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19 pages, 6085 KiB  
Article
Earthquake Precursors Based on Rock Acoustic Emission and Deep Learning
by Zihan Jiang, Zhiwen Zhu, Giuseppe Lacidogna, Leandro F. Friedrich and Ignacio Iturrioz
Sci 2025, 7(3), 103; https://doi.org/10.3390/sci7030103 - 1 Aug 2025
Viewed by 141
Abstract
China is one of the countries severely affected by earthquakes, making precise and timely identification of earthquake precursors essential for reducing casualties and property damage. A novel method is proposed that combines a rock acoustic emission (AE) detection technique with deep learning methods [...] Read more.
China is one of the countries severely affected by earthquakes, making precise and timely identification of earthquake precursors essential for reducing casualties and property damage. A novel method is proposed that combines a rock acoustic emission (AE) detection technique with deep learning methods to facilitate real-time monitoring and advance earthquake precursor detection. The AE equipment and seismometers were installed in a granite tunnel 150 m deep in the mountains of eastern Guangdong, China, allowing for the collection of experimental data on the correlation between rock AE and seismic activity. The deep learning model uses features from rock AE time series, including AE events, rate, frequency, and amplitude, as inputs, and estimates the likelihood of seismic events as the output. Precursor features are extracted to create the AE and seismic dataset, and three deep learning models are trained using neural networks, with validation and testing. The results show that after 1000 training cycles, the deep learning model achieves an accuracy of 98.7% on the validation set. On the test set, it reaches a recognition accuracy of 97.6%, with a recall rate of 99.6% and an F1 score of 0.975. Additionally, it successfully identified the two biggest seismic events during the monitoring period, confirming its effectiveness in practical applications. Compared to traditional analysis methods, the deep learning model can automatically process and analyse recorded massive AE data, enabling real-time monitoring of seismic events and timely earthquake warning in the future. This study serves as a valuable reference for earthquake disaster prevention and intelligent early warning. Full article
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17 pages, 3595 KiB  
Article
Sensor-Based Monitoring of Fire Precursors in Timber Wall and Ceiling Assemblies: Research Towards Smarter Embedded Detection Systems
by Kristian Prokupek, Chandana Ravikumar and Jan Vcelak
Sensors 2025, 25(15), 4730; https://doi.org/10.3390/s25154730 - 31 Jul 2025
Viewed by 216
Abstract
The movement towards low-emission and sustainable building practices has driven increased use of natural, carbon-based materials such as wood. While these materials offer significant environmental advantages, their inherent flammability introduces new challenges for timber building safety. Despite advancements in fire protection standards and [...] Read more.
The movement towards low-emission and sustainable building practices has driven increased use of natural, carbon-based materials such as wood. While these materials offer significant environmental advantages, their inherent flammability introduces new challenges for timber building safety. Despite advancements in fire protection standards and building regulations, the risk of fire incidents—whether from technical failure, human error, or intentional acts—remains. The rapid detection of fire onset is crucial for safeguarding human life, animal welfare, and valuable assets. This study investigates the potential of monitoring fire precursor gases emitted inside building structures during pre-ignition and early combustion stages. The research also examines the sensitivity and effectiveness of commercial smoke detectors compared with custom sensor arrays in detecting these emissions. A representative structural sample was constructed and subjected to a controlled fire scenario in a laboratory setting, providing insights into the integration of gas sensing technologies for enhanced fire resilience in sustainable building systems. Full article
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18 pages, 1132 KiB  
Article
A Longitudinal Study of Premalignant Gastric Lesions and Early Onset Gastric Cancer Among Young Adults in Central Saudi Arabia
by Ahmed Albadrani, Georgios Zacharakis, Mohammed Saad Alqahtani, Abdulrahman AlHarbi, Abdulaziz Alkudam, Abdullah Bawazir, Naif Albulayhid, Majed Zaki Bahader, Ahmed Mohammed Alghayyamah and Zahraa Saeed Alzaher
Curr. Oncol. 2025, 32(8), 428; https://doi.org/10.3390/curroncol32080428 - 30 Jul 2025
Viewed by 240
Abstract
Gastric cancer traditionally affects older adults, and its precursor lesions and risk factors are well-documented in this population. Helicobacter pylori (H. pylori) infection remains highly prevalent in Saudi Arabia and contributes to gastric pathology. However, early-onset gastric cancer (EOGC), diagnosed in [...] Read more.
