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Search Results (3,979)

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28 pages, 3117 KB  
Review
Nanotechnology for Drought Mitigation and Water Conservation: Opportunities and Limitations
by Hassan El-Ramady, Daniella Sári, Tamer Elsakhawy, Neama Abdalla, Howaida I. Abd-Alla and József Prokisch
Nanomaterials 2026, 16(9), 523; https://doi.org/10.3390/nano16090523 (registering DOI) - 26 Apr 2026
Abstract
Water scarcity is becoming an increasingly critical global challenge, driven by climate change, rapid population growth, pollution, and unsustainable water use. Drought further intensifies this crisis by reducing water availability across agricultural, environmental, and socio-economic systems. In this context, nanotechnology has emerged as [...] Read more.
Water scarcity is becoming an increasingly critical global challenge, driven by climate change, rapid population growth, pollution, and unsustainable water use. Drought further intensifies this crisis by reducing water availability across agricultural, environmental, and socio-economic systems. In this context, nanotechnology has emerged as a promising tool for improving water management and enhancing drought resilience. This review examines the role of nanotechnology in drought mitigation and water conservation through multiple pathways, including the enhancement of plant drought tolerance, improvement in soil water retention, the development of smart irrigation and nano-sensing systems, and the expansion of water resources through purification, desalination, and wastewater reuse. In addition, the broader drought–water nexus is discussed to position nano-enabled approaches within existing water management strategies. While numerous studies report improvements in water-use efficiency, stress tolerance, and treatment performance under controlled conditions, significant limitations remain. These include concerns related to environmental safety, nanotoxicity, scalability, cost, and the gap between laboratory findings and field-level applications. Overall, nanotechnology should be considered a complementary approach rather than a stand-alone solution for addressing water scarcity under drought conditions. Future research should focus on long-term environmental impacts, techno-economic feasibility, and large-scale field validation to support the safe and effective integration of nanotechnology into sustainable water management systems. Full article
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27 pages, 12834 KB  
Review
Silicon at the Soil–Plant–Microbiome Interface: Rhizospheric Reconfiguration and Crop Resilience to Environmental Stresses
by Aziz Boutafda, Said Kounbach, Ali Zourif, Rachid Benhida and Mohammed Danouche
Plants 2026, 15(9), 1320; https://doi.org/10.3390/plants15091320 (registering DOI) - 25 Apr 2026
Abstract
Silicon is increasingly applied in agriculture to improve plant productivity under both abiotic and biotic stress constraints. Nevertheless, its mechanisms of action are often studied separately at the soil, plant, or microbiome levels, limiting a comprehensive understanding of its overall impact on agroecosystem [...] Read more.
Silicon is increasingly applied in agriculture to improve plant productivity under both abiotic and biotic stress constraints. Nevertheless, its mechanisms of action are often studied separately at the soil, plant, or microbiome levels, limiting a comprehensive understanding of its overall impact on agroecosystem functioning. This review proposes an integrated perspective of the soil–plant–microbiome continuum, linking silicon chemistry in soil solutions with the effects of silicon amendments on soil properties and the processes of uptake, transport, and deposition in the plants. We show that silicon bioavailability depends on maintaining a pool of dissolved silicon dominated by orthosilicic acid, regulated by mineral weathering, adsorption–desorption dynamics, polymerization, pH, iron and aluminum oxides, and organic matter. In soils, silicon inputs can improve structure, modulate acidity and cation exchange balances, influence nutrient availability, and reduce the mobility of certain metals. They may also affect enzymatic activities and microbial community composition. In plants, silicon uptake and transport, mediated by specific transporters, contribute to tissue silicification, the maintenance of leaf architecture, and the regulation of water, ionic, and redox homeostasis. These processes provide a basis for enhanced tolerance to drought, salinity, and metal toxicity, as well as biotic stress caused by pathogens and pests. Finally, we discuss key limitations to the agronomic application of silicon, including the diagnosis of the silicic status of soils, the choice of source and mode of application, and the genotypic variability of acquisition, as well as the need for multi-site tests and more robust mechanistic validations. This synthesis provides a coherent mechanistic framework to better define the conditions under which silicon can serve as a reliable tool for sustainable crop management under climate change. Full article
(This article belongs to the Section Plant–Soil Interactions)
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65 pages, 1650 KB  
Review
Decoding the Functional Proteome of Vitis: Past, Present, and Future
by Ivana Tomaz, Ana Jeromel, Darko Vončina, Ivanka Habuš Jerčić, Boris Lazarević, Iva Šikuten, Simona Hofer Geušić and Darko Preiner
Plants 2026, 15(9), 1314; https://doi.org/10.3390/plants15091314 (registering DOI) - 24 Apr 2026
Abstract
Proteomic research in the genus Vitis has progressed from early biochemical studies of soluble proteins to high-resolution, quantitative analyses encompassing all major organs and derived products. This review provides a comprehensive synthesis of advances in grapevine and wine proteomics. In leaves, studies have [...] Read more.
