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20 pages, 1801 KiB  
Article
Territorially Stratified Modeling for Sustainable Management of Free-Roaming Cat Populations in Spain: A National Approach to Urban and Rural Environmental Planning
by Octavio P. Luzardo, Ruth Manzanares-Fernández, José Ramón Becerra-Carollo and María del Mar Travieso-Aja
Animals 2025, 15(15), 2278; https://doi.org/10.3390/ani15152278 - 4 Aug 2025
Abstract
This study presents the scientific and methodological foundation of Spain’s first national framework for the ethical management of community cat populations: the Action Plan for the Management of Community Cat Colonies (PACF), launched in 2025 under the mandate of Law 7/2023. This pioneering [...] Read more.
This study presents the scientific and methodological foundation of Spain’s first national framework for the ethical management of community cat populations: the Action Plan for the Management of Community Cat Colonies (PACF), launched in 2025 under the mandate of Law 7/2023. This pioneering legislation introduces a standardized, nationwide obligation for trap–neuter–return (TNR)-based management of free-roaming cats, defined as animals living freely, territorially attached, and with limited socialization toward humans. The PACF aims to support municipalities in implementing this mandate through evidence-based strategies that integrate animal welfare, biodiversity protection, and public health objectives. Using standardized data submitted by 1128 municipalities (13.9% of Spain’s total), we estimated a baseline population of 1.81 million community cats distributed across 125,000 colonies. These data were stratified by municipal population size and applied to national census figures to generate a model-ready demographic structure. We then implemented a stochastic simulation using Vortex software to project long-term population dynamics over a 25-year horizon. The model integrated eight demographic–environmental scenarios defined by a combination of urban–rural classification and ecological reproductive potential based on photoperiod and winter temperature. Parameters included reproductive output, mortality, sterilization coverage, abandonment and adoption rates, stochastic catastrophic events, and territorial carrying capacity. Under current sterilization rates (~20%), our projections indicate that Spain’s community cat population could surpass 5 million individuals by 2050, saturating ecological and social thresholds within a decade. In contrast, a differentiated sterilization strategy aligned with territorial reproductive intensity (50% in most areas, 60–70% in high-pressure zones) achieves population stabilization by 2030 at approximately 1.5 million cats, followed by a gradual long-term decline. This scenario prioritizes feasibility while substantially reducing reproductive output, particularly in rural and high-intensity contexts. The PACF combines stratified demographic modeling with spatial sensitivity, offering a flexible framework adaptable to local conditions. It incorporates One Health principles and introduces tools for adaptive management, including digital monitoring platforms and standardized welfare protocols. While ecological impacts were not directly assessed, the proposed demographic stabilization is designed to mitigate population-driven risks to biodiversity and public health without relying on lethal control. By integrating legal mandates, stratified modeling, and realistic intervention goals, this study outlines a replicable and scalable framework for coordinated action across administrative levels. It exemplifies how national policy can be operationalized through data-driven, territorially sensitive planning tools. The findings support the strategic deployment of TNR-based programs across diverse municipal contexts, providing a model for other countries seeking to align animal welfare policy with ecological planning under a multi-level governance perspective. Full article
(This article belongs to the Section Animal System and Management)
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22 pages, 2666 KiB  
Article
Comparative Proteomic Analysis of Flammulina filiformis Reveals Substrate-Specific Enzymatic Strategies for Lignocellulose Degradation
by Weihang Li, Jiandong Han, Hongyan Xie, Yi Sun, Feng Li, Zhiyuan Gong and Yajie Zou
Horticulturae 2025, 11(8), 912; https://doi.org/10.3390/horticulturae11080912 (registering DOI) - 4 Aug 2025
Abstract
Flammulina filiformis, one of the most delicious and commercially important mushrooms, demonstrates remarkable adaptability to diverse agricultural wastes. However, it is unclear how different substrates affect the degradation of lignocellulosic biomass and the production of lignocellulolytic enzymes in F. filiformis. In [...] Read more.