Gastric cancer traditionally affects older adults, and its precursor lesions and risk factors are well-documented in this population. Helicobacter pylori (H. pylori) infection remains highly prevalent in Saudi Arabia and contributes to gastric pathology. However, early-onset gastric cancer (EOGC), diagnosed in individuals aged ≤ 45 years, presents unique challenges and remains poorly understood in young populations. Therefore, we conducted an observational cohort study using a prospective longitudinal design (2021–2024) involving 1823 Saudi nationals aged 18–45 years who underwent zoom high-definition chromoendoscopy to evaluate the prevalence of premalignant gastric lesions (PGLs) and EOGC. We found a high H. pylori prevalence (78.0%) with PGLs in 1.9% of participants and EOGC-adenocarcinoma in 0.7% of patients. All EOGC cases arose from dysplasia, with most PGLs being classified as OLGA/OLGIM stage II/III. Multiple risk factorswere significantly associated with PGLs and EOGC, including H. pylori infection (p = 0.022), increasing age (p < 0.001), a family history of gastric cancer (p < 0.001), poor dietary habits (p < 0.001), obesity (p < 0.001), and smoking (p < 0.001). Additional EOGC risk factors include dage of 36–45 years (p = 0.018), EBV infection (p = 0.016), and diabetes mellitus (p = 0.001). These findings demonstrate the notable presence of PGLs and EOGC in young Saudi adults and emphasize the importance of early detection and risk factor management in this vulnerable population. Full article
(This article belongs to the Section Gastrointestinal Oncology)
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14 pages, 1712 KiB  
Article
Machine Learning-Based Predictive Model for Risk Stratification of Multiple Myeloma from Monoclonal Gammopathy of Undetermined Significance
by Amparo Santamaría, Marcos Alfaro, Cristina Antón, Beatriz Sánchez-Quiñones, Nataly Ibarra, Arturo Gil, Oscar Reinoso and Luis Payá
Electronics 2025, 14(15), 3014; https://doi.org/10.3390/electronics14153014 - 29 Jul 2025
Viewed by 258
Abstract
Monoclonal Gammopathy of Undetermined Significance (MGUS) is a precursor to hematologic malignancies such as Multiple Myeloma (MM) and Waldenström Macroglobulinemia (WM). Accurate risk stratification of MGUS patients remains a clinical and computational challenge, with existing models often misclassifying both high-risk and low-risk individuals, [...] Read more.
Monoclonal Gammopathy of Undetermined Significance (MGUS) is a precursor to hematologic malignancies such as Multiple Myeloma (MM) and Waldenström Macroglobulinemia (WM). Accurate risk stratification of MGUS patients remains a clinical and computational challenge, with existing models often misclassifying both high-risk and low-risk individuals, leading to inefficient healthcare resource allocation. This study presents a machine learning (ML)-based approach for early prediction of MM/WM progression, using routinely collected hematological data, which are selected based on clinical relevance. A retrospective cohort of 292 MGUS patients, including 7 who progressed to malignancy, was analyzed. For each patient, a feature descriptor was constructed incorporating the latest biomarker values, their temporal trends over the previous year, age, and immunoglobulin subtype. To address the inherent class imbalance, data augmentation techniques were applied. Multiple ML classifiers were evaluated, with the Support Vector Machine (SVM) achieving the highest performance (94.3% accuracy and F1-score). The model demonstrates that a compact set of clinically relevant features can yield robust predictive performance. These findings highlight the potential of ML-driven decision-support systems in electronic health applications, offering a scalable solution for improving MGUS risk stratification, optimizing clinical workflows, and enabling earlier interventions. Full article
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12 pages, 2097 KiB  
Case Report
The Clinical Management and Outcomes of Two Cases of Vulvar Neoplasms: A Two-Case Study of VIN 3 and Stage IA Vulvar Keratinizing Squamous Cell Carcinoma
by Oana Denisa Balalau, Fernanda Ecaterina Augustin, Cristian Balalau, Romina Marina Sima and Liana Ples
J. Mind Med. Sci. 2025, 12(2), 40; https://doi.org/10.3390/jmms12020040 - 29 Jul 2025
Viewed by 252
Abstract
Vulvar carcinoma is the fourth most common gynecological cancer, with squamous cell carcinoma being the most frequent type. Vulvar intraepithelial neoplasia (VIN) is a precursor lesion and is strongly associated with human papillomavirus (HPV) infection. This paper presents two patients in their sixth [...] Read more.