Proteomic research in the genus Vitis has progressed from early biochemical studies of soluble proteins to high-resolution, quantitative analyses encompassing all major organs and derived products. This review provides a comprehensive synthesis of advances in grapevine and wine proteomics. In leaves, studies have revealed extensive remodeling of photosynthetic, antioxidant, and defense pathways under biotic (e.g., Plasmopara viticola, Erysiphe necator, Xylella fastidiosa, Candidatus Phytoplasma vitis) and abiotic stresses (drought, salinity, heat, light). Bud proteomics elucidated hormonal regulation and mechanisms of dormancy release, while root studies identified nitrate-dependent metabolic shifts and adaptive protein networks. Cell culture models enabled controlled investigation of elicitor responses, stilbene biosynthesis, and temperature-induced proteome changes. In berries, proteomics clarified developmental transitions from fruit set to ripening, emphasizing proteins related to secondary metabolism, vacuolar transport, and stress tolerance. Comparative analyses across cultivars and environments identified biomarkers linked to aroma, color, and texture. The wine proteome revealed selective persistence of grape-derived proteins (e.g., thaumatin-like proteins, chitinases) and yeast peptides influencing stability and sensory properties, while Botrytis cinerea infection significantly alters this balance by degrading PR proteins and introducing fungal enzymes. Altogether, the Vitis proteome emerges as a dynamic, multifunctional system crucial for understanding plant adaptation, enological quality, and biomarker discovery. Full article
(This article belongs to the Special Issue Omics in Plant Development and Stress Responses)
18 pages, 21739 KB  
Article
Comprehensive Genomic Analysis and Expression Profiling of the C2H2-Type Zinc Finger Protein Family Under Abiotic Stresses in Watermelon
by Siyu Zhang, Yanuan Zhu, Hailiang Yu, Shihui Yao, Tao Xiao, Yongchao Yang, Chao Li, Hao Li, Jianxiang Ma, Yong Zhang, Xian Zhang, Chunhua Wei and Zhongyuan Wang
Genes 2026, 17(5), 504; https://doi.org/10.3390/genes17050504 (registering DOI) - 24 Apr 2026
Abstract
Background: C2H2 zinc finger proteins (C2H2-ZFPs) are one of the largest transcription factor families in plants and play vital roles in plant organ development and patterning, seed germination, and fruit ripening, as well as responses to biotic and abiotic stresses. Although widely studied [...] Read more.
Background: C2H2 zinc finger proteins (C2H2-ZFPs) are one of the largest transcription factor families in plants and play vital roles in plant organ development and patterning, seed germination, and fruit ripening, as well as responses to biotic and abiotic stresses. Although widely studied in many species, the genome-wide characterization of the C2H2-ZFP family in watermelon (Citrullus lanatus) remains lacking. Methods: In this study, we identified 96 ClZFP genes in the watermelon genome and analyzed their chromosomal positions, gene structures, conserved motifs, and expression profiles. A tissue-specific expression analysis of 12 representative ClZFP genes revealed diverse and organ-preferential expression profiles, indicating functional differentiation during development. Results: Under abiotic stress treatments, four genes were significantly downregulated under drought, while one gene was strongly induced; six genes were inhibited and three genes were activated under low temperature; and most tested genes were upregulated at 72 h under salt stress, with one gene continuously induced throughout the treatment period. Key ClZFP members such as ClZFP36 and ClZFP72 showed specific and strong induction under drought and salt stress, respectively. Conclusions: These results indicate that ClZFPs may be involved in the tolerance of watermelon to various abiotic stresses. This study not only clarifies the evolutionary and expression characteristics of the ClZFP family in watermelon but also provides candidate genes for the genetic improvement of stress tolerance in cucurbit crops. Full article
(This article belongs to the Section Plant Genetics and Genomics)
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17 pages, 2481 KB  
Article
Spatial Dynamics of Climate-Driven Suitability for Africa’s Rainfed Staple Crops
by Benjamin Kipkemboi Kogo and Philip Kibet Langat
Land 2026, 15(5), 725; https://doi.org/10.3390/land15050725 - 24 Apr 2026
Abstract
Africa’s rainfed agricultural systems are highly exposed to climate change, making shifts in temperature and rainfall a major concern for staple-food crop production. Using a MaxENT ecological niche modelling approach with crop occurrence, elevation, soil and climatic predictors, this study assessed current and [...] Read more.