Flammulina filiformis, one of the most delicious and commercially important mushrooms, demonstrates remarkable adaptability to diverse agricultural wastes. However, it is unclear how different substrates affect the degradation of lignocellulosic biomass and the production of lignocellulolytic enzymes in F. filiformis. In this study, label-free comparative proteomic analysis of F. filiformis cultivated on sugarcane bagasse, cotton seed shells, corn cobs, and glucose substrates was conducted to identify degradation mechanism across various substrates. Label-free quantitative proteomics identified 1104 proteins. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway analysis of protein expression differences were predominantly enriched in energy metabolism and carbohydrate metabolic pathways. Detailed characterization of carbohydrate-active enzymes among the identified proteins revealed glucanase (GH7, A0A067NSK0) as the key enzyme. F. filiformis secreted higher levels of cellulases and hemicellulases on sugarcane bagasse substrate. In the cotton seed shells substrate, multiple cellulases functioned collaboratively, while in the corn cobs substrate, glucanase predominated among the cellulases. These findings reveal the enzymatic strategies and metabolic flexibility of F. filiformis in lignocellulose utilization, providing novel insights for metabolic engineering applications in biotechnology. The study establishes a theoretical foundation for optimizing biomass conversion and developing innovative substrates using targeted enzyme systems. Full article
(This article belongs to the Special Issue Advances in Propagation and Cultivation of Mushroom)
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26 pages, 1033 KiB  
Article
Internet of Things Platform for Assessment and Research on Cybersecurity of Smart Rural Environments
by Daniel Sernández-Iglesias, Llanos Tobarra, Rafael Pastor-Vargas, Antonio Robles-Gómez, Pedro Vidal-Balboa and João Sarraipa
Future Internet 2025, 17(8), 351; https://doi.org/10.3390/fi17080351 - 1 Aug 2025
Viewed by 148
Abstract
Rural regions face significant barriers to adopting IoT technologies, due to limited connectivity, energy constraints, and poor technical infrastructure. While urban environments benefit from advanced digital systems and cloud services, rural areas often lack the necessary conditions to deploy and evaluate secure and [...] Read more.
Rural regions face significant barriers to adopting IoT technologies, due to limited connectivity, energy constraints, and poor technical infrastructure. While urban environments benefit from advanced digital systems and cloud services, rural areas often lack the necessary conditions to deploy and evaluate secure and autonomous IoT solutions. To help overcome this gap, this paper presents the Smart Rural IoT Lab, a modular and reproducible testbed designed to replicate the deployment conditions in rural areas using open-source tools and affordable hardware. The laboratory integrates long-range and short-range communication technologies in six experimental scenarios, implementing protocols such as MQTT, HTTP, UDP, and CoAP. These scenarios simulate realistic rural use cases, including environmental monitoring, livestock tracking, infrastructure access control, and heritage site protection. Local data processing is achieved through containerized services like Node-RED, InfluxDB, MongoDB, and Grafana, ensuring complete autonomy, without dependence on cloud services. A key contribution of the laboratory is the generation of structured datasets from real network traffic captured with Tcpdump and preprocessed using Zeek. Unlike simulated datasets, the collected data reflect communication patterns generated from real devices. Although the current dataset only includes benign traffic, the platform is prepared for future incorporation of adversarial scenarios (spoofing, DoS) to support AI-based cybersecurity research. While experiments were conducted in an indoor controlled environment, the testbed architecture is portable and suitable for future outdoor deployment. The Smart Rural IoT Lab addresses a critical gap in current research infrastructure, providing a realistic and flexible foundation for developing secure, cloud-independent IoT solutions, contributing to the digital transformation of rural regions. Full article
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47 pages, 1179 KiB  
Article
Rethinking Sustainable Operations: A Multi-Level Integration of Circularity, Localization, and Digital Resilience in Manufacturing Systems
by Antonius Setyadi, Suharno Pawirosumarto and Alana Damaris
Sustainability 2025, 17(15), 6929; https://doi.org/10.3390/su17156929 - 30 Jul 2025
Viewed by 416
Abstract
The escalating climate crisis and global disruptions have prompted a critical re-evaluation of operations management within manufacturing and supply systems. This conceptual article addresses the theoretical and strategic gap in aligning resilience and sustainability by proposing an Integrated Sustainable Operational Strategy (ISOS) framework. [...] Read more.