Vulvar carcinoma is the fourth most common gynecological cancer, with squamous cell carcinoma being the most frequent type. Vulvar intraepithelial neoplasia (VIN) is a precursor lesion and is strongly associated with human papillomavirus (HPV) infection. This paper presents two patients in their sixth decade of life, the first diagnosed with VIN 3 (carcinoma in situ) and the second with stage IA keratinizing squamous cell carcinoma. Both patients had HPV infection; immunohistochemistry confirmed HPV-dependent VIN3 in the first case, while the second patient had a pre-existing HPV high-risk 53 infection. Both patients underwent partial vulvectomy, with the second also having bilateral inguinal–femoral lymph node dissection, which showed no lymph node invasion. The first patient had a histopathological result of VIN 3 with clear margins. The second patient underwent adjuvant radiotherapy following restaging pathology. Both are showing favorable postoperative progress. Conclusions. The early diagnosis of vulvar neoplasms enables less radical but effective surgeries, balancing oncologic control with quality of life. A multidisciplinary approach is essential for adjusting treatments, improving both clinical outcomes and patient well-being. Full article
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26 pages, 2576 KiB  
Review
Exploring Cirrhosis: Insights into Advances in Therapeutic Strategies
by Magdalena Wiacek, Anna Adam, Rafał Studnicki and Igor Z. Zubrzycki
Int. J. Mol. Sci. 2025, 26(15), 7226; https://doi.org/10.3390/ijms26157226 - 25 Jul 2025
Viewed by 204
Abstract
Cirrhosis remains a significant global health burden, responsible for nearly 4% of annual deaths worldwide. Despite progress in antiviral therapies and public health measures, its prevalence has plateaued, particularly in regions affected by viral hepatitis, alcohol misuse, and metabolic syndrome. This review presents [...] Read more.
Cirrhosis remains a significant global health burden, responsible for nearly 4% of annual deaths worldwide. Despite progress in antiviral therapies and public health measures, its prevalence has plateaued, particularly in regions affected by viral hepatitis, alcohol misuse, and metabolic syndrome. This review presents a comprehensive synthesis of the multifactorial drivers of cirrhosis, including hepatocyte injury, liver stellate cell activation, and immune-mediated inflammation. The emphasis is on the central role of metabolic dysfunction, characterized by mitochondrial impairment, altered lipid and glucose metabolism, hormonal imbalance, and systemic inflammation, in exacerbating disease progression. While current therapies may slow the progression of early-stage disease, they are very often ineffective in reversing established fibrosis. Emerging molecular strategies offer promising alternatives by targeting key pathogenic pathways. These include AMPK activators (e.g., metformin, AICAR), FGF21 analogs, and mitochondria-targeted agents (e.g., MitoQ, urolithin A, NAD+ precursors) to restore bioenergetic balance and reduce oxidative stress. Other approaches, such as mesenchymal stem cell therapy, inflammasome inhibition, and hormonal modulation, aim to suppress fibrogenesis and restore liver homeostasis. The integration of systems biology and multi-omics profiling supports patient stratification and precision medicine. This review highlights a shift toward mechanism-based interventions that have the potential to alter cirrhosis outcomes and improve patient survival. Full article
(This article belongs to the Special Issue Cirrhosis: From Molecular Mechanisms to Therapeutic Strategies)
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28 pages, 1971 KiB  
Review
Radon Anomalies and Earthquake Prediction: Trends and Research Hotspots in the Scientific Literature
by Félix Díaz and Rafael Liza
Geosciences 2025, 15(8), 283; https://doi.org/10.3390/geosciences15080283 - 25 Jul 2025
Viewed by 227
Abstract
Radon anomalies have long been explored as potential geochemical precursors to seismic activity due to their responsiveness to subsurface stress variations. However, before this study, the scientific progression of this research domain had not been systematically examined through a quantitative lens. This study [...] Read more.