Africa’s rainfed agricultural systems are highly exposed to climate change, making shifts in temperature and rainfall a major concern for staple-food crop production. Using a MaxENT ecological niche modelling approach with crop occurrence, elevation, soil and climatic predictors, this study assessed current and future suitability for rainfed maize, millet and sorghum under RCP 4.5 and RCP 8.5. The projections show a notable expansion of 11.1–22.0% in areas suitable for maize cultivation, and a decline of 1.6–7.3% in areas suitable for production of millet and sorghum, indicating likelihood for increased food-security risks in regions dependent on drought-tolerant cereals. These differing shifts highlight the need for targeted adaptation measures, including crop diversification and region-specific planning to help sustain crop production under a changing climate. Full article
(This article belongs to the Section Land–Climate Interactions)
24 pages, 11340 KB  
Article
De Novo Functional Characterization of AcABI5 Transcription Factor and Its Role in Physiological Responses to Salt Stress in Alhagi camelorum Callus
by Zhengtao Yan, Ya Zhan, Xiangyi Li, Bo Zhang and Gangliang Tang
Int. J. Mol. Sci. 2026, 27(9), 3812; https://doi.org/10.3390/ijms27093812 - 24 Apr 2026
Abstract
Alhagi camelorum is a dominant leguminous shrub distributed in the Taklamakan Desert, an area characterized by extreme drought and high soil salinization, which can complete its life cycle normally in salt-affected soils. However, the underlying molecular regulatory mechanism of its salt tolerance remains [...] Read more.
Alhagi camelorum is a dominant leguminous shrub distributed in the Taklamakan Desert, an area characterized by extreme drought and high soil salinization, which can complete its life cycle normally in salt-affected soils. However, the underlying molecular regulatory mechanism of its salt tolerance remains largely unclear. The AcABI5 gene was successfully cloned and characterized, and it encodes a typical nuclear-localized bZIP transcription factor. Functional characterization demonstrated that overexpression of AcABI5 markedly improved the salt stress tolerance of A. camelorum calli, whereas silencing of AcABI5 via virus-induced gene silencing (VIGS) rendered the plant more sensitive to salt stress. Further mechanistic investigations revealed that AcABI5 enhanced salt tolerance by regulating the expression of superoxide dismutase (SOD)- and peroxidase (POD)-related antioxidant genes. Compared with the wild type, AcABI5-overexpressing calli exhibited significantly increased SOD and POD activities and remarkably reduced malondialdehyde (MDA) content under salt treatment, whereas AcABI5-silenced lines exhibited the opposite physiological phenotypes. Furthermore, heterologous silencing of AcABI5 in Nicotiana benthamiana via virus-induced gene silencing (VIGS) produced comparable salt-sensitive phenotypes, similar to those observed in A. camelorum AcABI5-silenced lines. Collectively, these results provide insights into the molecular mechanism by which AcABI5 enhances salt tolerance in A. camelorum, and lay a solid theoretical foundation for the optimization of the A. camelorum genetic transformation system and the expansion of related salt-tolerant crop research. Full article
(This article belongs to the Section Molecular Plant Sciences)
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16 pages, 851 KB  
Article
Effects of Replacing Corn Stover Silage with Sweet Sorghum Silage on Dry Matter Intake, Fibre Digestibility, and Milk Composition in Thai Holstein Crossbred Dairy Cows
by Norakamol Laorodphan, Thanatsan Poonpaiboonpipat, Tossaporn Incharoen, Suban Foiklang, Anusorn Cherdthong, Paiboon Panase, Nattapat Chaporton and Payungsuk Intawicha
Ruminants 2026, 6(2), 27; https://doi.org/10.3390/ruminants6020027 - 24 Apr 2026
Abstract
Milk production in tropical smallholder systems is constrained by limited high-quality roughage during the hot–dry season. Sweet sorghum silage is drought-tolerant and may replace corn stover silage. Twelve Holstein–Friesian crossbred cows were assigned to the same commercial concentrate plus either corn stover silage [...] Read more.