The escalating climate crisis and global disruptions have prompted a critical re-evaluation of operations management within manufacturing and supply systems. This conceptual article addresses the theoretical and strategic gap in aligning resilience and sustainability by proposing an Integrated Sustainable Operational Strategy (ISOS) framework. Drawing on systems theory, circular economy principles, and sustainability science, the framework synthesizes multiple operational domains—circularity, localization, digital adaptation, and workforce flexibility—across macro (policy), meso (organizational), and micro (process) levels. This study constructs a conceptual model that explains the interdependencies and trade-offs among strategic operational responses in the Anthropocene era. Supported by multi-level logic and a synthesis of domain constructs, the model provides a foundation for empirical investigation and strategic planning. Key propositions for future research are developed, focusing on causal relationships and boundary conditions. The novelty of ISOS lies in its simultaneous integration of three strategic pillars—circularity, localization, and digital resilience—within a unified, multi-scalar architecture that bridges fragmented operational theories. The article advances theory by redefining operational excellence through regenerative logic and adaptive capacity, responding directly to SDG 9 (industry innovation), SDG 12 (responsible consumption and production), and SDG 13 (climate action). This integrative framework offers both theoretical insight and practical guidance for transforming operations into catalysts of sustainable transition. Full article
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18 pages, 1287 KiB  
Article
A Multidimensional and Integrated Rehabilitation Approach (A.M.I.R.A.) for Infants at Risk of Cerebral Palsy and Other Neurodevelopmental Disabilities
by Angela Maria Setaro, Erika Loi, Serena Micheletti, Anna Alessandrini, Nicole D’Adda, Andrea Rossi, Jessica Galli, AMIRA Group and Elisa Fazzi
Children 2025, 12(8), 1003; https://doi.org/10.3390/children12081003 - 30 Jul 2025
Viewed by 406
Abstract
Background/Objectives: Early experiences can significantly influence brain development, particularly when they occur during specific time windows known as sensitive or critical periods. Therefore, the early promotion of neurodevelopmental functions is crucial in children at risk for neurodevelopmental disabilities, such as those with cerebral [...] Read more.
Background/Objectives: Early experiences can significantly influence brain development, particularly when they occur during specific time windows known as sensitive or critical periods. Therefore, the early promotion of neurodevelopmental functions is crucial in children at risk for neurodevelopmental disabilities, such as those with cerebral palsy. This article introduces AMIRA (A Multidimensional and Integrated Rehabilitation Approach), a rehabilitative framework designed for infants at risk of neurodevelopmental disabilities. Methods: AMIRA is intended to guide clinical–rehabilitation reasoning rather than prescribe a rigid sequence of predetermined activities for the child. The theoretical foundation and structure of AMIRA are presented by formalizing its criteria, objectives, tools, and intervention procedures. The framework comprises four distinct sections, each supported by adaptive strategies to facilitate access to materials and to promote play-based interactions among the child, their environment, and communication partners. Particular attention is given to optimizing both micro- and macro-environments for children with, or at risk of, co-occurring visual impairment. Each rehabilitative section includes three progressive phases: an initial observation phase, a facilitation phase to support the child’s engagement, and an active experimentation phase that gradually introduces more challenging tasks. Results: The intervention pathways in AMIRA are organized according to six core developmental domains: behavioral–emotional self-regulation, visual function, postural–motor skills, praxis, interaction and communication, and cognitive function. These are outlined in structured charts that serve as flexible guidelines rather than prescriptive protocols. Each chart presents activities of increasing complexity aligned with typical developmental milestones up to 24 months of age. For each specific ability, the corresponding habilitation goals, contextual recommendations (including environmental setup, objects, and tools), and suggested activities are provided. Conclusions: This study presents a detailed intervention approach, offering both a practical framework and a structured set of activities for use in rehabilitative settings. Further studies will explore the efficacy of the proposed standardized approach. Full article
(This article belongs to the Section Pediatric Neurology & Neurodevelopmental Disorders)
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18 pages, 1072 KiB  
Article
Complexity of Supply Chains Using Shannon Entropy: Strategic Relationship with Competitive Priorities
by Miguel Afonso Sellitto, Ismael Cristofer Baierle and Marta Rinaldi
Appl. Syst. Innov. 2025, 8(4), 105; https://doi.org/10.3390/asi8040105 - 29 Jul 2025
Viewed by 203
Abstract
Entropy is a foundational concept across scientific domains, playing a role in understanding disorder, randomness, and uncertainty within systems. This study applies Shannon’s entropy in information theory to evaluate and manage complexity in industrial supply chain management. The purpose of the study is [...] Read more.