Radon anomalies have long been explored as potential geochemical precursors to seismic activity due to their responsiveness to subsurface stress variations. However, before this study, the scientific progression of this research domain had not been systematically examined through a quantitative lens. This study presents a comprehensive bibliometric analysis of 379 articles published between 1977 and 2025 and indexed in Scopus and Web of Science. Utilizing the Bibliometrix R-package and its Biblioshiny interface, the analysis investigates temporal publication trends, leading countries, institutions, international collaboration networks, and thematic evolution. The results reveal a marked increase in research output since 2010, with China, India, and Italy emerging as the most prolific contributors. Thematic mapping indicates a shift from conventional geochemical monitoring toward the integration of artificial intelligence techniques, such as decision trees and neural networks, for anomaly detection and predictive modeling. Notwithstanding this methodological evolution, core research themes remain centered on radon concentration monitoring and the analysis of environmental parameters. Overall, the findings highlight the coexistence of traditional and emerging approaches, emphasizing the importance of standardized methodologies and interdisciplinary collaboration. This bibliometric synthesis provides strategic insights to inform future research and strengthen the role of radon monitoring in seismic early warning systems. Full article
(This article belongs to the Section Natural Hazards)
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26 pages, 4820 KiB  
Article
Olive Oil Wastewater Revalorization into a High-Added Value Product: A Biofertilizer Assessment Combining LCA and MCI
by Roberto Petrucci, Gabriele Menegaldo, Lucia Rocchi, Luisa Paolotti, Antonio Boggia and Debora Puglia
Sustainability 2025, 17(15), 6779; https://doi.org/10.3390/su17156779 - 25 Jul 2025
Viewed by 305
Abstract
The olive oil sector constitutes a fundamental pillar in the Mediterranean region from socio-economic and cultural perspectives. Nonetheless, it produces significant amounts of waste, leading to numerous environmental issues. These waste streams contain valuable compounds that can be recovered and utilized as inputs [...] Read more.