Milk production in tropical smallholder systems is constrained by limited high-quality roughage during the hot–dry season. Sweet sorghum silage is drought-tolerant and may replace corn stover silage. Twelve Holstein–Friesian crossbred cows were assigned to the same commercial concentrate plus either corn stover silage or sweet sorghum silage as the primary roughage source (n = 6 per diet). Intake, apparent digestibility, milk yield and composition, and feed-use efficiency were evaluated on day 15 and 30 and analyzed using linear mixed-effects models with cow as a random effect. Compared with corn stover silage, sweet sorghum silage increased dry matter intake (p < 0.05) and improved the digestibility of fibre fractions, including crude fibre, NDF and ADF (p ≤ 0.003), while crude protein- and nitrogen-free extract digestibility were not different (p > 0.05). Milk yield, 4% fat-corrected milk, energy-corrected milk, and feed-use efficiency indices were unaffected by silage source (p > 0.05). Milk protein concentration was higher with sweet sorghum silage (treatment effect p < 0.05), whereas milk fat and lactose were unchanged. Sweet sorghum silage can therefore replace corn stover silage in tropical dairy diets, improving intake and fibre utilization without compromising milk output. Full article
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23 pages, 3554 KB  
Article
Differential Jasmonate Profiles in Oat Roots and Leaves Reveal a Role for 12-Oxo Phytodienoic Acid (OPDA) in Drought Tolerance by Modulating Root Growth
by Francisco J. Canales, Gracia Montilla-Bascón, Nicolas Rispail, Vicent Arbona, Luis A. J. Mur and Elena Prats
Plants 2026, 15(9), 1312; https://doi.org/10.3390/plants15091312 - 24 Apr 2026
Abstract
Jasmonates (JAs) are a diverse group of jasmonic acid (JA)-linked metabolites, including the biosynthetic intermediate 12-oxophytodienoic acid (OPDA). Although changes in JAs have been associated with plant responses to abiotic stress, the involvement and kinetics of specific forms such as JA, JA-Ile and [...] Read more.
Jasmonates (JAs) are a diverse group of jasmonic acid (JA)-linked metabolites, including the biosynthetic intermediate 12-oxophytodienoic acid (OPDA). Although changes in JAs have been associated with plant responses to abiotic stress, the involvement and kinetics of specific forms such as JA, JA-Ile and OPDA require further clarification. This study analyzed jasmonate profiles in roots and leaves of two oat genotypes differing in drought tolerance. Jasmonates were quantified using UPLC-MS/MS, expression of key biosynthetic genes was assessed by qRT-PCR, and JA/OPDA treatments were applied to evaluate their effects on physiological and morphological responses to drought. Drought induced contrasting jasmonate dynamics in roots and leaves, with overall JA levels increasing in leaves and decreasing in roots, with genotype- and compound-specific differences. JA and JA-Ile ((+)-7-iso-jasmonoyl-L-isoleucine) showed similar trends, whereas OPDA displayed a distinct pattern. The tolerant genotype exhibited an early and marked reduction in root OPDA, while the susceptible one showed minimal change. Exogenous OPDA increased drought symptoms, reduced leaf relative water content and strongly decreased root length by limiting the formation of new thin roots. In contrast, JA application alleviated drought symptoms, reflected in a lower area under the drought progress curve, without affecting root length. Results suggest that under water deficit, reduced OPDA, likely due to its conversion into JA and JA-Ile, is associated with the development of small-diameter roots essential for maintaining water status in oat. Together, these results highlight tissue-specific differences in jasmonate dynamics during drought and show that OPDA and JA treatments lead to distinct drought-related responses in both leaves and roots. Full article
18 pages, 13534 KB  
Article
Genome-Wide Identification of Pineapple AcINH Genes and Functional Characterization of AcINH3 in Sucrose Metabolism and Drought Tolerance
by Yuyao Gao, Shanshan Huo, Anping Guo, Xiumei Zhang, Weisheng Sun, Wentian Xu, Hui Zhao and Qingsong Wu
Plants 2026, 15(9), 1306; https://doi.org/10.3390/plants15091306 - 24 Apr 2026
Viewed by 66
Abstract
Seasonal drought constitutes a major abiotic stress limiting the growth and yield of pineapple, a globally important Crassulacean acid metabolism (CAM) crop. The sucrose catabolism mediated by cell wall invertase (CWIN) plays a vital role in regulating plant growth and development, as well [...] Read more.