Entropy is a foundational concept across scientific domains, playing a role in understanding disorder, randomness, and uncertainty within systems. This study applies Shannon’s entropy in information theory to evaluate and manage complexity in industrial supply chain management. The purpose of the study is to propose a quantitative modeling method, employing Shannon’s entropy model as a proxy to assess the complexity in SCs. The underlying assumption is that information entropy serves as a proxy for the complexity of the SC. The research method is quantitative modeling, which is applied to four focal companies from the agrifood and metalworking industries in Southern Brazil. The results showed that companies prioritizing cost and quality exhibit lower complexity compared to those emphasizing flexibility and dependability. Additionally, information flows related to specially engineered products and deliveries show significant differences in average entropies, indicating that organizational complexities vary according to competitive priorities. The implications of this suggest that a focus on cost and quality in SCM may lead to lower complexity, in opposition to a focus on flexibility and dependability, influencing strategic decision making in industrial contexts. This research introduces the novel application of information entropy to assess and control complexity within industrial SCs. Future studies can explore and validate these insights, contributing to the evolving field of supply chain management. Full article
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24 pages, 6890 KiB  
Article
Multi-Level Transcriptomic and Physiological Responses of Aconitum kusnezoffii to Different Light Intensities Reveal a Moderate-Light Adaptation Strategy
by Kefan Cao, Yingtong Mu and Xiaoming Zhang
Genes 2025, 16(8), 898; https://doi.org/10.3390/genes16080898 - 28 Jul 2025
Viewed by 270
Abstract
Objectives: Light intensity is a critical environmental factor regulating plant growth, development, and stress adaptation. However, the physiological and molecular mechanisms underlying light responses in Aconitum kusnezoffii, a valuable alpine medicinal plant, remain poorly understood. This study aimed to elucidate the adaptive [...] Read more.
Objectives: Light intensity is a critical environmental factor regulating plant growth, development, and stress adaptation. However, the physiological and molecular mechanisms underlying light responses in Aconitum kusnezoffii, a valuable alpine medicinal plant, remain poorly understood. This study aimed to elucidate the adaptive strategies of A. kusnezoffii under different light intensities through integrated physiological and transcriptomic analyses. Methods: Two-year-old A. kusnezoffii plants were exposed to three controlled light regimes (790, 620, and 450 lx). Leaf anatomical traits were assessed via histological sectioning and microscopic imaging. Antioxidant enzyme activities (CAT, POD, and SOD), membrane lipid peroxidation (MDA content), osmoregulatory substances, and carbon metabolites were quantified using standard biochemical assays. Transcriptomic profiling was conducted using Illumina RNA-seq, with differentially expressed genes (DEGs) identified through DESeq2 and functionally annotated via GO and KEGG enrichment analyses. Results: Moderate light (620 lx) promoted optimal leaf structure by enhancing palisade tissue development and epidermal thickening, while reducing membrane lipid peroxidation. Antioxidant defense capacity was elevated through higher CAT, POD, and SOD activities, alongside increased accumulation of soluble proteins, sugars, and starch. Transcriptomic analysis revealed DEGs enriched in photosynthesis, monoterpenoid biosynthesis, hormone signaling, and glutathione metabolism pathways. Key positive regulators (PHY and HY5) were upregulated, whereas negative regulators (COP1 and PIFs) were suppressed, collectively facilitating chloroplast development and photomorphogenesis. Trend analysis indicated a “down–up” gene expression pattern, with early suppression of stress-responsive genes followed by activation of photosynthetic and metabolic processes. Conclusions: A. kusnezoffii employs a coordinated, multi-level adaptation strategy under moderate light (620 lx), integrating leaf structural optimization, enhanced antioxidant defense, and dynamic transcriptomic reprogramming to maintain energy balance, redox homeostasis, and photomorphogenic flexibility. These findings provide a theoretical foundation for optimizing artificial cultivation and light management of alpine medicinal plants. Full article
(This article belongs to the Section Plant Genetics and Genomics)
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28 pages, 2918 KiB  
Article
Machine Learning-Powered KPI Framework for Real-Time, Sustainable Ship Performance Management
by Christos Spandonidis, Vasileios Iliopoulos and Iason Athanasopoulos
J. Mar. Sci. Eng. 2025, 13(8), 1440; https://doi.org/10.3390/jmse13081440 - 28 Jul 2025
Viewed by 329
Abstract
The maritime sector faces escalating demands to minimize emissions and optimize operational efficiency under tightening environmental regulations. Although technologies such as the Internet of Things (IoT), Artificial Intelligence (AI), and Digital Twins (DT) offer substantial potential, their deployment in real-time ship performance analytics [...] Read more.
