Search Results (32)

In the mid-twentieth century, the solid waste generated was mostly made of biodegradable materials. However, the invention of plastic and its widespread use have led to a staggering accumulation of plastic in the environment, posing a severe threat to the biosphere. The environmental degradation of plastic can take thousands of years and poses a significant concern for environmental and human health. Until recently, it was thought that some plastics were non-biodegradable; however, there are microorganisms capable of degrading both plastics derived from fossil resources and those from biomass or renewable resources. This review aims to highlight the impact of plastic waste on the environment and the biosphere, as well as the great taxonomic diversity of microorganisms potentially linked to plastic degradation. Research in plastic biodegradability includes the identification of bacteria, fungi, archaea, and algae from virtually any environment: soil, atmosphere, landfills, freshwater, seawater, marine sediments, rumen, and waxworm guts. Identifying microbial consortia that degrade plastic and improving their degrading activity could shorten the plastic degradation time and reduce its uncontrolled accumulation around the globe. Research in this field is vital for advancing biodegradable plastics and elucidating the potential and limitations of microbial degradation as a large-scale approach to plastic pollution. Full article

Diatomaceous earth (DE) consists of fossilized remnants of diatoms, which are marine or freshwater unicellular algae. Most DEs originate from fossilized sedimentary layers of diatoms deposited in water bodies during the Eocene and Miocene periods, much more than 20 million years ago. Processed DE, a soft, chalky powder, is widely used as an insecticide due to the highly absorptive and abrasive nature of its particles. As an insecticide, DE removes the wax coating of the insect epicuticle, the primary barrier against water loss. This results in water evaporation, leading to desiccation and death of the targeted insects. This review emphasizes the co-treatment of DEs with biological agents that have insecticidal properties (e.g., essential oils, plant powders, silica gel, and species/isolates of fungi), reducing the quantities used in single-application treatments and suggesting paths for the sustainable management of insects damaging stored products. Full article

Land use change is associated with both higher fossil fuel usage and global cement production, significantly impacting environmental sustainability. Cement dust emission is the third-largest source of anthropogenic CO₂ emissions, right behind fossil fuel usage due to intense agricultural practices like aggressive tillage management. This study’s aim is to determine cement dust emissions impacts on various tillage management methods and the formation of cement dust-affected CO₂ emissions, soil pH, soil organic matter content, total nitrogen content, available phosphorus, CaCO₃ content, bacteria and fungi populations, and enzyme activities. The target of this study is to evaluate how cement dust emissions impact the soil properties and sustainability of different tillage practices. Composite soils from wheat–sugar beet (potato)–fallow cropping sequences under conventional tillage (CT) and no-till (NT) management were collected (0–30 cm depth) with three replications at varying distances from a cement factory (1, 2, 4, 6, 8, and 10 km). To find differences among individual treatments and distances, a two-way ANOVA was employed along with Duncan’s LSD test comparing the various effects of tillage techniques. The associations between soil chemical and biological properties and CO₂ fluxes under the impact of cement dust were examined using Pearson’s correlation analysis. There were notable relationships between soil microbial population, enzyme activities, pH, CaCO₃, and CO₂ fluxes. The sampling distance from the cement plant had a substantial correlation with soil organic carbon, urease activity, pH, CaCO₃, and bacterial populations. According to the study, different tillage methods (CT and NT) affected the diversity and abundance of microorganisms within the soil ecosystem. CT was more beneficial for the microbial population and for sustainable management. Full article

Basic inventory is required for proper understanding and utilization of Earth’s natural resources, especially with increasing soil degradation and species loss. Soil carbon is newly refined at >30,000 Gt C (gigatonnes C), ten times above prior totals. Soil organic carbon (SOC) is up to 24,000 Gt C, plus plant stocks at ~2400 Gt C, both above- and below-ground, hold >99% of Earth’s biomass. On a topographic surface area of 25 Gha with mean 21 m depth, Soil has more organic carbon than all trees, seas, fossil fuels, or the Atmosphere combined. Soils are both the greatest biotic carbon store and the most active CO₂ source. Values are raised considerably. Disparity is due to lack of full soil depth survey, neglect of terrain, and other omissions. Herein, totals for mineral soils, Permafrost, and Peat (of all forms and ages), are determined to full depth (easily doubling shallow values), then raised for terrain that is ignored in all terrestrial models (doubling most values again), plus SOC in recalcitrant glomalin (+25%) and friable saprock (+26%). Additional factors include soil inorganic carbon (SIC some of biotic origin), aquatic sediments (SeOC), and dissolved fractions (DIC/DOC). Soil biota (e.g., forests, fungi, bacteria, and earthworms) are similarly upgraded. Primary productivity is confirmed at >220 Gt C/yr on land supported by Barrow’s “bounce” flux, C/O isotopes, glomalin, and Rubisco. Priority issues of species extinction, humic topsoil loss, and atmospheric CO₂ are remedied by SOC restoration and biomass recycling via (vermi-)compost for 100% organic husbandry under Permaculture principals, based upon the Scientific observation of Nature. Full article