The olive oil sector constitutes a fundamental pillar in the Mediterranean region from socio-economic and cultural perspectives. Nonetheless, it produces significant amounts of waste, leading to numerous environmental issues. These waste streams contain valuable compounds that can be recovered and utilized as inputs for various applications. This study introduces a novel value chain for olive wastes, focused on extracting lignin from olive pomace by ionic liquids and polyphenols from olive mill wastewater, which are then incorporated as hybrid nanoparticles in the formulation of an innovative starch-based biofertilizer. This biofertilizer, obtained by using residual wastewater as a source of soluble nitrogen, acting at the same time as a plasticizer for the biopolymer, was demonstrated to surpass traditional NPK biofertilizers’ efficiency, allowing for root growth and foliage in drought conditions. In order to recognize the environmental impact due to its production and align it with the technical output, the circularity and environmental performance of the proposed system were innovatively evaluated through a combination of Life Cycle Assessment (LCA) and the Material Circularity Indicator (MCI). LCA results indicated that the initial upcycling process was potentially characterized by significant hot spots, primarily related to energy consumption (>0.70 kWh/kg of water) during the early processing stages. As a result, the LCA score of this preliminary version of the biofertilizer may be higher than that of conventional commercial products, due to reliance on thermal processes for water removal and the substantial contribution (56%) of lignin/polyphenol precursors to the total LCA score. Replacing energy-intensive thermal treatments with more efficient alternatives represents a critical area for improvement. The MCI value of 0.84 indicates limited potential for further enhancement. Full article
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19 pages, 5269 KiB  
Article
Three-Dimensional Ordered Porous SnO2 Nanostructures Derived from Polystyrene Sphere Templates for Ethyl Methyl Carbonate Detection in Battery Safety Applications
by Peijiang Cao, Linlong Qu, Fang Jia, Yuxiang Zeng, Deliang Zhu, Chunfeng Wang, Shun Han, Ming Fang, Xinke Liu, Wenjun Liu and Sachin T. Navale
Nanomaterials 2025, 15(15), 1150; https://doi.org/10.3390/nano15151150 - 25 Jul 2025
Viewed by 307
Abstract
As lithium-ion batteries (LIBs) gain widespread use, detecting electrolyte–vapor emissions during early thermal runaway (TR) remains critical to ensuring battery safety; yet, it remains understudied. Gas sensors integrating oxide nanostructures offer a promising solution as they possess high sensitivity and fast response, enabling [...] Read more.
As lithium-ion batteries (LIBs) gain widespread use, detecting electrolyte–vapor emissions during early thermal runaway (TR) remains critical to ensuring battery safety; yet, it remains understudied. Gas sensors integrating oxide nanostructures offer a promising solution as they possess high sensitivity and fast response, enabling rapid detection of various gas-phase indicators of battery failure. Utilizing this approach, 3D ordered tin oxide (SnO2) nanostructures were synthesized using polystyrene sphere (PS) templates of varied diameters (200–1500 nm) and precursor concentrations (0.2–0.6 mol/L) to detect key electrolyte–vapors, especially ethyl methyl carbonate (EMC), released in the early stages of TR. The 3D ordered SnO2 nanostructures with ring- and nanonet-like morphologies, formed after PS template removal, were characterized, and the effects of template size and precursor concentration on their structure and sensing performance were investigated. Among various nanostructures of SnO2, nanonets achieved by a 1000 nm PS template and 0.4 mol/L precursor showed higher mesoporosity (~28 nm) and optimal EMC detection. At 210 °C, it detected 10 ppm EMC with a response of ~7.95 and response/recovery times of 14/17 s, achieving a 500 ppb detection limit alongside excellent reproducibility/stability. This study demonstrates that precise structural control of SnO2 nanostructures using templates enables sensitive EMC detection, providing an effective sensor-based strategy to enhance LIB safety. Full article
(This article belongs to the Special Issue Trends and Prospects in Gas-Sensitive Nanomaterials)
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23 pages, 8003 KiB  
Article
Study on Meso-Mechanical Evolution Characteristics and Numerical Simulation of Deep Soft Rock
by Anying Yuan, Hao Huang and Tang Li
Processes 2025, 13(8), 2358; https://doi.org/10.3390/pr13082358 - 24 Jul 2025
Viewed by 285
Abstract
To reveal the meso-mechanical essence of deep rock mass failure and capture precursor information, this study focuses on soft rock failure mechanisms. Based on the discontinuous medium discrete element method (DEM), we employed digital image correlation (DIC) technology, acoustic emission (AE) monitoring, and [...] Read more.