Seasonal drought constitutes a major abiotic stress limiting the growth and yield of pineapple, a globally important Crassulacean acid metabolism (CAM) crop. The sucrose catabolism mediated by cell wall invertase (CWIN) plays a vital role in regulating plant growth and development, as well as adaptive responses to abiotic stresses. Invertase inhibitors (INHs) serve as specific post-translational regulators that modulate CWIN enzymatic activity. However, the INH family has not been systematically characterized in pineapple, and its functional roles in mediating sucrose metabolism and drought resistance remain elusive. In this study, three AcINHs were identified from the pineapple genome, followed by comprehensive analyses of their gene structures, phylogenetic relationships, homology characteristics and protein structures. Structural analysis revealed that all AcINH members harbor conserved motifs 1, 2, 3, 5 and 9, whereas only AcINH3 possesses motif 7. Expression analysis showed that only AcINH3 was significantly transcriptionally induced by drought stress among all family members. Functional validation demonstrated that AcINH3 knockout markedly elevated CWIN activity in pineapple seedling leaves, facilitating hexose accumulation and promoting plant growth and development. Moreover, AcINH3-edited lines exhibited enhanced drought resistance, accompanied by increased accumulation of soluble sugars (sucrose, glucose, fructose), abscisic acid (ABA), and proline (PRO), reduced malondialdehyde (MDA) content, and enhanced peroxidase (POD) activity. Biochemical assays further verified a direct physical interaction between AcINH3 and AcCWIN1, which mediates sucrose metabolism and drought stress responses. Collectively, this study identifies a novel AcINH3–AcCWIN1 post-translational module that modulates sugar metabolism and drought tolerance in pineapple, providing critical mechanistic insights for CAM plants. Our findings highlight AcINH3 as a promising target for genome-editing breeding to enhance drought resistance in CAM crops. Full article
(This article belongs to the Section Plant Genetics, Genomics and Biotechnology)
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36 pages, 2005 KB  
Article
Projected Climate-Driven Shifts in Maize Production in Bosnia and Herzegovina: Regional Analysis Using Agroclimatic Indicators and Modelling Tools
by Daniela Soares, Sabrija Čadro, Marko Ivanišević, Dženan Vukotić, João Rolim, Teresa A. Paço and Paula Paredes
Agriculture 2026, 16(9), 934; https://doi.org/10.3390/agriculture16090934 - 23 Apr 2026
Viewed by 163
Abstract
This study assesses the impacts of climate change (CC) on maize production in Bosnia and Herzegovina, comparing ten maize-producing municipalities and using Gradiška as a case study. Agroclimatic indicators and ISAREG-based soil water balance simulations were used to evaluate regional suitability for future [...] Read more.