The maritime sector faces escalating demands to minimize emissions and optimize operational efficiency under tightening environmental regulations. Although technologies such as the Internet of Things (IoT), Artificial Intelligence (AI), and Digital Twins (DT) offer substantial potential, their deployment in real-time ship performance analytics is at an emerging state. This paper proposes a machine learning-driven framework for real-time ship performance management. The framework starts with data collected from onboard sensors and culminates in a decision support system that is easily interpretable, even by non-experts. It also provides a method to forecast vessel performance by extrapolating Key Performance Indicator (KPI) values. Furthermore, it offers a flexible methodology for defining KPIs for every crucial component or aspect of vessel performance, illustrated through a use case focusing on fuel oil consumption. Leveraging Artificial Neural Networks (ANNs), hybrid multivariate data fusion, and high-frequency sensor streams, the system facilitates continuous diagnostics, early fault detection, and data-driven decision-making. Unlike conventional static performance models, the framework employs dynamic KPIs that evolve with the vessel’s operational state, enabling advanced trend analysis, predictive maintenance scheduling, and compliance assurance. Experimental comparison against classical KPI models highlights superior predictive fidelity, robustness, and temporal consistency. Furthermore, the paper delineates AI and ML applications across core maritime operations and introduces a scalable, modular system architecture applicable to both commercial and naval platforms. This approach bridges advanced simulation ecosystems with in situ operational data, laying a robust foundation for digital transformation and sustainability in maritime domains. Full article
(This article belongs to the Section Ocean Engineering)
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16 pages, 274 KiB  
Article
Exploring an Intervention to Enhance Positive Mental Health in People with First-Episode Psychosis: A Qualitative Study from the Perspective of Mental Health Professionals
by Júlia Rolduà-Ros, Antonio Rafael Moreno-Poyato, Joana Catarina Ferreira Coelho, Catarina Nogueira, Carlos Alberto Cruz Sequeira, Sónia Teixeira, Judith Usall and Maria Teresa Lluch-Canut
Healthcare 2025, 13(15), 1834; https://doi.org/10.3390/healthcare13151834 - 28 Jul 2025
Viewed by 244
Abstract
Background/Objectives: This study explores the perspectives of mental health professionals on tailoring the Mentis Plus intervention to enhance positive mental health (PMH) in individuals experiencing First-Episode Psychosis (FEP). Although the Mentis Plus Program has been previously implemented in other contexts, it has not [...] Read more.