To reveal the meso-mechanical essence of deep rock mass failure and capture precursor information, this study focuses on soft rock failure mechanisms. Based on the discontinuous medium discrete element method (DEM), we employed digital image correlation (DIC) technology, acoustic emission (AE) monitoring, and particle flow code (PFC) numerical simulation to investigate the failure evolution characteristics and AE quantitative representation of soft rocks. Key findings include the following: Localized high-strain zones emerge on specimen surfaces before macroscopic crack visualization, with crack tip positions guiding both high-strain zones and crack propagation directions. Strong force chain evolution exhibits high consistency with the macroscopic stress response—as stress increases and damage progresses, force chains concentrate near macroscopic fracture surfaces, aligning with crack propagation directions, while numerous short force chains coalesce into longer chains. The spatial and temporal distribution characteristics of acoustic emissions were explored, and the damage types were quantitatively characterized, with ring-down counts demonstrating four distinct stages: sporadic, gradual increase, stepwise growth, and surge. Shear failures predominantly occurred along macroscopic fracture surfaces. At the same time, there is a phenomenon of acoustic emission silence in front of the stress peak in the surrounding rock of deep soft rock roadway, as a potential precursor indicator for engineering disaster early warning. These findings provide critical theoretical support for deep engineering disaster prediction. Full article
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8 pages, 1550 KiB  
Case Report
Diagnostic Challenges in Acute Leukemia: From Dental Pain to Catastrophic Intracerebral Hemorrhage
by Anatoli Pinchuk, Stefan P. Roch, Christian Mawrin, Daniel Behme, Klaus-Peter Stein, Belal Neyazi, Martin Mikusko, Ibrahim Erol Sandalcioglu and Ali Rashidi
Hematol. Rep. 2025, 17(4), 36; https://doi.org/10.3390/hematolrep17040036 - 23 Jul 2025
Viewed by 175
Abstract
Background and Clinical significance: Acute leukemias are neoplasms of the hematopoietic system that are caused by the extensive proliferation of immature precursor cells (‘blasts’), mainly in the bone marrow. They frequently manifest with vague and non-specific clinical symptoms, making early diagnosis particularly [...] Read more.
Background and Clinical significance: Acute leukemias are neoplasms of the hematopoietic system that are caused by the extensive proliferation of immature precursor cells (‘blasts’), mainly in the bone marrow. They frequently manifest with vague and non-specific clinical symptoms, making early diagnosis particularly challenging. Case Presentation: This case report describes the clinical course of a female patient who initially sought dental care due to a persistent toothache—an atypical and misleading symptom. Subsequent investigations revealed a diagnosis of acute leukemia. Although the malignancy was identified promptly and the appropriate therapeutic measures were initiated, the disease progressed with alarming rapidity. The patient ultimately developed a massive intracerebral hemorrhage—a devastating complication likely related to leukemia-associated coagulopathy. Despite emergent neurosurgical intervention, the hemorrhage proved fatal. Conclusions: This case highlights the critical need for heightened clinical suspicion in the presence of unusual symptoms and illustrates the complex interplay between hematologic malignancies and coagulopathic complications. Full article
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13 pages, 1157 KiB  
Review
Precision Care in Screening, Surveillance, and Overall Management of Barrett’s Esophagus
by Yeshaswini Reddy, Madhav Desai, Bernadette Tumaliuan and Nirav Thosani
J. Pers. Med. 2025, 15(8), 327; https://doi.org/10.3390/jpm15080327 - 22 Jul 2025
Viewed by 326
Abstract
Barrett’s esophagus (BE), a metaplastic transformation of an esophageal squamous epithelium into an intestinal-type columnar epithelium, is the primary precursor to esophageal adenocarcinoma (EAC). Traditional management strategies have relied heavily on selective screening, tailored surveillance intervals, and early dysplasia detection and treatment algorithms. [...] Read more.