This study assesses the impacts of climate change (CC) on maize production in Bosnia and Herzegovina, comparing ten maize-producing municipalities and using Gradiška as a case study. Agroclimatic indicators and ISAREG-based soil water balance simulations were used to evaluate regional suitability for future maize production. Projections indicate substantial increases in average temperatures of 2 to 6 Celsius by the end of the century, depending on the RCP scenario, together with important reductions in accumulated mean precipitation, particularly during summer. Rising temperatures accelerate maize phenology, shortening growth cycles and enabling double-cropping opportunities for short-season cycles. Medium-season cycles may become feasible in most regions, while long-season cycles remain constrained in high-altitude areas due to thermal requirements. Rainfed maize in Gradiška is expected to face increased relative evapotranspiration deficits under future ‘hot & dry’ conditions, with potential relative yield losses due to water deficit of up to 12%. Irrigated maize shows a variation in irrigation requirements from −26% to +8% relative to the baseline, which reflects the combined effect of a shortened crop growth cycle under higher temperatures and increased evapotranspiration demand under drier conditions. Regions with high soil water-holding capacity are the most resilient, while areas with shallow soils or Mediterranean climates are more vulnerable under future conditions. The findings underscore the need for agronomic adaptation measures to the projected CC impacts, including supplemental irrigation, drought-tolerant cultivars, and potential adjustment of sowing. Full article
35 pages, 1056 KB  
Review
Does It Hold Water? Effectiveness, Feasibility, and Risks of Drought Adaptation Amendments
by Noah Silber-Coats and Guillermo Alvarez
Agronomy 2026, 16(9), 854; https://doi.org/10.3390/agronomy16090854 - 23 Apr 2026
Viewed by 88
Abstract
Increasing freshwater scarcity alongside growing irrigation demand poses a major challenge for agricultural production. One potential response is the use of drought adaptation amendments: materials of natural or synthetic origin that, when applied to soil or crops, either increase water availability or improve [...] Read more.
Increasing freshwater scarcity alongside growing irrigation demand poses a major challenge for agricultural production. One potential response is the use of drought adaptation amendments: materials of natural or synthetic origin that, when applied to soil or crops, either increase water availability or improve plant performance under water stress. Because these amendments range from minerals and microorganisms to polymers and plant-derived compounds, they are often studied in separate disciplinary literatures rather than as a single category of inputs. Here, we review drought adaptation amendments for agricultural use and evaluate them along three dimensions: effectiveness in mitigating drought stress, economic feasibility, and environmental and human-health implications. Across amendment classes, effectiveness is achieved through several recurring pathways, including reduced soil evaporation, altered canopy energy balance, improved infiltration and soil water retention, improved rhizosphere and root access to retained water, and enhanced physiological tolerance to water deficit. No single amendment consistently performs best across all three criteria. Materials that strongly modify soil water dynamics can be effective but may be costly or environmentally risky, while lower-risk options often have smaller or more context-dependent effects. Among the most promising lower-risk options identified in this review are microbial inoculants, certain mineral amendments, and water-based plant extracts, though their effectiveness remains context-dependent. Future research should prioritize amendments that combine drought-mitigating effects with economic feasibility and minimal environmental or health risks. Full article
16 pages, 1247 KB  
Article
Comparative Investigation into Metabolic Pathways and Corresponding Gene Expression Profiles of Sorghum Under Drought Stress
by Fei Zhang, Linlin Yang, Zeyang Zhao, Jiaxu Wang, Kuangye Zhang, Baizhi Chen, Youhou Duan, Han Wu, Yanqiu Wang, Kai Zhu and Feng Lu
Agronomy 2026, 16(9), 849; https://doi.org/10.3390/agronomy16090849 - 22 Apr 2026
Viewed by 113
Abstract
Drought stress is one of the most critical abiotic stresses restricting global crop production, and sorghum plays an important role in arid and semi-arid areas due to its inherent drought tolerance compared to many other cereals. However, significant variation in drought tolerance exists [...] Read more.