Background/Objectives: This study explores the perspectives of mental health professionals on tailoring the Mentis Plus intervention to enhance positive mental health (PMH) in individuals experiencing First-Episode Psychosis (FEP). Although the Mentis Plus Program has been previously implemented in other contexts, it has not yet been applied to FEP care. Therefore, this study aimed to adapt the intervention for future implementation through expert consultation. Methods: A qualitative exploratory-descriptive design was employed. Data were collected via three focus groups comprising multidisciplinary professionals experienced in FEP care. Qualitative content analysis was used to examine the data. Results: Participants viewed the tailored Mentis Plus intervention as a valuable, recovery-oriented tool. Key recommendations included a flexible, group-based format with eight weekly sessions. Suggested intervention components encompassed gratitude journaling, emotional regulation techniques, and collaborative problem-solving exercises. Group delivery was highlighted as essential for mitigating isolation and promoting peer support. Practical implementation strategies included phased session structures and routine emotional check-ins. Identified barriers to implementation included the need for specialized training, limited therapeutic spaces, and the heterogeneity of participant needs. Facilitators included a person-centered approach, institutional backing, and sufficient resources. Conclusions: The findings support the feasibility and clinical relevance of a tailored Mentis Plus FEP Program—Brief Version. Expert-informed insights provide a foundation for adapting mental health interventions to early-psychosis care and inform future research and implementation strategies. Full article
18 pages, 1519 KiB  
Article
Static and Vibration Analysis of Imperfect Thermoelastic Laminated Plates on a Winkler Foundation
by Jiahuan Liu, Yunying Zhou, Yipei Meng, Hong Mei, Zhijie Yue and Yan Liu
Materials 2025, 18(15), 3514; https://doi.org/10.3390/ma18153514 - 26 Jul 2025
Viewed by 246
Abstract
This study introduces an analytical framework that integrates the state-space method with generalized thermoelasticity theory to obtain exact solutions for the static and dynamic behaviors of laminated plates featuring imperfect interfaces and resting on a Winkler foundation. The model comprehensively accounts for the [...] Read more.
This study introduces an analytical framework that integrates the state-space method with generalized thermoelasticity theory to obtain exact solutions for the static and dynamic behaviors of laminated plates featuring imperfect interfaces and resting on a Winkler foundation. The model comprehensively accounts for the foundation-structure interaction, interfacial imperfection, and the coupling between the thermal and mechanical fields. A parametric analysis explores the impact of the dimensionless foundation coefficient, interface flexibility coefficient, and thermal conductivity on the static and dynamic behaviors of the laminated plates. The results indicate that a lower foundation stiffness results in higher sensitivity of structural deformation with respect to the foundation parameter. Furthermore, an increase in interfacial flexibility significantly reduces the global stiffness and induces discontinuities in the distribution of stress and temperature. Additionally, thermal conductivity governs the continuity of interfacial heat flux, while thermo-mechanical coupling amplifies the variations in specific field variables. The findings offer valuable insights into the design and reliability evaluation of composite structures operating in thermally coupled environments. Full article
(This article belongs to the Section Materials Simulation and Design)
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19 pages, 5166 KiB  
Article
Estimating Wheat Chlorophyll Content Using a Multi-Source Deep Feature Neural Network
by Jun Li, Yali Sheng, Weiqiang Wang, Jikai Liu and Xinwei Li
Agriculture 2025, 15(15), 1624; https://doi.org/10.3390/agriculture15151624 - 26 Jul 2025
Viewed by 206
Abstract
Chlorophyll plays a vital role in wheat growth and fertilization management. Accurate and efficient estimation of chlorophyll content is crucial for providing a scientific foundation for precision agricultural management. Unmanned aerial vehicles (UAVs), characterized by high flexibility, spatial resolution, and operational efficiency, have [...] Read more.