Barrett’s esophagus (BE), a metaplastic transformation of an esophageal squamous epithelium into an intestinal-type columnar epithelium, is the primary precursor to esophageal adenocarcinoma (EAC). Traditional management strategies have relied heavily on selective screening, tailored surveillance intervals, and early dysplasia detection and treatment algorithms. However, the heterogeneity in progression risk among BE patients necessitates a more nuanced, personalized approach involving precision care, tailoring decisions to individual patient characteristics, promises to enhance outcomes in BE through more targeted screening, personalized surveillance intervals, and risk-based therapeutic strategies. This review explores the current landscape and emerging trends in precision medicine for Barrett’s esophagus, highlighting genomic markers, digital pathology, and AI-driven models as tools to transform how we approach this complex disease and prevent progression to EAC. Full article
(This article belongs to the Special Issue Clinical Updates on Personalized Upper Gastrointestinal Endoscopy)
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22 pages, 5026 KiB  
Article
The “Bagno dell’Acqua” Lake as a Novel Mars-like Analogue: Prebiotic Syntheses of PNA and RNA Building Blocks and Oligomers
by Valentina Ubertini, Eleonora Mancin, Enrico Bruschini, Marco Ferrari, Agnese Piacentini, Stefano Fazi, Cristina Mazzoni, Bruno Mattia Bizzarri, Raffaele Saladino and Giovanna Costanzo
Int. J. Mol. Sci. 2025, 26(14), 6952; https://doi.org/10.3390/ijms26146952 - 19 Jul 2025
Viewed by 396
Abstract
The ongoing exploration of planets such as Mars is producing a wealth of data to define habitable environments beyond the Earth. The inferred presence of neutral to alkaline aqueous fluids on Mars in its early history suggests that many potentially habitable environments existed [...] Read more.
The ongoing exploration of planets such as Mars is producing a wealth of data to define habitable environments beyond the Earth. The inferred presence of neutral to alkaline aqueous fluids on Mars in its early history suggests that many potentially habitable environments existed on the planet. Terrestrial analogues with similar chemical and physical properties are being explored and characterized in order to assess their suitability for triggering the Origin of Life on Mars. Recently, a novel Mars analogue site has been identified in the Bagno dell’Acqua Lake, which is located in the island of Pantelleria in Sicily (Italy). We report here that microbialite from the Bagno dell’Acqua Lake acts as an efficient catalyst for prebiotic processes, starting from a ternary mixture of well-recognized chemical precursors, including ammonium formate, diaminomalonitrile, and alpha-amino acids. Under thermal conditions, significant amounts of building blocks of both RNA and PNA were obtained. Furthermore, samples of the water from the Bagno dell’Acqua Lake have been found to promote the polymerization of the H-form of 3′,5′-cyclic GMP, resulting in the generation of RNA oligomers of up to 15 units in length. Full article
(This article belongs to the Collection Feature Papers in Molecular Genetics and Genomics)
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20 pages, 1949 KiB  
Article
Hormone Fluctuation and Gene Expression During Early Stages of the Hickory Grafting Process
by Qiaoyu Huang, Haixia Liu, Qinyuan Shen, Huwei Yuan, Fuqiang Cui, Daoliang Yan, Wona Ding, Xiaofei Wang and Bingsong Zheng
Plants 2025, 14(14), 2229; https://doi.org/10.3390/plants14142229 - 18 Jul 2025
Viewed by 361
Abstract
Grafting involves complex hormonal interactions at graft interfaces that are not yet fully understood. In this study, we analyzed hormone fluctuations and gene expression during callus proliferation and vascular tissue differentiation in hickory (Carya cathayensis Sarg.) grafts. Cytokinin and ethylene precursor ACC [...] Read more.
