adaptability and quality enhancement. Full article
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14 pages, 2802 KiB  
Article
Interactions of Fe, Mn, Zn, and Cd in Soil–Rice Systems: Implications for Reducing Cd Accumulation in Rice
by Yan Zhang, Su Jiang, Han Wang, Linfei Yu, Chunfu Li, Liqun Ding and Guosheng Shao
Toxics 2025, 13(8), 633; https://doi.org/10.3390/toxics13080633 - 28 Jul 2025
Viewed by 389
Abstract
Cadmium (Cd) contamination in rice (Oryza sativa L.) poses serious health risks for human, necessitating effective mitigation strategies. This study investigated the effects of Cd stress on iron (Fe), manganese (Mn), zinc (Zn), and Cd accumulation and translocation in rice varieties with [...] Read more.
Cadmium (Cd) contamination in rice (Oryza sativa L.) poses serious health risks for human, necessitating effective mitigation strategies. This study investigated the effects of Cd stress on iron (Fe), manganese (Mn), zinc (Zn), and Cd accumulation and translocation in rice varieties with high (MY46) or low (ZS97B) Cd accumulation capacities grown in acidic and alkaline soils. Results demonstrated that Cd stress significantly inhibited plant growth, reducing plant height, shoot biomass, and grain yield in both soil types. Cd accumulation increased in roots, shoots, and grains, while Fe, Mn, and Zn concentrations decreased markedly. Molecular analysis revealed upregulation of metal transporter genes (OsIRT1, OsNRAMP1, OsNRAMP5) and the vacuolar sequestration gene (OsHMA3) in roots under Cd exposure. The translocation factor (TF) values of Mn and Zn from root to shoot were reduced in acidic soils, whereas Mn and Zn TFs exhibited an increasing trend in alkaline soils despite Cd exposure. Furthermore, correlation analyses indicated Mn and Zn play crucial roles in suppressing Cd accumulation in both acidic and alkaline soils. These findings provide critical insights for developing soil-specific strategies to reduce Cd accumulation in rice through micronutrient management. Full article
(This article belongs to the Section Metals and Radioactive Substances)
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19 pages, 5967 KiB  
Article
Chitosan Application Improves the Growth and Physiological Parameters of Tomato Crops
by Juan José Reyes-Pérez, Luis Tarquino Llerena-Ramos, Wilmer Tezara, Víctor Reynel, Luis Guillermo Hernández-Montiel and Antonio Juárez-Maldonado
Horticulturae 2025, 11(8), 878; https://doi.org/10.3390/horticulturae11080878 - 28 Jul 2025
Viewed by 306
Abstract
Tomato crops are treated with high concentrations of synthetic fertilizers and insecticides to increase yields, but the careless use of these chemicals harms the environment and human health and affects plant pathogen resistance. The effect of foliar spray of three concentrations of chitosan [...] Read more.
Tomato crops are treated with high concentrations of synthetic fertilizers and insecticides to increase yields, but the careless use of these chemicals harms the environment and human health and affects plant pathogen resistance. The effect of foliar spray of three concentrations of chitosan (500, 1000, and 2000 mg L−1) on plant growth, yield, fruit quality, and physiological performance in two tomato varieties (Floradade and Candela F1) was studied. Physiological traits such as photosynthesis, chlorophyll content, and leaf area index of the plants were positively affected by chitosan, an effective compound that biostimulates growth, with increases in biomass of organs with respect to the control treatment. Chitosan also improved tomato quality, such as increases in polyphenols, antioxidant capacity, flavonoids, carotenoids, vitamin C, and total soluble solids in both tomato varieties. Finally, yield increased by 76.4% and 65.4% in Floradade and Candela F1, respectively. The responses of tomato plants to chitosan application were different depending on the variety evaluated, indicating a differential response to the biostimulant. The use of chitosan in agriculture is a tool that has no negative effects on plants and the environment and can increase the productive capacity of tomato plants. Full article
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19 pages, 1940 KiB  
Article
Linkages Between Sorghum bicolor Root System Architectural Traits and Grain Yield Performance Under Combined Drought and Heat Stress Conditions
by Alec Magaisa, Elizabeth Ngadze, Tshifhiwa P. Mamphogoro, Martin P. Moyo and Casper N. Kamutando
Agronomy 2025, 15(8), 1815; https://doi.org/10.3390/agronomy15081815 - 26 Jul 2025
Viewed by 275
Abstract
Breeding programs often overlook the use of root traits. Therefore, we investigated the relevance of sorghum root traits in explaining its adaptation to combined drought and heat stress (CDHS). Six (i.e., three pre-release lines + three checks) sorghum genotypes were established at two [...] Read more.