Chlorophyll plays a vital role in wheat growth and fertilization management. Accurate and efficient estimation of chlorophyll content is crucial for providing a scientific foundation for precision agricultural management. Unmanned aerial vehicles (UAVs), characterized by high flexibility, spatial resolution, and operational efficiency, have emerged as effective tools for estimating chlorophyll content in wheat. Although multi-source data derived from UAV-based multispectral imagery have shown potential for wheat chlorophyll estimation, the importance of multi-source deep feature fusion has not been adequately addressed. Therefore, this study aims to estimate wheat chlorophyll content by integrating spectral and textural features extracted from UAV multispectral imagery, in conjunction with partial least squares regression (PLSR), random forest regression (RFR), deep neural network (DNN), and a novel multi-source deep feature neural network (MDFNN) proposed in this research. The results demonstrate the following: (1) Except for the RFR model, models based on texture features exhibit superior accuracy compared to those based on spectral features. Furthermore, the estimation accuracy achieved by fusing spectral and texture features is significantly greater than that obtained using a single type of data. (2) The MDFNN proposed in this study outperformed other models in chlorophyll content estimation, with an R2 of 0.850, an RMSE of 5.602, and an RRMSE of 15.76%. Compared to the second-best model, the DNN (R2 = 0.799, RMSE = 6.479, RRMSE = 18.23%), the MDFNN achieved a 6.4% increase in R2, and 13.5% reductions in both RMSE and RRMSE. (3) The MDFNN exhibited strong robustness and adaptability across varying years, wheat varieties, and nitrogen application levels. The findings of this study offer important insights into UAV-based remote sensing applications for estimating wheat chlorophyll under field conditions. Full article
(This article belongs to the Section Artificial Intelligence and Digital Agriculture)
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31 pages, 3024 KiB  
Review
Synthetic and Functional Engineering of Bacteriophages: Approaches for Tailored Bactericidal, Diagnostic, and Delivery Platforms
by Ola Alessa, Yoshifumi Aiba, Mahmoud Arbaah, Yuya Hidaka, Shinya Watanabe, Kazuhiko Miyanaga, Dhammika Leshan Wannigama and Longzhu Cui
Molecules 2025, 30(15), 3132; https://doi.org/10.3390/molecules30153132 - 25 Jul 2025
Viewed by 375
Abstract
Bacteriophages (phages), the most abundant biological entities on Earth, have long served as both model systems and therapeutic tools. Recent advances in synthetic biology and genetic engineering have revolutionized the capacity to tailor phages with enhanced functionality beyond their natural capabilities. This review [...] Read more.
Bacteriophages (phages), the most abundant biological entities on Earth, have long served as both model systems and therapeutic tools. Recent advances in synthetic biology and genetic engineering have revolutionized the capacity to tailor phages with enhanced functionality beyond their natural capabilities. This review outlines the current landscape of synthetic and functional engineering of phages, encompassing both in-vivo and in-vitro strategies. We describe in-vivo approaches such as phage recombineering systems, CRISPR-Cas-assisted editing, and bacterial retron-based methods, as well as synthetic assembly platforms including yeast-based artificial chromosomes, Gibson, Golden Gate, and iPac assemblies. In addition, we explore in-vitro rebooting using TXTL (transcription–translation) systems, which offer a flexible alternative to cell-based rebooting but are less effective for large genomes or structurally complex phages. Special focus is given to the design of customized phages for targeted applications, including host range expansion via receptor-binding protein modifications, delivery of antimicrobial proteins or CRISPR payloads, and the construction of biocontained, non-replicative capsid systems for safe clinical use. Through illustrative examples, we highlight how these technologies enable the transformation of phages into programmable bactericidal agents, precision diagnostic tools, and drug delivery vehicles. Together, these advances establish a powerful foundation for next-generation antimicrobial platforms and synthetic microbiology. Full article
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16 pages, 1913 KiB  
Article
Stem Volume Prediction of Chamaecyparis obtusa in South Korea Using Machine Learning and Field-Measured Tree Variables
by Chiung Ko, Jintaek Kang and Donggeun Kim
Forests 2025, 16(8), 1228; https://doi.org/10.3390/f16081228 - 25 Jul 2025
Viewed by 241
Abstract
Accurate estimation of individual tree stem volume is essential for forest resource assessment and the implementation of sustainable forest management. In South Korea, traditional regression models based on non-destructive and easily measurable field variables such as diameter at breast height (DBH) and total [...] Read more.
Accurate estimation of individual tree stem volume is essential for forest resource assessment and the implementation of sustainable forest management. In South Korea, traditional regression models based on non-destructive and easily measurable field variables such as diameter at breast height (DBH) and total height (TH) have been widely used to construct stem volume tables. However, these models often fail to adequately capture the nonlinear taper of tree stems. In this study, we evaluated and compared the predictive performance of traditional regression models and two machine learning algorithms—Random Forest (RF) and Extreme Gradient Boosting (XGBoost)—using stem profile data from 1000 destructively sampled Chamaecyparis obtusa trees collected across 318 sites nationwide. To ensure compatibility with existing national stem volume tables, all models used only DBH and TH as input variables. The results showed that all three models achieved high predictive accuracy (R2 > 0.997), with XGBoost yielding the lowest RMSE (0.0164 m3) and MAE (0.0126 m3). Although differences in performance among the models were marginal, the machine learning approaches demonstrated flexible and generalizable alternatives to conventional models, providing a practical foundation for large-scale forest inventory and the advancement of digital forest management systems. Full article
(This article belongs to the Section Forest Inventory, Modeling and Remote Sensing)
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23 pages, 1667 KiB  
Review
Review of Advances in Multiple-Resolution Modeling for Distributed Simulation
by Luis Rabelo, Mario Marin, Jaeho Kim and Gene Lee
Information 2025, 16(8), 635; https://doi.org/10.3390/info16080635 - 25 Jul 2025
Viewed by 206
Abstract
Multiple-resolution modeling (MRM) has emerged as a foundational paradigm in modern simulation, enabling the integration of models with varying levels of granularity to address complex and evolving operational demands. By supporting seamless transitions between high-resolution and low-resolution representations, MRM facilitates scalability and interoperability, [...] Read more.