Biotechnology is increasingly being used as a tool to replace traditional production methods due to concerns about the increasing damage caused by global warming. Bacteria, yeasts, fungi, and microalgae are microorganisms able to transform residues into value-added bioproducts. They produce microbial biomass that can result in the production of several products, such as biofuels, microbial proteins, fatty acids, bioactive polysaccharides, carotenoids, industrial enzymes, polyhydroxyalkanoates, and biofertilizers, among others. To improve microbial biomass and lipid yield, modern genetic engineering techniques can be applied as a way of optimizing processes and conditions. This review aims to explore the latest trends and technological advances in microbial biomass and lipid production, including optimization strategies for cultivation conditions and the use of genetic engineering to enhance yields and efficiency. It also discusses the challenges and future prospects for scaling up production for industrial applications. The potential of microbial lipids to contribute to a sustainable bioeconomy, as well as their applications in renewable energy and food industries, underscores their importance in a world increasingly seeking alternatives to fossil fuel dependence and unsustainable agricultural practices. Full article

The environmental impacts of the postindustrial era, which rely on fossil fuels, have compelled a reconsideration of the future of energy and chemical industries. Fungi are a valuable resource for improving a circular economy through the enhanced valorization of biomass and plant waste. They harbor a great diversity of oxidative enzymes, especially in their secretome. Enzymatic breakdown of the plant cell wall complex and lignocellulosic biomass yields sugars for fermentation and biofuel production, as well as aromatic compounds from lignin that can serve as raw materials for the chemical industry. To harness the biocatalytic potential, it is essential to identify and explore wild-type fungi and their secretomes. This study successfully combined genome mining and activity screening to uncover the oxidative potential of a collection of underexploited ascomycetes and basidiomycetes. The heme peroxidase and laccase activities of four promising candidates, Bipolaris victoriae, Colletotrichum sublineola, Neofusicoccum parvum and Moesziomyces antarcticus, were investigated to gain a deeper insight into their enzyme secretion. Furthermore, a plant-based medium screening with the phytopathogen C. sublineola revealed that soybean meal is a beneficial component to trigger the production and secretion of enzymes that catalyze H₂O₂-dependent oxidations. These results demonstrate that understanding fungal secretomes and their enzymatic potential opens exciting avenues for sustainable biotechnological applications across various industries. Full article

Bioethanol is the most commonly used biofuel. It is an alternative to replace fossil fuels in renewable energy; it can be produced from lignocellulosic feedstock using a biotechnological process. Their participation of microorganisms is crucial in the bioconversion process of fermentation for ethanol production and can involve bacteria, fungi, and yeasts. However, when working within bioethanol processes from lignocellulose feedstock, microorganisms face some challenges, such as high temperature, high solids content, and the ability to ferment sugars for high ethanol concentration. Such challenges will depend on operative strategies, such as simultaneous saccharification and fermentation, separate hydrolysis and fermentation, semi-simultaneous saccharification and fermentation, and consolidated bioprocessing; these are the most common configurations. This review presents different trends of the microbial role, biochemical application, and fermentation operative strategies for bioethanol production of the second generation. Full article

Industrial evolution and agricultural expansion, explained by continuing population growth, have rendered enormous problems for the world throughout the past few decades, primarily because of waste generation. To reduce environmental impact and dependence on fossil fuels, scientists have explored replacing synthetic polymers with environmentally friendly and sustainable alternatives in many emergent applications. In this regard, microbial biopolymers have gained special attention. Many biopolymers originating from various strains of bacteria, fungi, and algae have been reported and their possible applications have increased rapidly. This review focuses on the wide range of microbial biopolymers, their characteristics, and factors influencing their production. The present study also describes the environmental applications of microbial biopolymers. The use of these biopolymers is very attractive as a value-added and sustainable approach to wastewater treatment. By acting as adsorbents, coagulants, and flocculants as well as filters in membrane processes, microbial biopolymers shine as promising solutions beyond conventional methods. They can be integrated into various stages of the treatment process, further enhancing the efficiency of wastewater treatment methods. Microbial biopolymer applications in bioremediation and soil stabilization are also reviewed. Several studies have demonstrated the strong potential of biopolymers in soil improvement due to their ability to minimize permeability, eliminate heavy metals, stabilize soil, and limit erosion. Challenges related to scaling up and the downstream processing of microbial biopolymers, as well as its future perspectives in environmental applications, are also discussed. Full article