Breeding programs often overlook the use of root traits. Therefore, we investigated the relevance of sorghum root traits in explaining its adaptation to combined drought and heat stress (CDHS). Six (i.e., three pre-release lines + three checks) sorghum genotypes were established at two low-altitude (i.e., <600 masl) locations with a long-term history of averagely very high temperatures in the beginning of the summer season, under two management (i.e., CDHS and well-watered (WW)) regimes. At each location, the genotypes were laid out in the field using a randomized complete block design (RCBD) replicated two times. Root trait data, namely root diameter (RD), number of roots (NR), number of root tips (NRT), total root length (TRL), root depth (RDP), root width (RW), width–depth ratio (WDR), root network area (RNA), root solidity (RS), lower root area (LRA), root perimeter (RP), root volume (RV), surface area (SA), root holes (RH) and root angle (RA) were gathered using the RhizoVision Explorer software during the pre- and post-flowering stage of growth. RSA traits differentially showed significant (p < 0.05) correlations with grain yield (GY) at pre- and post-flowering growth stages and under CDHS and WW conditions also revealing genotypic variation estimates exceeding 50% for all the traits. Regression models varied between pre-flowering (p = 0.013, R2 = 47.15%, R2 Predicted = 29.32%) and post-flowering (p = 0.000, R2 = 85.64%, R2 Predicted = 73.30%) growth stages, indicating post-flowering as the optimal stage to relate root traits to yield performance. RD contributed most to the regression model at post-flowering, explaining 51.79% of the 85.64% total variation. The Smith–Hazel index identified ICSV111IN and ASAREACA12-3-1 as superior pre-release lines, suitable for commercialization as new varieties. The study demonstrated that root traits (in particular, RD, RW, and RP) are linked to crop performance under CDHS conditions and should be incorporated in breeding programs. This approach may accelerate genetic gains not only in sorghum breeding programs, but for other crops, while offering a nature-based breeding strategy for stress adaptation in crops. Full article
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18 pages, 3361 KiB  
Article
Model-Based Assessment of Phenological and Climate Suitability Dynamics for Winter Wheat in the 3H Plain Under Future Climate Scenarios
by Yifei Xu, Te Li, Min Xu, Shuanghe Shen and Ling Tan
Agriculture 2025, 15(15), 1606; https://doi.org/10.3390/agriculture15151606 - 25 Jul 2025
Viewed by 249
Abstract
Understanding future changes in crop phenology and climate suitability is essential for sustaining winter wheat production in the Huang-Huai-Hai (3H) Plain under climate change. This study integrates bias-corrected CMIP6 climate projections, the DSSAT CERES-Wheat crop model, and Random Forest analysis to assess spatiotemporal [...] Read more.
Understanding future changes in crop phenology and climate suitability is essential for sustaining winter wheat production in the Huang-Huai-Hai (3H) Plain under climate change. This study integrates bias-corrected CMIP6 climate projections, the DSSAT CERES-Wheat crop model, and Random Forest analysis to assess spatiotemporal shifts in winter wheat phenology and climate suitability. The assessment focuses on the mid- (2041–2060) and late 21st century (2081–2100) under the SSP2-4.5 and SSP5-8.5 scenarios. The results indicate that the vegetative and whole growing periods (VGP and WGP) will be extended in the mid-century but shorten by the late century. In contrast, the reproductive growing period (RGP) will be slightly reduced in the mid-century and extended under high emissions in the late century. Temperature suitability is projected to increase during the VGP and WGP but decline during the RGP. Precipitation suitability generally improves, except for a decrease during the reproductive period south of 32° N. Solar radiation suitability is expected to decline across all stages. Temperature is identified as the primary driver of phenological changes, with solar radiation and precipitation playing increasingly important roles in the mid- and late 21st century, respectively. Adaptive strategies, including the adoption of heat-tolerant varieties, longer reproductive periods, and earlier sowing, are recommended to enhance yield stability under future climate conditions. Full article
(This article belongs to the Section Ecosystem, Environment and Climate Change in Agriculture)
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20 pages, 1767 KiB  
Article
Rhizobium Inoculation Sustains Optimal Yields on Native Common Bean (Phaseolus vulgaris L.) Under Nitrogen-Deficient Fertilization
by Danny Jarlis Vásquez Lozano, Cledy Ureta Sierra, Joseph Campos Ruiz, Héctor Andrés Ramírez Maguiña, Azucena Chávez-Collantes, Leslie Diana Velarde-Apaza, Richard Solórzano and Attilio Israel Cadenillas Martínez
Crops 2025, 5(4), 47; https://doi.org/10.3390/crops5040047 - 25 Jul 2025
Viewed by 277
Abstract
Native bean genotypes (Phaseolus vulgaris L.) play a crucial role in ensuring food security in the Andean region. However, their cultivation faces challenges, such as low yields and a high dependence on nitrogen fertilizers. Addressing these issues requires the development of sustainable [...] Read more.