Grafting involves complex hormonal interactions at graft interfaces that are not yet fully understood. In this study, we analyzed hormone fluctuations and gene expression during callus proliferation and vascular tissue differentiation in hickory (Carya cathayensis Sarg.) grafts. Cytokinin and ethylene precursor ACC levels steadily increased after grafting. The biosynthetic genes for these hormones (IPT3, ACS1, ACO1, and ACO5) exhibited heightened expression. Genes related to cytokinin signaling (RR3, ARR4, and ZFP5) and ethylene signaling (MKK9, ESE1, and ESE3) were similarly upregulated. Conversely, genes associated with jasmonic acid, abscisic acid, and strigolactone pathways were downregulated, including synthesis genes (AOC4 and AOS) and those involved in signal transduction (NAC3, WRKY51, and SMAX1). Correspondingly, JA-Ile and 5-deoxystrigol levels significantly decreased. Indole-3-acetic acid (IAA) levels also dropped during the early stages of graft union formation. These results suggest that low auxin concentrations may be essential in the initial stages after grafting to encourage callus proliferation, followed by an increase at later stages to facilitate vascular bundle differentiation. These findings imply that maintaining a balance between low auxin levels and elevated cytokinin and ethylene levels may be critical to support cell division and callus formation during the initial proliferation phase. Later, during the vascular differentiation phase, a gradual rise in auxin levels, accompanied by elevated ethylene, may facilitate the differentiation of vascular bundles in hickory grafts. Full article
(This article belongs to the Section Plant Development and Morphogenesis)
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16 pages, 1927 KiB  
Article
Missense Mutations in the KAT Domain of CREBBP Gene in Patients with Follicular Lymphoma: Implications for Differential Diagnosis and Prognosis
by Anna Smolianinova, Ivan Bolshakov, Yulia Sidorova, Alla Kovrigina, Tatiana Obukhova, Nelli Gabeeva, Eduard Gemdzhian, Elena Nikulina, Bella Biderman, Nataliya Severina, Nataliya Risinskaya, Andrey Sudarikov, Eugeniy Zvonkov and Elena Parovichnikova
Int. J. Mol. Sci. 2025, 26(14), 6913; https://doi.org/10.3390/ijms26146913 - 18 Jul 2025
Viewed by 383
Abstract
Follicular lymphoma (FL) is one of the most common types of non-Hodgkin’s lymphomas. The tumor is characterized by a wide range of clinical manifestations, ranging from indolent forms to early transformation and progression with a poor prognosis. The search for clinically significant genetic [...] Read more.
Follicular lymphoma (FL) is one of the most common types of non-Hodgkin’s lymphomas. The tumor is characterized by a wide range of clinical manifestations, ranging from indolent forms to early transformation and progression with a poor prognosis. The search for clinically significant genetic changes is essential for personalized risk assessment and treatment selection. The CREBBP gene is frequently mutated in this type of lymphoma, with changes occurring at the level of the earliest tumor precursor cells. However, the prognostic and diagnostic significance of the CREBBP gene mutation status in FL has not been fully established. In this study, we analyzed sequencing data of exons 22–30 of the CREBBP gene in 86 samples from patients with different grades of FL (1–3B), including those in the 3A–3B subgroup without the t(14;18) translocation. We also investigated the prognostic significance of CREBBP gene mutations in relation to the treatment options, namely high-dose chemotherapy with autologous hematopoietic stem cell transplantation (HDCT/auto-HSCT) and conventional chemotherapy programs (CCT). It was found that FL patients with a single missense mutation in the KAT domain of the CREBBP gene experienced an extremely low number of early adverse events related to lymphoma and had better long-term survival rates, regardless of treatment option. In contrast, when comparing patients with FL without a missense mutation in the KAT domain or those with multiple mutations in the CREBBP gene, overall and progression free survival were worse, and early progression and histological transformation were more common. Compared to standard therapy, patients who underwent HDCT/auto-HSCT in the FL 1–3B (14;18)-positive group without a single missense mutation in the KAT domain had better survival rates and lower rates of transformation and early progression. In addition, among patients with FL 3A–3B (14;18)-negative, we found that there were no cases of a missense mutation in the KAT domain of the CREBBP gene. This suggests that a single missense mutation in the CREBBP gene may be a feature that discriminates 14;18-positive FL with a favorable prognosis from a high-risk disease. FL 3A–3B (14;18)-negative may represent a distinct variant with different biology and underlying mechanisms of development compared to classical FL. Full article
(This article belongs to the Special Issue Molecular Diagnostics and Genomics of Tumors)
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