Wood-rotting fungi’s degradation of wood not only facilitates the eco-friendly treatment of organic materials, decreasing environmental pollution, but also supplies crucial components for producing biomass energy, thereby reducing dependence on fossil fuels. The ABC gene family, widely distributed in wood-rotting fungi, plays a crucial role in the metabolism of lignin, cellulose, and hemicellulose. Trametes gibbosa, as a representative species of wood-rotting fungi, exhibits robust capabilities in wood degradation. To investigate the function of the ABC gene family in wood degradation by T. gibbosa, we conducted a genome-wide analysis of T. gibbosa’s ABC gene family. We identified a total of 12 Tg-ABCs classified into four subfamilies (ABCA, ABCB, ABCC, and ABCG). These subfamilies likely play significant roles in wood degradation. Scaffold localization and collinearity analysis results show that Tg-ABCs are dispersed on scaffolds and there is no duplication of gene sequences in the Tg-ABCs in the genome sequence of T. gibbosa. Phylogenetic and collinearity analyses of T. gibbosa along with four other wood-rotting fungi show that T. gibbosa shares a closer phylogenetic relationship with its same-genus fungus (Trametes versicolor), followed by Ganoderma leucocontextum, Laetiporus sulphureus, and Phlebia centrifuga in descending order of phylogenetic proximity. In addition, we conducted quantitative analyses of Tg-ABCs from T. gibbosa cultivated in both woody and non-woody environments for 10, 15, 20, 25, 30, and 35 days using an RT-qPCR analysis. The results reveal a significant difference in the expression levels of Tg-ABCs between woody and non-woody environments, suggesting an active involvement of the ABC gene family in wood degradation. During the wood degradation period of T. gibbosa, spanning from 10 to 35 days, the relative expression levels of most Tg-ABCs exhibited a trend of increasing, decreasing, and then increasing again. Additionally, at 20 and 35 days of wood degradation by T. gibbosa, the relative expression levels of Tg-ABCs peak, suggesting that at these time points, Tg-ABCs exert the most significant impact on the degradation of poplar wood by T. gibbosa. This study systematically reveals the biological characteristics of the ABC gene family in T. gibbosa and their response to woody environments. It establishes the foundation for a more profound comprehension of the wood-degradation mechanism of the ABC gene family and provides strong support for the development of more efficient wood-degradation strategies. Full article

Evidence from molecular studies indicates that myxomycetes (also called myxogastrids or plasmodial slime molds) have a long evolutionary history, and the oldest known fossil is from the mid-Cretaceous. However, they were not “discovered” until 1654, when a brief description and a woodcut depicting what is almost certainly the common species Lycogala epidendrum was published. First thought to be fungi, myxomycetes were not universally recognized as completely distinct until well into the twentieth century. Biodiversity surveys for the group being carried out over several years are relatively recent, with what is apparently the first example being carried out in the 1930s. Beginning in the 1980s, a series of such surveys yielded large bodies of data on the occurrence and distribution of myxomycetes in terrestrial ecosystems. The most notable of these were the All Taxa Biodiversity Inventory (ATBI) project carried out in the Great Smoky Mountains National Park, the Planetary Biodiversity Inventory Project (PBI) carried out in localities throughout the world, and the Myxotropic project being carried out throughout the Neotropics. The datasets available from both past and ongoing surveys now allow global and biogeographical patterns of myxomycetes to be assessed for the first time. Full article

Plant biomass is one of the most abundant renewable carbon sources, which holds great potential for replacing current fossil-based production of fuels and chemicals. In nature, fungi can efficiently degrade plant polysaccharides by secreting a broad range of carbohydrate-active enzymes (CAZymes), such as cellulases, hemicellulases, and pectinases. Due to the crucial role of plant biomass-degrading (PBD) CAZymes in fungal growth and related biotechnology applications, investigation of their genomic diversity and transcriptional dynamics has attracted increasing attention. In this project, we systematically compared the genome content of PBD CAZymes in six taxonomically distant species, Aspergillus niger, Aspergillus nidulans, Penicillium subrubescens, Trichoderma reesei, Phanerochaete chrysosporium, and Dichomitus squalens, as well as their transcriptome profiles during growth on nine monosaccharides. Considerable genomic variation and remarkable transcriptomic diversity of CAZymes were identified, implying the preferred carbon source of these fungi and their different methods of transcription regulation. In addition, the specific carbon utilization ability inferred from genomics and transcriptomics was compared with fungal growth profiles on corresponding sugars, to improve our understanding of the conversion process. This study enhances our understanding of genomic and transcriptomic diversity of fungal plant polysaccharide-degrading enzymes and provides new insights into designing enzyme mixtures and metabolic engineering of fungi for related industrial applications. Full article