Native bean genotypes (Phaseolus vulgaris L.) play a crucial role in ensuring food security in the Andean region. However, their cultivation faces challenges, such as low yields and a high dependence on nitrogen fertilizers. Addressing these issues requires the development of sustainable strategies to enhance productivity. This study evaluated the interaction between Rhizobium phaseoli inoculation and three levels of phosphorus (P) and potassium (K) fertilization on the growth, yield, and nutritional profile of the ‘Tiachos bayo’ native bean variety under Andean field conditions. Two R. phaseoli strains (UNC-1 and CIAT-2) were tested in combination with three levels of chemical fertilization (0%, 50%, and 100%) using a factorial design under field conditions. Parameters assessed included nodule number, plant height, phenology, yield, and proximal grain composition. Results indicated that inoculation and fertilization levels significantly influenced nodulation, phenological phases, and crop yield. The highest yield (2172 kg·ha−1) and nodule number (78) were observed with the combined treatment of R. phaseoli CIAT-2 strain with 100% fertilization. It was concluded that R. phaseoli inoculation, when integrated with appropriate fertilization, enhances the productivity of native beans. Full article
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24 pages, 9486 KiB  
Article
StMAPKK1 Enhances Thermotolerance in Potato (Solanum tuberosum L.) by Enhancing Antioxidant Defense and Photosynthetic Efficiency Under Heat Stress
by Xi Zhu, Yasir Majeed, Kaitong Wang, Xiaoqin Duan, Nengkang Guan, Junfu Luo, Haifei Zheng, Huafen Zou, Hui Jin, Zhuo Chen and Yu Zhang
Plants 2025, 14(15), 2289; https://doi.org/10.3390/plants14152289 - 24 Jul 2025
Viewed by 281
Abstract
The functional role of MAPKK genes in potato (Solanum tuberosum L.) under high-temperature stress remains unexplored, despite their critical importance in stress signaling and yield protection. We characterized StMAPKK1, a novel group D MAPKK localized to plasma membrane/cytoplasm. Quantitative real-time polymerase chain [...] Read more.
The functional role of MAPKK genes in potato (Solanum tuberosum L.) under high-temperature stress remains unexplored, despite their critical importance in stress signaling and yield protection. We characterized StMAPKK1, a novel group D MAPKK localized to plasma membrane/cytoplasm. Quantitative real-time polymerase chain reaction (qRT-PCR) revealed cultivar-specific upregulation in potato (‘Atlantic’ and ‘Desiree’) leaves under heat stress (25 °C, 30 °C, and 35 °C). Transgenic lines overexpressing (OE) StMAPKK1 exhibited elevated antioxidant enzyme activity, including ascorbate peroxidase (APX), catalase (CAT), superoxide dismutase (SOD), and peroxidase (POD), mitigating oxidative damage. Increased proline and chlorophyll accumulation and reduced oxidative stress markers, hydrogen peroxide (H2O2) and malondialdehyde (MDA), indicate improved cellular redox homeostasis. The upregulation of key antioxidant and heat stress-responsive genes (StAPX, StCAT1/2, StPOD12/47, StFeSOD2/3, StMnSOD, StCuZnSOD1/2, StHSFA3 and StHSP20/70/90) strengthened the enzymatic defense system, enhanced thermotolerance, and improved photosynthetic efficiency, with significant improvements in net photosynthetic rate (Pn), transpiration rate (E), and stomatal conductance (Gs) under heat stress (35 °C) in StMAPKK1-OE plants. Superior growth and biomass (plant height, plant and its root fresh and dry weights, and tuber yield) accumulation, confirming the positive role of StMAPKK1 in thermotolerance. Conversely, RNA interference (RNAi)-mediated suppression of StMAPKK1 led to a reduction in enzymatic activity, proline content, and chlorophyll levels, exacerbating oxidative stress. Downregulation of antioxidant-related genes impaired ROS scavenging capacity and declines in photosynthetic efficiency, growth, and biomass, accompanied by elevated H2O2 and MDA accumulation, highlighting the essential role of StMAPKK1 in heat stress adaptation. These findings highlight StMAPKK1’s potential as a key genetic target for breeding heat-tolerant potato varieties, offering a foundation for improving crop resilience in warming climates. Full article
(This article belongs to the Special Issue Cell Physiology and Stress Adaptation of Crops)
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