Drought stress is one of the most critical abiotic stresses restricting global crop production, and sorghum plays an important role in arid and semi-arid areas due to its inherent drought tolerance compared to many other cereals. However, significant variation in drought tolerance exists among different sorghum genotypes, which provides an opportunity to dissect the underlying mechanisms. In this study, a drought-tolerant sorghum line (LNR-6) and a drought-sensitive line (LR-2381) were used for comparative analysis. Plants were grown under two water regimes: well-watered conditions (CK, soil water content maintained at 40%) and drought stress (soil water content reduced to 24%). Integrated transcriptomic and non-targeted metabolomic analyses were conducted to investigate the physiological and molecular mechanisms underlying sorghum drought tolerance. Phenotypic analysis showed that drought stress significantly reduced plant height and chlorophyll content in the drought-sensitive genotype, whereas the drought-tolerant genotype showed only minor changes. Transcriptome analysis identified several enriched functional categories of differentially expressed genes between the two genotypes under drought stress. Among them, genes associated with limonene and pinene degradation, photosynthesis, and photosynthesis-antenna proteins were significantly enriched and may be involved in drought-response regulation. Metabolomic analysis revealed significant accumulation of flavonoids and phenylpropanoids under drought conditions. KEGG pathway enrichment further indicated that flavone and flavonol biosynthesis, flavonoid biosynthesis, and phenylpropanoid biosynthesis were the most significantly enriched metabolic pathways. Overall, these findings enhance our understanding of the coordinated transcriptional and metabolic responses underlying drought tolerance in sorghum. Full article
(This article belongs to the Special Issue Plant Stress Tolerance: From Genetic Mechanism to Cultivation Methods)
17 pages, 4017 KB  
Article
Identification of the GST Gene Family in Reaumuria soongorica and Its Response to Drought Stress
by Jun Zhao, Liying Ma, Weibo Du, Qianwen Song, Luna Xing, Wei Chen, Qingyan Zhao, Chunlei Zhen and Songsong Lu
Biology 2026, 15(8), 660; https://doi.org/10.3390/biology15080660 - 21 Apr 2026
Viewed by 287
Abstract
This study conducted a genome-wide identification and functional analysis of the glutathione S-transferase (GST) gene family in the xerophytic desert shrub Reaumuria soongorica. A total of 67 GST genes were identified, classified into seven subfamilies, including Phi and Tau, with [...] Read more.
This study conducted a genome-wide identification and functional analysis of the glutathione S-transferase (GST) gene family in the xerophytic desert shrub Reaumuria soongorica. A total of 67 GST genes were identified, classified into seven subfamilies, including Phi and Tau, with family expansion primarily attributed to small-scale duplication events. The findings revealed that ResoGST52, a member of the Tau subfamily, serves as a core gene in drought response, exhibiting significant upregulation of 2.40-fold in leaves and 9.01-fold in roots under drought stress. Mechanistic investigations indicated that the expression of ResoGST52 is likely directly regulated by the transcription factor ResoDof17, with specific hydrogen bonding interactions identified between the two. Co-expression network analysis further demonstrated that ResoGST52 cooperates with key pathways such as plant hormone signaling, MAPK cascades, and glutathione metabolism to collectively respond to drought stress. Notably, evolutionary analysis revealed that ResoGST52 has undergone positive selection, with three positively selected sites identified. Among these, the p.Ala115Ser mutation increases the volume of the protein’s active site pocket, while the remaining mutations enhance surface hydrophobicity, thereby improving protein stability and catalytic efficiency under extreme drought conditions. In summary, this study not only systematically identifies the GST gene family in R. soongorica but also elucidates the central role of ResoGST52 in drought adaptation through multiple layers—from transcriptional regulation and co-expression networks to protein structural adaptive evolution—providing valuable candidate genes and theoretical insights for genetic improvement of drought tolerance in crops. Full article
(This article belongs to the Special Issue Adaptation Mechanisms of Forest Trees to Abiotic Stress (2nd Edition))
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24 pages, 10065 KB  
Article
Genome-Wide Identification of the CCCH Gene Family and Functional Exploration of MdC3H49 Under Drought Stress Response in Apple (Malus domestica)
by Da Zhang, Chao Zhao, Bowei Zhu, Xin Liu, Han Wang, Yaping Song, Guodong Zhao, Linguang Jia, Dongmei Chen, Tongsheng Zhao, Xinsheng Zhang and Chaohong Zhang
Plants 2026, 15(8), 1270; https://doi.org/10.3390/plants15081270 - 21 Apr 2026
Viewed by 228
Abstract
CCCH zinc-finger proteins constitute a unique class of transcription factors that play vital roles in mediating plant tolerance to biotic and abiotic stresses and regulating various physiological and developmental processes. This study systematically identified and characterized the apple (Malus domestica) CCCH [...] Read more.