Fumaric acid is used in various areas of the chemical industry due to its functional groups. For example, it is used in the polymer industry to produce unsaturated polyester resins, which are nowadays mostly produced from fossil raw materials. With regard to sustainable biotechnological fumaric acid production, the main challenge is to develop a cost-effective and robust fermentation process with industrially relevant final titers, productivities and yields. For biotechnological fumaric acid production, mainly fungi of the genus Rhizopus are used, which require very complex and challenging morphology control. The aim of this work is the development of an effective biotechnological fumaric acid production process with R. arrhizus NRRL 1526. Significant insights into the morphology control of the fungus and optimization of production characteristics were obtained, and a final titer of 86.3 g/L fumaric acid was achieved in a batch cultivation, with a yield of 0.67 g/g and a productivity of 0.60 g/(L∙h). In addition, a fed-batch process was developed, in which the production phase was extended, and a maximum final titer of 195.4 g/L fumaric acid was achieved. According to current knowledge, this value is the highest final concentration of fumaric acid produced using biotechnology. Full article

After decades of utilization of fossil-based and environmentally hazardous compounds for wood preservation against fungal attack, there is a strong need to substitute those compounds with bio-based bioactive solutions, such as essential oils. In this work, lignin nanoparticles containing four essential oils from thyme species (Thymus capitatus, Coridothymus capitatus, T. vulgaris, and T. vulgaris Demeter) were applied as biocides in in vitro experiments to test their anti-fungal effect against two white-rot fungi (Trametes versicolor and Pleurotus ostreatus) and two brown-rot fungi (Poria monticola and Gloeophyllum trabeum). Entrapment of essential oils provided a delayed release over a time frame of 7 days from the lignin carrier matrix and resulted in lower minimum inhibitory concentrations of the essential oils against the brown-rot fungi (0.30–0.60 mg/mL), while for the white-rot fungi, identical concentrations were determined compared with free essential oils (0.05–0.30 mg/mL). Fourier Transform infrared (FTIR) spectroscopy was used to assess the fungal cell wall changes in the presence of essential oils in the growth medium. The results regarding brown-rot fungi present a promising approach for a more effective and sustainable utilization of essential oils against this class of wood-rot fungi. In the case of white-rot fungi, lignin nanoparticles, as essential oils delivery vehicles, still need optimization in their efficacy. Full article

Biorefinery has emerged in recent years as an alternative to petrorefinery, as biofuels have all the potential to replace fossil fuels for the sustainable development of human society. From this aspect, lignocellulosic biomasses are the most important, since these are the most abundant ubiquitous most raw material on earth, which can be converted into biofuels such as bioethanol, biobutanol, biohydrogen, biogas, etc. There are several strategies for conversion, such as biochemical, thermochemical, and microbial conversions of biomasses to biofuels; however, each of the strategies has its own consequences. Enzymatic conversion of biomasses into sugars, and thereby into bioethanol, is considered as the most sustainable way. However, biomass recalcitrance to enzymatic hydrolysis is the biggest challenge, as cellulose, hemicellulose, and lignin are intricately attached to each other making their separation a tedious task. Pretreatment is necessary to partially remove or change the form of lignin to make cellulose and hemicellulose accessible to enzymes. Most of the pretreatment methods are designed to target lignin, as it is the major component responsible for recalcitrance nature of biomasses. Laccase is a versatile lignin-degrading or lignin-modifying enzyme which is secreted by filamentous fungi and bacteria, and is reported for the biological pretreatment of biomasses, which is the most sustainable way of pretreatment. However, the rate of the reaction is extremely slow making it less attractive. This article will give an insight into the biorefinery of biomasses, with the special significance to laccase. Full article

The evolution of carnivorous fungi in deep time is still poorly understood as their fossil record is scarce. The approximately 100-million-year-old Cretaceous Palaeoanellus dimorphus is the earliest fossil of carnivorous fungi ever discovered. However, its accuracy and ancestral position has been widely questioned because no similar species have been found in modern ecosystems. During a survey of carnivorous fungi in Yunnan, China, two fungal isolates strongly morphologically resembling P. dimorphus were discovered and identified as a new species of Arthrobotrys (Orbiliaceae, Orbiliomycetes), a modern genus of carnivorous fungi. Phylogenetically, Arthrobotrys blastospora sp. nov. forms a sister lineage to A. oligospora. A. blastospora catches nematodes with adhesive networks and produces yeast-like blastospores. This character combination is absent in all other previously known modern carnivorous fungi but is strikingly similar to the Cretaceous P. dimorphus. In this paper, we describe A. blastospora in detail and discuss its relationship to P. dimorphus. Full article