Multiple-resolution modeling (MRM) has emerged as a foundational paradigm in modern simulation, enabling the integration of models with varying levels of granularity to address complex and evolving operational demands. By supporting seamless transitions between high-resolution and low-resolution representations, MRM facilitates scalability and interoperability, particularly within distributed simulation environments such as military command and control systems. This paper provides a structured review and comparative analysis of prominent MRM methodologies, including multi-resolution entities (MRE), agent-based modeling (from a federation viewpoint), hybrid frameworks, and the novel MR mode, synchronizing resolution transitions with time advancement and interaction management. Each approach is evaluated across critical dimensions such as consistency, computational efficiency, flexibility, and integration with legacy systems. Emphasis is placed on the applicability of MRM in distributed military simulations, where it enables dynamic interplay between strategic-level planning and tactical-level execution, supporting real-time decision-making, mission rehearsal, and scenario-based training. The paper also explores emerging trends involving artificial intelligence (AI) and large language models (LLMs) as enablers for adaptive resolution management and automated model interoperability. Full article
(This article belongs to the Special Issue Editorial Board Members’ Collection Series: "Information Systems")
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14 pages, 1765 KiB  
Article
Microfluidic System Based on Flexible Structures for Point-of-Care Device Diagnostics with Electrochemical Detection
by Kasper Marchlewicz, Robert Ziółkowski, Kamil Żukowski, Jakub Krzemiński and Elżbieta Malinowska
Biosensors 2025, 15(8), 483; https://doi.org/10.3390/bios15080483 - 24 Jul 2025
Viewed by 383
Abstract
Infectious diseases poses a growing public health challenge. The COVID-19 pandemic has further emphasized the urgent need for rapid, accessible diagnostics. This study presents the development of an integrated, flexible point-of-care (POC) diagnostic system for the rapid detection of Corynebacterium diphtheriae, the [...] Read more.
Infectious diseases poses a growing public health challenge. The COVID-19 pandemic has further emphasized the urgent need for rapid, accessible diagnostics. This study presents the development of an integrated, flexible point-of-care (POC) diagnostic system for the rapid detection of Corynebacterium diphtheriae, the pathogen responsible for diphtheria. The system comprises a microfluidic polymerase chain reaction (micro-PCR) device and an electrochemical DNA biosensor, both fabricated on flexible substrates. The micro-PCR platform offers rapid DNA amplification overcoming the time limitations of conventional thermocyclers. The biosensor utilizes specific molecular recognition and an electrochemical transducer to detect the amplified DNA fragment, providing a clear and direct indication of the pathogen’s presence. The combined system demonstrates the effective amplification and detection of a gene fragment from a toxic strain of C. diphtheriae, chosen due to its increasing incidence. The design leverages lab-on-a-chip (LOC) and microfluidic technologies to minimize reagent use, reduce cost, and support portability. Key challenges in microsystem design—such as flow control, material selection, and reagent compatibility—were addressed through optimized fabrication techniques and system integration. This work highlights the feasibility of using flexible, integrated microfluidic and biosensor platforms for the rapid, on-site detection of infectious agents. The modular and scalable nature of the system suggests potential for adaptation to a wide range of pathogens, supporting broader applications in global health diagnostics. The approach provides a promising foundation for next-generation POC diagnostic tools. Full article
(This article belongs to the Special Issue Microfluidics for Sample Pretreatment)
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