CCCH zinc-finger proteins constitute a unique class of transcription factors that play vital roles in mediating plant tolerance to biotic and abiotic stresses and regulating various physiological and developmental processes. This study systematically identified and characterized the apple (Malus domestica) CCCH (MdC3H) gene family, aiming to elucidate its evolutionary patterns, functional characteristics, and regulatory mechanisms under drought stress. Genome-wide analysis revealed 85 MdC3H genes, which were unevenly distributed across chromosomes and exhibited significant differences in physiochemical properties, suggesting functional divergence. Phylogenetic analysis classified these genes into 9 subfamilies with distinct conservation. Collinearity analysis indicated a close evolutionary relationship between apple and Malus sieversii, with 150 collinear gene pairs identified, highlighting the conservation of the C3H gene family during speciation. Cis-acting element prediction in promoter regions uncovered abundant stress-responsive elements (e.g., ABRE, DRE, MYB), implying the potential of MdC3H genes in coordinating environmental signals. Functional verification demonstrated that MdC3H49, a key member of the family, is localized in the nucleus and possesses transcriptional activation activity. Overexpression of MdC3H49 in Arabidopsis and apple calli significantly enhanced drought tolerance, characterized by reduced malondialdehyde (MDA) content, relative electrical conductivity, and increased proline accumulation. Mechanistic studies revealed that MdC3H49 directly regulates the expression of MdP5CS, a core gene in proline biosynthesis, thereby strengthening the cellular antioxidant capacity and mitigating drought-induced damage. Collectively, this study establishes MdC3H49 as a critical regulator in apple drought stress response, providing valuable insights into the molecular mechanisms underlying abiotic stress tolerance in perennial plants and laying a foundation for genetic improvement of drought resistance in apple breeding. Full article
(This article belongs to the Section Plant Genetics, Genomics and Biotechnology)
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20 pages, 6122 KB  
Article
Genome-Wide Identification of the IDD Gene Family in Soybean (Glycine max) and Their Expression Profiles in Response to Drought, Salt Stress, and Different Photoperiod Conditions
by Rouxing Li, Zixiang Ning, Zhihui Dong, Jian Xi, Chenjie Shi, Xianlian Chen, Qingyuan He, Shaochuang Chuang, Xue Yang and Yingjie Shu
Genes 2026, 17(4), 489; https://doi.org/10.3390/genes17040489 - 20 Apr 2026
Viewed by 147
Abstract
Background: INDETERMINATE DOMAIN proteins (IDDs) are a plant-specific transcription factor family, and members of this family play crucial roles in regulating growth and development as well as environmental adaptation. However, a comprehensive analysis of the IDD family in soybean [Glycine max (L.) [...] Read more.
Background: INDETERMINATE DOMAIN proteins (IDDs) are a plant-specific transcription factor family, and members of this family play crucial roles in regulating growth and development as well as environmental adaptation. However, a comprehensive analysis of the IDD family in soybean [Glycine max (L.) Merrill] is limited. Methods and Results: A total of 27 GmIDD genes were identified in the soybean genome, unevenly distributed across 14 chromosomes, and their encoded proteins all harbor a conserved INDETERMINATE (ID) domain with two Cys2His2 (C2H2) and two Cys2HisCys (C2HC) zinc finger motifs. Phylogenetic analysis classified these GmIDD genes into three subgroups. Soybean GmIDD genes exhibit high homology with their Arabidopsis thaliana IDD counterparts. Cis-acting element analysis indicated that the promoters of GmIDD genes are enriched in light-responsive elements (such as Box4), hormone-responsive elements (such as ABRE and AuxRR-core), and abiotic stress-responsive elements (such as MBS and LTR). The qRT-PCR results showed that GmIDD3/5/14/22/26 were upregulated under salt stress, while GmIDD8/9/10/12/16/17/19/20/23/24/25/27 were obviously downregulated during treatment. Under drought stress, the expression levels of GmIDD4/6/7/10/14/16/19/22/24/25/26/27 were upregulated during the treatment. The expression levels of GmIDD1/2/3/4/12/14/15/16/17/18/22/23/25/26 were induced by short-day conditions, whereas GmIDD9/13/19/21 were induced by long-day conditions in soybean leaves. Conclusions: This study provides a theoretical basis for further understanding the functions of the soybean IDD gene family in abiotic stress tolerance and photoperiod adaptability. Full article
(This article belongs to the Section Plant Genetics and Genomics)
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